Initializing AMReX (24.08-33-g12002e728328)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-33-g12002e728328) initialized Starting run at 05:21:52 UTC on 2024-08-26. Successfully read inputs file ... Castro git describe: 24.08-4-g677b8ea2f AMReX git describe: 24.08-33-g12002e728 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015042198 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341709738 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.359731024 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.329122276 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.327122182 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359170902 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.355003425 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.354726864 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.3586096 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.354928779 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.360381206 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008893957 seconds Ending run at 05:21:55 UTC on 2024-08-26. Run time = 3.716949797 Run time without initialization = 3.514901268 Average number of zones advanced per microsecond: 0.746 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.7162 ... 3.7167 ... 3.7170 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3204 2.4370 2.5833 69.50% Gravity::make_radial_gravity() 21 0.2927 0.3059 0.3249 8.74% check_for_negative_density() 10 0.02498 0.1749 0.2914 7.84% Castro::initData() 1 0.04855 0.08975 0.1382 3.72% Castro::estTimeStep() 21 0.02537 0.07538 0.1153 3.10% FabArray::ParallelCopy_finish() 41 0.04983 0.05875 0.1023 2.75% amrex::Copy() 193 0.06139 0.08186 0.09172 2.47% FabArray::setVal() 143 0.05211 0.07121 0.0759 2.04% Castro::reset_internal_energy(Fab) 1008 0.04702 0.04912 0.0564 1.52% FabArray::ParallelCopy_nowait() 41 0.03746 0.04331 0.04558 1.23% Castro::normalize_species() 62 0.04199 0.04314 0.04516 1.21% FillPatchIterator::Initialize 41 0.03071 0.03379 0.03558 0.96% StateData::FillBoundary(geom) 41 0.03092 0.0329 0.03542 0.95% Gravity::interpolate_monopole_grav() 21 0.02815 0.02906 0.02983 0.80% Castro::construct_new_gravity_source() 10 0.02197 0.02575 0.02729 0.73% Castro::computeTemp() 63 0.02049 0.02118 0.02185 0.59% Castro::initialize_do_advance() 10 0.01017 0.01541 0.01712 0.46% FabArray::Saxpy() 20 0.01239 0.01341 0.01452 0.39% MultiFab::contains_nan() 20 0.01126 0.01263 0.01434 0.39% VisMF::Write(FabArray) 2 0.009552 0.01039 0.01335 0.36% Amr::writePlotFile() 2 0.008068 0.01111 0.01327 0.36% Castro::initialize_advance() 10 0.004203 0.01173 0.01293 0.35% FabArray::setDomainBndry() 41 0.007832 0.01022 0.01174 0.32% Castro::construct_old_gravity_source() 10 0.009792 0.01041 0.01097 0.30% Castro::initMFs() 1 0.006484 0.007193 0.007479 0.20% Castro::construct_new_source() 50 0.005673 0.006617 0.006983 0.19% main() 1 0.004262 0.004773 0.005071 0.14% Gravity::get_old_grav_vector() 10 0.001555 0.002523 0.004133 0.11% Gravity::get_new_grav_vector() 11 0.002565 0.003442 0.004075 0.11% Amr::coarseTimeStep() 10 0.00103 0.001362 0.001826 0.05% Castro::finalize_do_advance() 10 0.0004694 0.0009866 0.001267 0.03% AmrLevel::FillPatch() 41 0.0006735 0.0009993 0.001157 0.03% Amr::timeStep() 10 0.0001455 0.000242 0.0005537 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.0002993 0.0003686 0.01% Castro::clean_state() 62 0.000154 0.0001697 0.0001971 0.01% Castro::do_advance_ctu() 10 0.0001367 0.0001592 0.000184 0.00% FillPatchIterator::FillFromLevel0() 41 9.878e-05 0.000118 0.0001415 0.00% StateDataPhysBCFunct::() 41 9.248e-05 0.0001073 0.0001284 0.00% Castro::construct_old_source() 50 6.798e-05 8.27e-05 0.0001208 0.00% Castro::do_old_sources() 10 7.664e-05 9.431e-05 0.0001136 0.00% FabArray::ParallelCopy() 41 7.909e-05 9.041e-05 0.0001017 0.00% Amr::FinalizeInit() 1 3.527e-06 1.494e-05 8.985e-05 0.00% Castro::Castro() 1 7.128e-05 7.985e-05 8.861e-05 0.00% FillPatchSingleLevel 41 7.427e-05 7.908e-05 8.698e-05 0.00% Castro::do_new_sources() 10 5.072e-05 6.024e-05 7.247e-05 0.00% Amr::defBaseLevel() 1 2.751e-05 5.346e-05 6.819e-05 0.00% Castro::construct_old_gravity() 10 3.247e-05 4.515e-05 5.547e-05 0.00% Castro::subcycle_advance_ctu() 10 4.071e-05 5.056e-05 5.494e-05 0.00% Castro::apply_source_to_state() 20 4.161e-05 4.853e-05 5.328e-05 0.00% Castro::advance() 10 4.002e-05 4.417e-05 5.19e-05 0.00% Castro::construct_new_gravity() 10 2.643e-05 3.28e-05 4.076e-05 0.00% Castro::check_for_nan() 20 2.109e-05 2.765e-05 3.922e-05 0.00% Castro::expand_state() 10 2.234e-05 2.498e-05 2.714e-05 0.00% Castro::post_timestep() 10 1.559e-05 1.772e-05 1.919e-05 0.00% Castro::post_init() 1 8.461e-06 1.044e-05 1.361e-05 0.00% Castro::computeNewDt() 9 8.233e-06 8.927e-06 9.84e-06 0.00% Amr::InitializeInit() 1 3.058e-06 3.914e-06 6.371e-06 0.00% Castro::computeInitialDt() 2 2.966e-06 3.749e-06 4.344e-06 0.00% Amr::init() 1 1.897e-06 2.31e-06 3.288e-06 0.00% Amr::initialInit() 1 1.311e-06 1.773e-06 2.544e-06 0.00% Other 261 0.01599 0.01848 0.02004 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.716 3.717 3.717 100.00% Amr::coarseTimeStep() 10 3.501 3.501 3.501 94.19% Amr::timeStep() 10 3.489 3.49 3.49 93.89% Castro::advance() 10 3.473 3.474 3.474 93.46% Castro::subcycle_advance_ctu() 10 3.392 3.397 3.421 92.04% Castro::do_advance_ctu() 10 3.392 3.397 3.421 92.04% Castro::construct_ctu_hydro_source() 10 2.63 2.633 2.637 70.95% Gravity::make_radial_gravity() 21 0.308 0.3224 0.3387 9.11% check_for_negative_density() 10 0.02498 0.1749 0.2914 7.84% AmrLevel::FillPatch() 41 0.1982 0.2141 0.2354 6.33% Castro::construct_old_gravity() 10 0.1882 0.1994 0.2139 5.75% Gravity::get_old_grav_vector() 10 0.1871 0.1986 0.2132 5.74% FillPatchIterator::Initialize 41 0.1685 0.1795 0.211 5.68% Gravity::get_new_grav_vector() 11 0.2079 0.2089 0.2103 5.66% Amr::init() 1 0.2015 0.2017 0.2017 5.43% Castro::construct_new_gravity() 10 0.1852 0.1861 0.1872 5.04% Amr::initialInit() 1 0.1861 0.1865 0.1866 5.02% Castro::initialize_do_advance() 10 0.1657 0.177 0.1865 5.02% FillPatchIterator::FillFromLevel0() 41 0.126 0.1354 0.1725 4.64% FillPatchSingleLevel 41 0.1259 0.1353 0.1723 4.64% Amr::InitializeInit() 1 0.06986 0.1112 0.1602 4.31% Amr::defBaseLevel() 1 0.06985 0.1112 0.1601 4.31% Castro::initData() 1 0.05229 0.09365 0.1421 3.82% Castro::expand_state() 10 0.112 0.1205 0.1403 3.77% FabArray::ParallelCopy() 41 0.09344 0.1022 0.1399 3.76% Castro::clean_state() 62 0.1164 0.1191 0.126 3.39% Amr::FinalizeInit() 1 0.02634 0.07527 0.1165 3.13% Castro::estTimeStep() 21 0.02537 0.07538 0.1153 3.10% Castro::do_old_sources() 10 0.09815 0.1042 0.1069 2.88% FabArray::ParallelCopy_finish() 41 0.04983 0.05875 0.1023 2.75% Castro::computeInitialDt() 2 0.00224 0.05114 0.09236 2.48% amrex::Copy() 193 0.06139 0.08186 0.09172 2.47% Castro::computeTemp() 63 0.06779 0.07059 0.07854 2.11% Castro::initialize_advance() 10 0.04802 0.07242 0.0781 2.10% FabArray::setVal() 143 0.05211 0.07121 0.0759 2.04% Castro::do_new_sources() 10 0.05636 0.06514 0.06739 1.81% Castro::reset_internal_energy(MultiFab) 63 0.0473 0.04942 0.05676 1.53% Castro::reset_internal_energy(Fab) 1008 0.04702 0.04912 0.0564 1.52% FabArray::ParallelCopy_nowait() 41 0.03756 0.0434 0.04567 1.23% Castro::normalize_species() 62 0.04199 0.04314 0.04516 1.21% StateDataPhysBCFunct::() 41 0.03103 0.03301 0.03553 0.96% StateData::FillBoundary(geom) 41 0.03092 0.0329 0.03542 0.95% Castro::construct_new_source() 50 0.02764 0.03237 0.03428 0.92% Gravity::interpolate_monopole_grav() 21 0.02815 0.02906 0.02983 0.80% Castro::construct_new_gravity_source() 10 0.02197 0.02575 0.02729 0.73% Amr::writePlotFile() 2 0.02404 0.02417 0.02461 0.66% Castro::finalize_do_advance() 10 0.01424 0.01637 0.0243 0.65% Castro::post_init() 1 0.02341 0.02364 0.02374 0.64% Castro::post_timestep() 10 0.01534 0.0158 0.01609 0.43% Castro::apply_source_to_state() 20 0.01244 0.01346 0.01457 0.39% FabArray::Saxpy() 20 0.01239 0.01341 0.01452 0.39% Castro::check_for_nan() 20 0.01128 0.01266 0.01438 0.39% MultiFab::contains_nan() 20 0.01126 0.01263 0.01434 0.39% VisMF::Write(FabArray) 2 0.009552 0.01039 0.01335 0.36% Castro::Castro() 1 0.009232 0.0113 0.01209 0.33% FabArray::setDomainBndry() 41 0.007832 0.01022 0.01174 0.32% Castro::construct_old_source() 50 0.009864 0.0105 0.01109 0.30% Castro::construct_old_gravity_source() 10 0.009792 0.01041 0.01097 0.30% Castro::computeNewDt() 9 0.008868 0.008874 0.00888 0.24% Castro::initMFs() 1 0.006484 0.007193 0.007479 0.20% Other 261 0.02632 0.02998 0.03217 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-33-g12002e728328) finalized