Initializing AMReX (24.08-33-g12002e728328)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-33-g12002e728328) initialized Starting run at 05:38:22 UTC on 2024-08-23. Successfully read inputs file ... Castro git describe: 24.08-4-g677b8ea2f AMReX git describe: 24.08-33-g12002e728 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015424943 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350600111 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.348282849 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.348651722 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.368263805 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.335567705 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.3099302 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.310132613 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.310545714 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310556297 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.312037128 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007668971 seconds Ending run at 05:38:25 UTC on 2024-08-23. Run time = 3.533095473 Run time without initialization = 3.317050161 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5330 ... 3.5330 ... 3.5331 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2460 2.3216 2.3816 67.41% Gravity::make_radial_gravity() 21 0.2988 0.305 0.3162 8.95% check_for_negative_density() 10 0.05519 0.1146 0.194 5.49% Castro::initData() 1 0.04907 0.08894 0.1449 4.10% Castro::estTimeStep() 21 0.0231 0.09147 0.1331 3.77% amrex::Copy() 193 0.0648 0.07779 0.08489 2.40% FabArray::ParallelCopy_finish() 41 0.03808 0.05689 0.08465 2.40% FabArray::setVal() 143 0.06163 0.06716 0.07639 2.16% Castro::reset_internal_energy(Fab) 1008 0.04627 0.04712 0.04755 1.35% Castro::normalize_species() 62 0.04168 0.04268 0.04393 1.24% FabArray::ParallelCopy_nowait() 41 0.03303 0.03967 0.04183 1.18% FillPatchIterator::Initialize 41 0.02784 0.03321 0.03689 1.04% StateData::FillBoundary(geom) 41 0.03013 0.03302 0.03513 0.99% Gravity::interpolate_monopole_grav() 21 0.02707 0.02991 0.03096 0.88% Castro::construct_new_gravity_source() 10 0.02375 0.02575 0.02881 0.82% Castro::computeTemp() 63 0.02045 0.02096 0.02124 0.60% Castro::initialize_do_advance() 10 0.01374 0.01778 0.02102 0.60% FabArray::Saxpy() 20 0.01005 0.0122 0.01294 0.37% VisMF::Write(FabArray) 2 0.009494 0.01018 0.01293 0.37% Castro::initialize_advance() 10 0.005545 0.009672 0.01216 0.34% Amr::writePlotFile() 2 0.007758 0.01079 0.01216 0.34% FabArray::setDomainBndry() 41 0.008048 0.01004 0.0121 0.34% MultiFab::contains_nan() 20 0.01034 0.01081 0.01115 0.32% Castro::initMFs() 1 0.006492 0.007339 0.009615 0.27% Castro::construct_old_gravity_source() 10 0.006189 0.008721 0.009231 0.26% Castro::construct_new_source() 50 0.005226 0.005853 0.006024 0.17% Gravity::get_new_grav_vector() 11 0.002969 0.003802 0.004458 0.13% main() 1 0.004074 0.004179 0.00425 0.12% Amr::coarseTimeStep() 10 0.001282 0.001835 0.002437 0.07% Gravity::get_old_grav_vector() 10 0.001593 0.00199 0.002384 0.07% Castro::finalize_do_advance() 10 0.0004768 0.0008977 0.001078 0.03% AmrLevel::FillPatch() 41 0.0007715 0.0008443 0.000932 0.03% Amr::timeStep() 10 0.0001793 0.0002151 0.0003885 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002671 0.000287 0.000317 0.01% Castro::clean_state() 62 0.0001464 0.0001599 0.0001826 0.01% Castro::do_advance_ctu() 10 0.0001179 0.0001437 0.0001621 0.00% FillPatchIterator::FillFromLevel0() 41 9.98e-05 0.0001071 0.0001244 0.00% StateDataPhysBCFunct::() 41 9.715e-05 0.0001083 0.0001232 0.00% FabArray::ParallelCopy() 41 7.667e-05 8.738e-05 0.0001005 0.00% Castro::Castro() 1 5.838e-05 6.938e-05 8.879e-05 0.00% Castro::do_old_sources() 10 7.448e-05 8.339e-05 8.844e-05 0.00% Castro::construct_old_source() 50 5.437e-05 7.179e-05 8.658e-05 0.00% FillPatchSingleLevel 41 6.569e-05 7.315e-05 7.992e-05 0.00% Amr::FinalizeInit() 1 4.273e-06 1.37e-05 7.097e-05 0.00% Castro::do_new_sources() 10 5.346e-05 5.622e-05 6.396e-05 0.00% Castro::construct_old_gravity() 10 3.444e-05 4.002e-05 5.747e-05 0.00% Castro::subcycle_advance_ctu() 10 3.923e-05 4.708e-05 5.476e-05 0.00% Amr::defBaseLevel() 1 3.347e-05 4.227e-05 5.101e-05 0.00% Castro::apply_source_to_state() 20 4.162e-05 4.448e-05 5.04e-05 0.00% Castro::advance() 10 3.927e-05 4.104e-05 4.28e-05 0.00% Castro::construct_new_gravity() 10 2.855e-05 3.107e-05 3.444e-05 0.00% Castro::expand_state() 10 1.906e-05 2.467e-05 3.132e-05 0.00% Castro::check_for_nan() 20 2.141e-05 2.504e-05 3.076e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.328e-05 1.842e-05 2.908e-05 0.00% Castro::post_timestep() 10 1.587e-05 1.988e-05 2.43e-05 0.00% Amr::init() 1 1.777e-06 4.536e-06 1.91e-05 0.00% Castro::post_init() 1 8.699e-06 1.048e-05 1.449e-05 0.00% Castro::computeNewDt() 9 8.7e-06 9.196e-06 1.02e-05 0.00% Castro::computeInitialDt() 2 3.682e-06 4.296e-06 5.672e-06 0.00% Amr::InitializeInit() 1 2.687e-06 3.722e-06 5.147e-06 0.00% Amr::initialInit() 1 1.253e-06 1.894e-06 3.029e-06 0.00% Other 260 0.01566 0.01855 0.0219 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.533 3.533 3.533 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 93.55% Amr::timeStep() 10 3.293 3.293 3.294 93.22% Castro::advance() 10 3.277 3.277 3.278 92.77% Castro::subcycle_advance_ctu() 10 3.197 3.205 3.209 90.83% Castro::do_advance_ctu() 10 3.197 3.205 3.209 90.83% Castro::construct_ctu_hydro_source() 10 2.455 2.457 2.461 69.65% Gravity::make_radial_gravity() 21 0.3149 0.3218 0.3323 9.41% Gravity::get_new_grav_vector() 11 0.2194 0.2218 0.2229 6.31% Amr::init() 1 0.2155 0.2156 0.2157 6.10% AmrLevel::FillPatch() 41 0.1914 0.205 0.2148 6.08% Amr::initialInit() 1 0.1998 0.1999 0.2 5.66% Castro::construct_new_gravity() 10 0.1941 0.1963 0.197 5.58% Castro::construct_old_gravity() 10 0.1813 0.1866 0.195 5.52% check_for_negative_density() 10 0.05519 0.1146 0.194 5.49% Gravity::get_old_grav_vector() 10 0.1806 0.1858 0.1939 5.49% FillPatchIterator::Initialize 41 0.1576 0.1733 0.1859 5.26% Castro::initialize_do_advance() 10 0.1653 0.1718 0.181 5.12% Amr::InitializeInit() 1 0.0687 0.1102 0.1701 4.82% Amr::defBaseLevel() 1 0.0687 0.1102 0.1701 4.82% FillPatchIterator::FillFromLevel0() 41 0.1109 0.13 0.1496 4.23% FillPatchSingleLevel 41 0.1108 0.1299 0.1495 4.23% Castro::initData() 1 0.05278 0.09272 0.1489 4.22% Castro::estTimeStep() 21 0.0231 0.09147 0.1331 3.77% Amr::FinalizeInit() 1 0.02973 0.08972 0.1313 3.71% Castro::expand_state() 10 0.1079 0.1175 0.1276 3.61% Castro::clean_state() 62 0.1149 0.1161 0.118 3.34% FabArray::ParallelCopy() 41 0.07793 0.09673 0.1178 3.34% Castro::computeInitialDt() 2 0.0026 0.06275 0.1041 2.95% Castro::do_old_sources() 10 0.08724 0.09032 0.09224 2.61% amrex::Copy() 193 0.0648 0.07779 0.08489 2.40% FabArray::ParallelCopy_finish() 41 0.03808 0.05689 0.08465 2.40% Castro::initialize_advance() 10 0.06387 0.06845 0.07682 2.17% FabArray::setVal() 143 0.06163 0.06716 0.07639 2.16% Castro::do_new_sources() 10 0.06199 0.06695 0.07542 2.13% Castro::computeTemp() 63 0.067 0.06837 0.06893 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04655 0.04741 0.04782 1.35% Castro::reset_internal_energy(Fab) 1008 0.04627 0.04712 0.04755 1.35% Castro::normalize_species() 62 0.04168 0.04268 0.04393 1.24% FabArray::ParallelCopy_nowait() 41 0.03311 0.03975 0.04191 1.19% StateDataPhysBCFunct::() 41 0.03023 0.03312 0.03522 1.00% StateData::FillBoundary(geom) 41 0.03013 0.03302 0.03513 0.99% Castro::construct_new_source() 50 0.02909 0.0316 0.03477 0.98% Gravity::interpolate_monopole_grav() 21 0.02707 0.02991 0.03096 0.88% Castro::construct_new_gravity_source() 10 0.02375 0.02575 0.02881 0.82% Castro::post_init() 1 0.02606 0.02652 0.02681 0.76% Castro::finalize_do_advance() 10 0.01255 0.02074 0.02582 0.73% Amr::writePlotFile() 2 0.02333 0.0235 0.02366 0.67% Castro::post_timestep() 10 0.01576 0.01589 0.01624 0.46% Castro::Castro() 1 0.009643 0.01091 0.01311 0.37% Castro::apply_source_to_state() 20 0.01009 0.01224 0.01298 0.37% FabArray::Saxpy() 20 0.01005 0.0122 0.01294 0.37% VisMF::Write(FabArray) 2 0.009494 0.01018 0.01293 0.37% FabArray::setDomainBndry() 41 0.008048 0.01004 0.0121 0.34% Castro::check_for_nan() 20 0.01037 0.01083 0.01118 0.32% MultiFab::contains_nan() 20 0.01034 0.01081 0.01115 0.32% Castro::initMFs() 1 0.006492 0.007339 0.009615 0.27% Castro::construct_old_source() 50 0.006243 0.008792 0.009318 0.26% Castro::construct_old_gravity_source() 10 0.006189 0.008721 0.009231 0.26% Castro::computeNewDt() 9 0.008893 0.008904 0.008916 0.25% AmrLevel::AmrLevel(dm) 1 0.005402 0.006288 0.008006 0.23% Other 260 0.02029 0.02404 0.02833 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-33-g12002e728328) finalized