Initializing AMReX (24.08-32-gb05f69fe3748)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-32-gb05f69fe3748) initialized Starting run at 05:38:20 UTC on 2024-08-22. Successfully read inputs file ... Castro git describe: 24.08-4-g677b8ea2f AMReX git describe: 24.08-32-gb05f69fe3 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014670013 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346291531 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.348878098 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328702449 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.327424187 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.391501753 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.317107958 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.322342669 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307119148 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307152274 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308721654 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007647728 seconds Ending run at 05:38:23 UTC on 2024-08-22. Run time = 3.516207931 Run time without initialization = 3.31776161 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5157 ... 3.5159 ... 3.5163 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2751 2.3182 2.3743 67.52% Gravity::make_radial_gravity() 21 0.2973 0.3043 0.3124 8.89% check_for_negative_density() 10 0.05847 0.1172 0.1604 4.56% Castro::initData() 1 0.05725 0.0908 0.1316 3.74% FabArray::ParallelCopy_finish() 41 0.04372 0.0663 0.1124 3.20% Castro::estTimeStep() 21 0.03682 0.07217 0.1068 3.04% amrex::Copy() 193 0.06199 0.07885 0.09353 2.66% FabArray::setVal() 143 0.05493 0.06597 0.07278 2.07% Castro::reset_internal_energy(Fab) 1008 0.04197 0.04601 0.04845 1.38% Castro::normalize_species() 62 0.04095 0.04205 0.04299 1.22% FabArray::ParallelCopy_nowait() 41 0.0349 0.03965 0.04178 1.19% FillPatchIterator::Initialize 41 0.02698 0.03207 0.03504 1.00% StateData::FillBoundary(geom) 41 0.03067 0.03259 0.03426 0.97% Gravity::interpolate_monopole_grav() 21 0.0276 0.0296 0.03127 0.89% Castro::construct_new_gravity_source() 10 0.0225 0.02464 0.02752 0.78% Castro::computeTemp() 63 0.01878 0.02039 0.02145 0.61% Castro::initialize_do_advance() 10 0.01145 0.01615 0.01758 0.50% Castro::initialize_advance() 10 0.005329 0.01063 0.01344 0.38% FabArray::Saxpy() 20 0.01001 0.01174 0.01293 0.37% Amr::writePlotFile() 2 0.00764 0.01074 0.01261 0.36% MultiFab::contains_nan() 20 0.009166 0.01063 0.01227 0.35% VisMF::Write(FabArray) 2 0.008649 0.009604 0.01219 0.35% FabArray::setDomainBndry() 41 0.007029 0.009769 0.01204 0.34% Castro::construct_old_gravity_source() 10 0.00609 0.008778 0.009519 0.27% Castro::initMFs() 1 0.007097 0.007429 0.007678 0.22% Castro::construct_new_source() 50 0.005495 0.005958 0.006215 0.18% main() 1 0.003843 0.004092 0.00446 0.13% Gravity::get_new_grav_vector() 11 0.002544 0.00326 0.003758 0.11% Amr::coarseTimeStep() 10 0.001274 0.002084 0.003321 0.09% Gravity::get_old_grav_vector() 10 0.00152 0.001978 0.002545 0.07% Castro::finalize_do_advance() 10 0.0004542 0.001027 0.001374 0.04% AmrLevel::FillPatch() 41 0.0006672 0.0008516 0.001121 0.03% Castro::Castro() 1 6.952e-05 0.0001398 0.0004743 0.01% Amr::timeStep() 10 0.0001607 0.0002205 0.0004346 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000268 0.0002746 0.000281 0.01% Castro::clean_state() 62 0.0001371 0.0001584 0.0001816 0.01% StateDataPhysBCFunct::() 41 9.617e-05 0.0001208 0.0001718 0.00% Castro::do_advance_ctu() 10 0.0001191 0.0001414 0.000171 0.00% FillPatchIterator::FillFromLevel0() 41 8.888e-05 0.0001063 0.000127 0.00% FabArray::ParallelCopy() 41 7.286e-05 8.942e-05 0.0001061 0.00% Castro::do_old_sources() 10 5.949e-05 8.037e-05 9.418e-05 0.00% Castro::construct_old_source() 50 4.692e-05 7.202e-05 8.917e-05 0.00% FillPatchSingleLevel 41 6.888e-05 7.526e-05 8.322e-05 0.00% Amr::FinalizeInit() 1 3.756e-06 1.383e-05 7.766e-05 0.00% Castro::subcycle_advance_ctu() 10 3.948e-05 5e-05 6.626e-05 0.00% Castro::do_new_sources() 10 4.454e-05 5.413e-05 6.11e-05 0.00% Castro::advance() 10 4.008e-05 4.444e-05 5.408e-05 0.00% Castro::apply_source_to_state() 20 3.473e-05 4.349e-05 5.285e-05 0.00% Amr::defBaseLevel() 1 3.234e-05 4e-05 4.412e-05 0.00% Castro::construct_old_gravity() 10 3.168e-05 3.704e-05 4.228e-05 0.00% Castro::construct_new_gravity() 10 2.85e-05 3.251e-05 3.822e-05 0.00% Castro::expand_state() 10 2.032e-05 2.404e-05 3.113e-05 0.00% Castro::check_for_nan() 20 2.125e-05 2.54e-05 3.05e-05 0.00% Castro::post_timestep() 10 1.515e-05 1.692e-05 1.999e-05 0.00% Castro::post_init() 1 7.677e-06 1.063e-05 1.52e-05 0.00% Castro::computeNewDt() 9 7.869e-06 9.417e-06 1.174e-05 0.00% Amr::InitializeInit() 1 7.135e-06 7.954e-06 1.099e-05 0.00% Castro::computeInitialDt() 2 3.545e-06 3.842e-06 4.272e-06 0.00% Amr::init() 1 1.415e-06 1.85e-06 2.162e-06 0.00% Amr::initialInit() 1 1.267e-06 1.689e-06 2.109e-06 0.00% Other 261 0.01631 0.01841 0.01998 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.516 3.516 3.516 100.00% Amr::coarseTimeStep() 10 3.306 3.306 3.306 94.01% Amr::timeStep() 10 3.292 3.293 3.294 93.69% Castro::advance() 10 3.277 3.278 3.278 93.22% Castro::subcycle_advance_ctu() 10 3.203 3.207 3.223 91.65% Castro::do_advance_ctu() 10 3.203 3.207 3.223 91.65% Castro::construct_ctu_hydro_source() 10 2.453 2.456 2.459 69.93% Gravity::make_radial_gravity() 21 0.3127 0.3197 0.3279 9.32% AmrLevel::FillPatch() 41 0.1942 0.2122 0.2392 6.80% FillPatchIterator::Initialize 41 0.162 0.1809 0.2134 6.07% Gravity::get_new_grav_vector() 11 0.2093 0.2108 0.2122 6.04% Castro::construct_old_gravity() 10 0.1898 0.1978 0.2122 6.04% Gravity::get_old_grav_vector() 10 0.1891 0.1971 0.2115 6.01% Amr::init() 1 0.1979 0.1981 0.1981 5.63% Castro::construct_new_gravity() 10 0.1849 0.1858 0.1868 5.31% Amr::initialInit() 1 0.1827 0.1829 0.1831 5.21% Castro::initialize_do_advance() 10 0.1538 0.1644 0.1798 5.11% FillPatchIterator::FillFromLevel0() 41 0.1171 0.139 0.1794 5.10% FillPatchSingleLevel 41 0.117 0.1389 0.1793 5.10% check_for_negative_density() 10 0.05847 0.1172 0.1604 4.56% Amr::InitializeInit() 1 0.08051 0.1132 0.1541 4.38% Amr::defBaseLevel() 1 0.0805 0.1132 0.1541 4.38% FabArray::ParallelCopy() 41 0.08438 0.1061 0.1474 4.19% Castro::initData() 1 0.06153 0.09475 0.1356 3.86% Castro::expand_state() 10 0.09941 0.1117 0.131 3.73% Castro::clean_state() 62 0.1071 0.1139 0.1184 3.37% FabArray::ParallelCopy_finish() 41 0.04372 0.0663 0.1124 3.20% Castro::do_old_sources() 10 0.09075 0.1019 0.1077 3.06% Castro::estTimeStep() 21 0.03682 0.07217 0.1068 3.04% Amr::FinalizeInit() 1 0.02871 0.06969 0.1023 2.91% amrex::Copy() 193 0.06199 0.07885 0.09353 2.66% Castro::computeInitialDt() 2 0.002168 0.04302 0.07572 2.15% FabArray::setVal() 143 0.05493 0.06597 0.07278 2.07% Castro::initialize_advance() 10 0.05109 0.06698 0.07173 2.04% Castro::computeTemp() 63 0.06102 0.06668 0.07018 2.00% Castro::do_new_sources() 10 0.05676 0.06256 0.07005 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04224 0.04629 0.04872 1.39% Castro::reset_internal_energy(Fab) 1008 0.04197 0.04601 0.04845 1.38% Castro::normalize_species() 62 0.04095 0.04205 0.04299 1.22% FabArray::ParallelCopy_nowait() 41 0.03498 0.03973 0.04186 1.19% StateDataPhysBCFunct::() 41 0.03083 0.03271 0.03436 0.98% StateData::FillBoundary(geom) 41 0.03067 0.03259 0.03426 0.97% Castro::construct_new_source() 50 0.02799 0.0306 0.03373 0.96% Gravity::interpolate_monopole_grav() 21 0.0276 0.0296 0.03127 0.89% Castro::construct_new_gravity_source() 10 0.0225 0.02464 0.02752 0.78% Castro::finalize_do_advance() 10 0.0126 0.02108 0.02666 0.76% Castro::post_init() 1 0.02602 0.02623 0.02654 0.75% Amr::writePlotFile() 2 0.02255 0.02293 0.02312 0.66% Castro::post_timestep() 10 0.0145 0.01562 0.01626 0.46% Castro::apply_source_to_state() 20 0.01005 0.01178 0.01298 0.37% FabArray::Saxpy() 20 0.01001 0.01174 0.01293 0.37% Castro::Castro() 1 0.01024 0.012 0.01243 0.35% Castro::check_for_nan() 20 0.009187 0.01066 0.0123 0.35% MultiFab::contains_nan() 20 0.009166 0.01063 0.01227 0.35% VisMF::Write(FabArray) 2 0.008649 0.009604 0.01219 0.35% FabArray::setDomainBndry() 41 0.007029 0.009769 0.01204 0.34% Castro::construct_old_source() 50 0.006136 0.00885 0.009592 0.27% Castro::construct_old_gravity_source() 10 0.00609 0.008778 0.009519 0.27% Castro::computeNewDt() 9 0.009096 0.009116 0.009136 0.26% Castro::initMFs() 1 0.007097 0.007429 0.007678 0.22% Other 261 0.02666 0.02955 0.03199 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-32-gb05f69fe3748) finalized