Initializing AMReX (24.08-30-gbaec46e7baeb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-30-gbaec46e7baeb) initialized Starting run at 05:36:47 UTC on 2024-08-21. Successfully read inputs file ... Castro git describe: 24.08-4-g677b8ea2f AMReX git describe: 24.08-30-gbaec46e7b Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014366245 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345338387 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339765927 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326346307 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.326911369 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.373658947 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311565679 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30828615 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306239367 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306457383 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308695332 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007577101 seconds Ending run at 05:36:50 UTC on 2024-08-21. Run time = 3.502194058 Run time without initialization = 3.265517287 Average number of zones advanced per microsecond: 0.803 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.502 ... 3.502 ... 3.502 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2328 2.3044 2.3512 67.13% Gravity::make_radial_gravity() 21 0.2953 0.3058 0.3272 9.34% check_for_negative_density() 10 0.03452 0.08032 0.1547 4.42% Castro::initData() 1 0.04796 0.08574 0.1199 3.42% FabArray::ParallelCopy_finish() 41 0.04042 0.05986 0.1057 3.02% Castro::estTimeStep() 21 0.02656 0.06389 0.09805 2.80% amrex::Copy() 193 0.06097 0.07842 0.09135 2.61% FabArray::setVal() 143 0.04947 0.06641 0.07342 2.10% Amr::InitAmr() 1 0.0002084 0.007149 0.05569 1.59% DistributionMapping::LeastUsedCPUs() 1 2.968e-05 0.04859 0.05554 1.59% Castro::reset_internal_energy(Fab) 1008 0.04491 0.04686 0.0481 1.37% FabArray::ParallelCopy_nowait() 41 0.03498 0.04092 0.04677 1.34% Castro::normalize_species() 62 0.04093 0.04188 0.04302 1.23% StateData::FillBoundary(geom) 41 0.02957 0.03302 0.0352 1.01% FillPatchIterator::Initialize 41 0.02667 0.03131 0.03416 0.98% Gravity::interpolate_monopole_grav() 21 0.02712 0.02906 0.03028 0.86% Castro::construct_new_gravity_source() 10 0.02326 0.02454 0.02579 0.74% Castro::initialize_do_advance() 10 0.01144 0.01602 0.02212 0.63% Castro::computeTemp() 63 0.02025 0.02078 0.02135 0.61% FabArray::setDomainBndry() 41 0.007037 0.01041 0.02054 0.59% MultiFab::contains_nan() 20 0.009254 0.011 0.01355 0.39% Castro::initialize_advance() 10 0.005203 0.01057 0.01324 0.38% FabArray::Saxpy() 20 0.01047 0.01188 0.01296 0.37% VisMF::Write(FabArray) 2 0.008999 0.009669 0.01285 0.37% Amr::writePlotFile() 2 0.007475 0.009486 0.009941 0.28% Castro::construct_old_gravity_source() 10 0.006505 0.008931 0.009602 0.27% Castro::initMFs() 1 0.006455 0.00679 0.007995 0.23% Castro::construct_new_source() 50 0.005422 0.006108 0.006539 0.19% main() 1 0.003735 0.003911 0.004033 0.12% Gravity::get_new_grav_vector() 11 0.00281 0.003374 0.003844 0.11% Gravity::get_old_grav_vector() 10 0.001444 0.00196 0.00239 0.07% Amr::coarseTimeStep() 10 0.00109 0.001877 0.002357 0.07% Castro::finalize_do_advance() 10 0.0004391 0.0009499 0.001173 0.03% AmrLevel::FillPatch() 41 0.0007084 0.0009696 0.001067 0.03% Amr::timeStep() 10 0.0001692 0.0002199 0.0003927 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002746 0.0002906 0.000307 0.01% Castro::clean_state() 62 0.0001433 0.0001584 0.0001767 0.01% Castro::do_advance_ctu() 10 0.0001236 0.0001421 0.0001586 0.00% StateDataPhysBCFunct::() 41 9.375e-05 0.0001187 0.0001519 0.00% FillPatchIterator::FillFromLevel0() 41 9.66e-05 0.0001074 0.0001317 0.00% Castro::Castro() 1 5.161e-05 9.644e-05 0.0001168 0.00% Castro::do_old_sources() 10 7.309e-05 8.586e-05 9.462e-05 0.00% FabArray::ParallelCopy() 41 7.091e-05 8.301e-05 9.446e-05 0.00% Castro::construct_old_source() 50 5.256e-05 7.772e-05 9.009e-05 0.00% FillPatchSingleLevel 41 6.672e-05 7.511e-05 8.419e-05 0.00% Amr::FinalizeInit() 1 3.266e-06 1.306e-05 6.498e-05 0.00% Castro::do_new_sources() 10 5.312e-05 5.876e-05 6.328e-05 0.00% Castro::subcycle_advance_ctu() 10 4.397e-05 5.257e-05 6.304e-05 0.00% Castro::apply_source_to_state() 20 4.146e-05 4.895e-05 5.679e-05 0.00% Castro::advance() 10 3.371e-05 4.575e-05 5.371e-05 0.00% Amr::defBaseLevel() 1 3.156e-05 4.102e-05 4.841e-05 0.00% Castro::construct_old_gravity() 10 3.321e-05 3.775e-05 4.232e-05 0.00% Castro::construct_new_gravity() 10 2.502e-05 3.193e-05 3.882e-05 0.00% Castro::check_for_nan() 20 2.347e-05 2.656e-05 3.211e-05 0.00% Castro::expand_state() 10 2.087e-05 2.489e-05 3.013e-05 0.00% Castro::post_timestep() 10 1.47e-05 1.806e-05 2.147e-05 0.00% Castro::post_init() 1 7.843e-06 8.634e-06 1.064e-05 0.00% Castro::computeNewDt() 9 7.902e-06 8.755e-06 1.039e-05 0.00% Amr::InitializeInit() 1 2.531e-06 3.435e-06 7.607e-06 0.00% Amr::init() 1 1.651e-06 2.643e-06 6.628e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.981e-06 4.99e-06 6.249e-06 0.00% Castro::computeInitialDt() 2 3.06e-06 3.641e-06 4.196e-06 0.00% Amr::initialInit() 1 1.322e-06 1.719e-06 2.177e-06 0.00% Other 258 0.01447 0.01735 0.0186 0.53% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.502 3.502 3.502 100.00% Amr::coarseTimeStep() 10 3.254 3.254 3.254 92.91% Amr::timeStep() 10 3.24 3.241 3.242 92.55% Castro::advance() 10 3.224 3.225 3.225 92.08% Castro::subcycle_advance_ctu() 10 3.145 3.154 3.172 90.57% Castro::do_advance_ctu() 10 3.145 3.154 3.172 90.56% Castro::construct_ctu_hydro_source() 10 2.403 2.405 2.408 68.75% Gravity::make_radial_gravity() 21 0.3108 0.3216 0.3404 9.72% Amr::init() 1 0.1808 0.2294 0.2363 6.75% AmrLevel::FillPatch() 41 0.1989 0.2092 0.2282 6.52% Amr::initialInit() 1 0.1663 0.2153 0.2223 6.35% Gravity::get_new_grav_vector() 11 0.2105 0.2117 0.213 6.08% Castro::construct_old_gravity() 10 0.1848 0.1936 0.2097 5.99% Gravity::get_old_grav_vector() 10 0.1834 0.1927 0.2091 5.97% FillPatchIterator::Initialize 41 0.1637 0.176 0.2044 5.84% Amr::InitializeInit() 1 0.0777 0.1551 0.1957 5.59% Amr::defBaseLevel() 1 0.07769 0.1551 0.1957 5.59% Castro::construct_new_gravity() 10 0.1879 0.1889 0.1897 5.42% Castro::initialize_do_advance() 10 0.1671 0.1748 0.1812 5.17% FillPatchIterator::FillFromLevel0() 41 0.1168 0.1343 0.1707 4.87% FillPatchSingleLevel 41 0.1167 0.1342 0.1706 4.87% check_for_negative_density() 10 0.03452 0.08032 0.1547 4.42% FabArray::ParallelCopy() 41 0.08283 0.1009 0.1408 4.02% Castro::expand_state() 10 0.1127 0.1219 0.1304 3.72% Castro::initData() 1 0.05176 0.08967 0.1239 3.54% Castro::clean_state() 62 0.1127 0.115 0.1177 3.36% FabArray::ParallelCopy_finish() 41 0.04042 0.05986 0.1057 3.02% Castro::estTimeStep() 21 0.02656 0.06389 0.09805 2.80% Amr::FinalizeInit() 1 0.02658 0.06019 0.09781 2.79% Castro::do_old_sources() 10 0.09017 0.09417 0.09754 2.79% amrex::Copy() 193 0.06097 0.07842 0.09135 2.61% Castro::initialize_advance() 10 0.04902 0.06778 0.07659 2.19% Castro::computeInitialDt() 2 0.002196 0.03592 0.0735 2.10% FabArray::setVal() 143 0.04947 0.06641 0.07342 2.10% Castro::computeTemp() 63 0.06554 0.06793 0.06946 1.98% Castro::do_new_sources() 10 0.05874 0.06283 0.06697 1.91% Amr::InitAmr() 1 0.0002115 0.007152 0.0557 1.59% DistributionMapping::SFCProcessorMapDoIt() 1 5.647e-05 0.0486 0.05555 1.59% DistributionMapping::LeastUsedCPUs() 1 2.968e-05 0.04859 0.05554 1.59% Castro::reset_internal_energy(MultiFab) 63 0.0452 0.04715 0.04841 1.38% Castro::reset_internal_energy(Fab) 1008 0.04491 0.04686 0.0481 1.37% FabArray::ParallelCopy_nowait() 41 0.03506 0.04101 0.04685 1.34% Castro::normalize_species() 62 0.04093 0.04188 0.04302 1.23% StateDataPhysBCFunct::() 41 0.02968 0.03314 0.03532 1.01% StateData::FillBoundary(geom) 41 0.02957 0.03302 0.0352 1.01% Castro::construct_new_source() 50 0.02896 0.03065 0.03213 0.92% Gravity::interpolate_monopole_grav() 21 0.02712 0.02906 0.03028 0.86% Castro::construct_new_gravity_source() 10 0.02326 0.02454 0.02579 0.74% Castro::post_init() 1 0.02359 0.02381 0.02401 0.69% Castro::finalize_do_advance() 10 0.01419 0.01862 0.0223 0.64% Amr::writePlotFile() 2 0.02166 0.02178 0.02218 0.63% FabArray::setDomainBndry() 41 0.007037 0.01041 0.02054 0.59% Castro::post_timestep() 10 0.01556 0.01587 0.01648 0.47% Castro::check_for_nan() 20 0.009279 0.01103 0.01358 0.39% MultiFab::contains_nan() 20 0.009254 0.011 0.01355 0.39% Castro::apply_source_to_state() 20 0.01052 0.01193 0.01301 0.37% FabArray::Saxpy() 20 0.01047 0.01188 0.01296 0.37% VisMF::Write(FabArray) 2 0.008999 0.009669 0.01285 0.37% Castro::Castro() 1 0.01045 0.01111 0.01202 0.34% Castro::computeNewDt() 9 0.0103 0.01031 0.01033 0.29% Castro::construct_old_source() 50 0.006557 0.009009 0.009684 0.28% Castro::construct_old_gravity_source() 10 0.006505 0.008931 0.009602 0.27% Castro::initMFs() 1 0.006455 0.00679 0.007995 0.23% Other 258 0.0243 0.02778 0.02964 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-30-gbaec46e7baeb) finalized