Initializing AMReX (24.08-33-g12002e728328)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-33-g12002e728328) initialized Starting run at 05:20:51 UTC on 2024-08-27. Successfully read inputs file ... Castro git describe: 24.08-4-g677b8ea2f AMReX git describe: 24.08-33-g12002e728 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014336945 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345403455 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.350136337 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.34262671 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.344999244 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.380111201 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.319565875 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.313239588 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.312910556 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.317986052 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.320089003 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007783444 seconds Ending run at 05:20:55 UTC on 2024-08-27. Run time = 3.54801878 Run time without initialization = 3.359515131 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5474 ... 3.5478 ... 3.5481 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2562 2.3490 2.4043 67.76% Gravity::make_radial_gravity() 21 0.3067 0.3146 0.3222 9.08% check_for_negative_density() 10 0.04501 0.09955 0.1984 5.59% Castro::initData() 1 0.04754 0.0882 0.124 3.50% FabArray::ParallelCopy_finish() 41 0.04967 0.06527 0.1105 3.12% Castro::estTimeStep() 21 0.02657 0.06611 0.1092 3.08% amrex::Copy() 193 0.06135 0.08003 0.09059 2.55% FabArray::setVal() 143 0.05524 0.06568 0.07035 1.98% Castro::normalize_species() 62 0.0433 0.04956 0.05396 1.52% Castro::reset_internal_energy(Fab) 1008 0.04621 0.0478 0.05274 1.49% FabArray::ParallelCopy_nowait() 41 0.03407 0.04197 0.05104 1.44% FillPatchIterator::Initialize 41 0.02653 0.03294 0.03816 1.08% StateData::FillBoundary(geom) 41 0.03165 0.03362 0.03658 1.03% Gravity::interpolate_monopole_grav() 21 0.02854 0.02917 0.02966 0.84% Castro::construct_new_gravity_source() 10 0.02224 0.02436 0.02528 0.71% Castro::computeTemp() 63 0.02086 0.02186 0.02324 0.66% Castro::initialize_do_advance() 10 0.01133 0.01643 0.018 0.51% FabArray::setDomainBndry() 41 0.008764 0.01122 0.01533 0.43% MultiFab::contains_nan() 20 0.01058 0.01159 0.01394 0.39% Castro::initialize_advance() 10 0.005242 0.01037 0.01327 0.37% FabArray::Saxpy() 20 0.009848 0.01178 0.01258 0.35% VisMF::Write(FabArray) 2 0.00881 0.009511 0.0119 0.34% Amr::writePlotFile() 2 0.007597 0.01011 0.01165 0.33% Castro::construct_old_gravity_source() 10 0.006054 0.008532 0.009404 0.27% Castro::initMFs() 1 0.006356 0.007261 0.007905 0.22% Castro::construct_new_source() 50 0.005683 0.006348 0.007133 0.20% Amr::coarseTimeStep() 10 0.002948 0.004013 0.005246 0.15% main() 1 0.003592 0.003955 0.004304 0.12% Gravity::get_new_grav_vector() 11 0.002692 0.003173 0.003578 0.10% Gravity::get_old_grav_vector() 10 0.001743 0.001978 0.002436 0.07% Castro::finalize_do_advance() 10 0.0004546 0.0008659 0.0009364 0.03% AmrLevel::FillPatch() 41 0.0006924 0.000738 0.0008487 0.02% Amr::timeStep() 10 0.0001785 0.0002483 0.0005126 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002789 0.0002974 0.0003585 0.01% Castro::clean_state() 62 0.0001404 0.0001646 0.0001968 0.01% Castro::do_advance_ctu() 10 0.0001217 0.0001517 0.0001911 0.01% StateDataPhysBCFunct::() 41 9.364e-05 0.0001195 0.0001658 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001079 0.0001175 0.0001343 0.00% Castro::Castro() 1 6.96e-05 8.661e-05 0.000119 0.00% FabArray::ParallelCopy() 41 7.941e-05 9.035e-05 0.0001024 0.00% FillPatchSingleLevel 41 6.786e-05 7.74e-05 9.403e-05 0.00% Castro::do_old_sources() 10 7.056e-05 8.319e-05 9.397e-05 0.00% Amr::FinalizeInit() 1 3.744e-06 1.652e-05 8.953e-05 0.00% Castro::construct_old_source() 50 6.035e-05 7.434e-05 8.87e-05 0.00% Castro::subcycle_advance_ctu() 10 4.227e-05 5.73e-05 7.802e-05 0.00% Castro::do_new_sources() 10 5.35e-05 6.257e-05 7.724e-05 0.00% Castro::construct_old_gravity() 10 3.264e-05 4.224e-05 6.859e-05 0.00% Amr::defBaseLevel() 1 2.694e-05 5.008e-05 6.323e-05 0.00% Castro::advance() 10 3.38e-05 4.49e-05 5.307e-05 0.00% Castro::apply_source_to_state() 20 4.136e-05 4.42e-05 4.724e-05 0.00% Castro::construct_new_gravity() 10 2.784e-05 3.274e-05 4.058e-05 0.00% Castro::check_for_nan() 20 2.319e-05 2.601e-05 3.003e-05 0.00% Castro::expand_state() 10 2.151e-05 2.401e-05 2.717e-05 0.00% Castro::post_timestep() 10 1.432e-05 1.692e-05 1.873e-05 0.00% Castro::post_init() 1 7.772e-06 1.138e-05 1.651e-05 0.00% Castro::computeNewDt() 9 8.274e-06 8.971e-06 9.963e-06 0.00% Amr::init() 1 1.885e-06 3.111e-06 8.651e-06 0.00% Amr::initialInit() 1 1.444e-06 2.535e-06 8.339e-06 0.00% Amr::InitializeInit() 1 2.952e-06 3.655e-06 6.298e-06 0.00% Castro::computeInitialDt() 2 3.05e-06 4.03e-06 5.581e-06 0.00% Other 261 0.0163 0.01817 0.01952 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.547 3.548 3.548 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 94.35% Amr::timeStep() 10 3.332 3.333 3.334 93.96% Castro::advance() 10 3.315 3.315 3.316 93.45% Castro::subcycle_advance_ctu() 10 3.235 3.243 3.258 91.83% Castro::do_advance_ctu() 10 3.235 3.243 3.258 91.83% Castro::construct_ctu_hydro_source() 10 2.468 2.471 2.477 69.83% Gravity::make_radial_gravity() 21 0.3233 0.3299 0.3373 9.51% AmrLevel::FillPatch() 41 0.1986 0.2188 0.2368 6.67% Gravity::get_new_grav_vector() 11 0.2125 0.2145 0.2167 6.11% FillPatchIterator::Initialize 41 0.1692 0.1855 0.2121 5.98% Castro::construct_old_gravity() 10 0.1935 0.2009 0.2075 5.85% Gravity::get_old_grav_vector() 10 0.1925 0.2001 0.2067 5.83% check_for_negative_density() 10 0.04501 0.09955 0.1984 5.59% Castro::construct_new_gravity() 10 0.1895 0.192 0.1935 5.45% Castro::initialize_do_advance() 10 0.1702 0.1771 0.1883 5.31% Amr::init() 1 0.1879 0.1881 0.1881 5.30% FillPatchIterator::FillFromLevel0() 41 0.1288 0.1414 0.1768 4.98% FillPatchSingleLevel 41 0.1287 0.1412 0.1767 4.98% Amr::initialInit() 1 0.1733 0.1736 0.1737 4.89% Amr::InitializeInit() 1 0.06973 0.1106 0.1469 4.14% Amr::defBaseLevel() 1 0.06973 0.1106 0.1469 4.14% FabArray::ParallelCopy() 41 0.0953 0.1074 0.1448 4.08% Castro::expand_state() 10 0.1153 0.1236 0.1385 3.90% Castro::clean_state() 62 0.1169 0.1246 0.1317 3.71% Castro::initData() 1 0.05155 0.09261 0.1287 3.63% FabArray::ParallelCopy_finish() 41 0.04967 0.06527 0.1105 3.12% Castro::estTimeStep() 21 0.02657 0.06611 0.1092 3.08% Castro::do_old_sources() 10 0.09173 0.1022 0.1069 3.01% Amr::FinalizeInit() 1 0.02666 0.06297 0.1039 2.93% amrex::Copy() 193 0.06135 0.08003 0.09059 2.55% Castro::computeInitialDt() 2 0.00235 0.03865 0.07952 2.24% Castro::initialize_advance() 10 0.05342 0.06849 0.07657 2.16% Castro::computeTemp() 63 0.0674 0.06996 0.07599 2.14% FabArray::setVal() 143 0.05524 0.06568 0.07035 1.98% Castro::do_new_sources() 10 0.05862 0.06472 0.06761 1.91% Castro::normalize_species() 62 0.0433 0.04956 0.05396 1.52% Castro::reset_internal_energy(MultiFab) 63 0.0465 0.04809 0.0531 1.50% Castro::reset_internal_energy(Fab) 1008 0.04621 0.0478 0.05274 1.49% FabArray::ParallelCopy_nowait() 41 0.03416 0.04206 0.05112 1.44% StateDataPhysBCFunct::() 41 0.03181 0.03374 0.03667 1.03% StateData::FillBoundary(geom) 41 0.03165 0.03362 0.03658 1.03% Castro::construct_new_source() 50 0.02792 0.03071 0.03186 0.90% Gravity::interpolate_monopole_grav() 21 0.02854 0.02917 0.02966 0.84% Castro::construct_new_gravity_source() 10 0.02224 0.02436 0.02528 0.71% Castro::finalize_do_advance() 10 0.01556 0.01877 0.02471 0.70% Castro::post_init() 1 0.0228 0.02352 0.02389 0.67% Amr::writePlotFile() 2 0.02232 0.0224 0.02273 0.64% Castro::post_timestep() 10 0.016 0.01718 0.01825 0.51% FabArray::setDomainBndry() 41 0.008764 0.01122 0.01533 0.43% Castro::check_for_nan() 20 0.01061 0.01161 0.01397 0.39% MultiFab::contains_nan() 20 0.01058 0.01159 0.01394 0.39% Castro::apply_source_to_state() 20 0.00989 0.01182 0.01262 0.36% FabArray::Saxpy() 20 0.009848 0.01178 0.01258 0.35% Castro::Castro() 1 0.009581 0.01163 0.01248 0.35% VisMF::Write(FabArray) 2 0.00881 0.009511 0.0119 0.34% Castro::computeNewDt() 9 0.009556 0.009573 0.009581 0.27% Castro::construct_old_source() 50 0.006114 0.008607 0.009483 0.27% Castro::construct_old_gravity_source() 10 0.006054 0.008532 0.009404 0.27% Castro::initMFs() 1 0.006356 0.007261 0.007905 0.22% Other 261 0.02725 0.02983 0.032 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 43 B 68 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-33-g12002e728328) finalized