Initializing AMReX (24.08-34-gdf0d594a6a24)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-34-gdf0d594a6a24) initialized Starting run at 05:24:36 UTC on 2024-08-28. Successfully read inputs file ... Castro git describe: 24.08-4-g677b8ea2f AMReX git describe: 24.08-34-gdf0d594a6 Microphysics git describe: 24.08-3-gb45e5022 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014584677 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341787802 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.367994554 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.340050047 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.331852676 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.403363714 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.336974381 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.323370341 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.313155525 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.358627546 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.327123178 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008473649 seconds Ending run at 05:24:40 UTC on 2024-08-28. Run time = 3.664820821 Run time without initialization = 3.458370854 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.6636 ... 3.6644 ... 3.6649 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2818 2.3694 2.4540 66.96% Gravity::make_radial_gravity() 21 0.3009 0.3077 0.3129 8.54% check_for_negative_density() 10 0.06548 0.1548 0.2454 6.70% Castro::initData() 1 0.0481 0.08746 0.1333 3.64% Castro::estTimeStep() 21 0.03963 0.08828 0.1279 3.49% FabArray::ParallelCopy_finish() 41 0.04244 0.07275 0.1217 3.32% amrex::Copy() 193 0.06597 0.08047 0.0879 2.40% FabArray::setVal() 143 0.06099 0.07015 0.07819 2.13% Castro::reset_internal_energy(Fab) 1008 0.04434 0.04855 0.05034 1.37% Castro::normalize_species() 62 0.0416 0.04292 0.04451 1.21% FabArray::ParallelCopy_nowait() 41 0.03479 0.04142 0.0431 1.18% FillPatchIterator::Initialize 41 0.02508 0.03367 0.03765 1.03% StateData::FillBoundary(geom) 41 0.03139 0.03344 0.03626 0.99% Castro::construct_new_gravity_source() 10 0.02497 0.02641 0.03087 0.84% Gravity::interpolate_monopole_grav() 21 0.02796 0.02938 0.03056 0.83% Castro::computeTemp() 63 0.02039 0.02139 0.02202 0.60% Castro::initialize_do_advance() 10 0.01016 0.01845 0.0217 0.59% MultiFab::contains_nan() 20 0.01021 0.01147 0.01445 0.39% FabArray::Saxpy() 20 0.009367 0.0129 0.01374 0.37% FabArray::setDomainBndry() 41 0.006682 0.01116 0.01363 0.37% Amr::writePlotFile() 2 0.007828 0.01079 0.0128 0.35% VisMF::Write(FabArray) 2 0.008696 0.009735 0.01266 0.35% Castro::initialize_advance() 10 0.005545 0.009628 0.01233 0.34% Castro::construct_old_gravity_source() 10 0.006237 0.009996 0.01086 0.30% Amr::InitAmr() 1 0.0001947 0.001459 0.01008 0.28% DistributionMapping::LeastUsedCPUs() 1 2.315e-05 0.00865 0.009916 0.27% Castro::initMFs() 1 0.006497 0.007088 0.007815 0.21% Castro::construct_new_source() 50 0.005765 0.006802 0.007183 0.20% Amr::coarseTimeStep() 10 0.002603 0.00601 0.006844 0.19% main() 1 0.003852 0.004619 0.005126 0.14% Gravity::get_new_grav_vector() 11 0.002577 0.003554 0.004422 0.12% Gravity::get_old_grav_vector() 10 0.00161 0.001999 0.002377 0.06% AmrLevel::FillPatch() 41 0.000738 0.0008707 0.001086 0.03% Castro::finalize_do_advance() 10 0.0004572 0.0009131 0.0009949 0.03% Amr::timeStep() 10 0.0001823 0.0002777 0.0005156 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002809 0.0002984 0.0003506 0.01% Castro::clean_state() 62 0.0001455 0.000167 0.0002054 0.01% Castro::do_advance_ctu() 10 0.0001353 0.0001548 0.0001733 0.00% StateDataPhysBCFunct::() 41 0.0001006 0.0001144 0.0001581 0.00% FillPatchIterator::FillFromLevel0() 41 0.000106 0.0001214 0.0001364 0.00% Amr::FinalizeInit() 1 4.177e-06 1.877e-05 0.0001122 0.00% Castro::do_old_sources() 10 8.903e-05 9.667e-05 0.0001094 0.00% Castro::Castro() 1 5.771e-05 7.96e-05 0.0001045 0.00% FabArray::ParallelCopy() 41 7.816e-05 9.068e-05 0.0001029 0.00% Castro::construct_old_source() 50 6.49e-05 7.904e-05 9.229e-05 0.00% FillPatchSingleLevel 41 7.093e-05 8.052e-05 8.959e-05 0.00% Castro::do_new_sources() 10 5.766e-05 6.624e-05 7.407e-05 0.00% Castro::apply_source_to_state() 20 4.536e-05 5.086e-05 6.047e-05 0.00% Castro::advance() 10 4.454e-05 5.13e-05 5.878e-05 0.00% Castro::subcycle_advance_ctu() 10 4.535e-05 5.229e-05 5.827e-05 0.00% Amr::defBaseLevel() 1 2.34e-05 3.807e-05 4.863e-05 0.00% Castro::construct_old_gravity() 10 3.282e-05 4.006e-05 4.593e-05 0.00% Castro::computeNewDt() 9 9.54e-06 2.667e-05 4.395e-05 0.00% Castro::construct_new_gravity() 10 2.774e-05 3.46e-05 4.146e-05 0.00% Castro::check_for_nan() 20 2.316e-05 2.585e-05 3.403e-05 0.00% Castro::post_init() 1 8.005e-06 1.232e-05 3.085e-05 0.00% Castro::post_timestep() 10 1.788e-05 2.303e-05 2.969e-05 0.00% Castro::expand_state() 10 2.013e-05 2.445e-05 2.894e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.234e-06 6.616e-06 1.467e-05 0.00% Amr::InitializeInit() 1 2.63e-06 3.467e-06 5.746e-06 0.00% Castro::computeInitialDt() 2 3.379e-06 3.867e-06 4.71e-06 0.00% Amr::init() 1 2.071e-06 2.627e-06 3.953e-06 0.00% Amr::initialInit() 1 1.39e-06 1.983e-06 2.816e-06 0.00% Other 258 0.01603 0.01802 0.0196 0.53% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.664 3.664 3.665 100.00% Amr::coarseTimeStep() 10 3.445 3.445 3.445 94.00% Amr::timeStep() 10 3.419 3.422 3.426 93.48% Castro::advance() 10 3.403 3.405 3.406 92.93% Castro::subcycle_advance_ctu() 10 3.319 3.331 3.342 91.18% Castro::do_advance_ctu() 10 3.319 3.331 3.342 91.18% Castro::construct_ctu_hydro_source() 10 2.541 2.545 2.553 69.67% Gravity::make_radial_gravity() 21 0.318 0.3242 0.3297 9.00% AmrLevel::FillPatch() 41 0.2029 0.226 0.2476 6.76% check_for_negative_density() 10 0.06548 0.1548 0.2454 6.70% FillPatchIterator::Initialize 41 0.171 0.1929 0.2218 6.05% Gravity::get_new_grav_vector() 11 0.2124 0.2151 0.2165 5.91% Amr::init() 1 0.1962 0.2048 0.2061 5.62% Castro::construct_old_gravity() 10 0.1929 0.1971 0.2007 5.48% Gravity::get_old_grav_vector() 10 0.1921 0.1961 0.1995 5.44% Castro::initialize_do_advance() 10 0.1722 0.1852 0.1937 5.29% Castro::construct_new_gravity() 10 0.1898 0.1922 0.1934 5.28% Amr::initialInit() 1 0.1815 0.1901 0.1915 5.23% FillPatchIterator::FillFromLevel0() 41 0.1218 0.1481 0.1901 5.19% FillPatchSingleLevel 41 0.1217 0.148 0.1899 5.18% Amr::InitializeInit() 1 0.07066 0.1171 0.1649 4.50% Amr::defBaseLevel() 1 0.07065 0.1171 0.1649 4.50% FabArray::ParallelCopy() 41 0.08569 0.1144 0.1567 4.28% Castro::expand_state() 10 0.1133 0.1297 0.1448 3.95% Castro::initData() 1 0.05226 0.0913 0.1371 3.74% Castro::estTimeStep() 21 0.03963 0.08828 0.1279 3.49% Castro::clean_state() 62 0.112 0.1185 0.1221 3.33% FabArray::ParallelCopy_finish() 41 0.04244 0.07275 0.1217 3.32% Amr::FinalizeInit() 1 0.02615 0.07298 0.1133 3.09% Castro::do_old_sources() 10 0.1021 0.1046 0.1071 2.92% Castro::computeInitialDt() 2 0.002297 0.04876 0.089 2.43% amrex::Copy() 193 0.06597 0.08047 0.0879 2.40% Castro::initialize_advance() 10 0.06012 0.07095 0.08027 2.19% FabArray::setVal() 143 0.06099 0.07015 0.07819 2.13% Castro::computeTemp() 63 0.06501 0.07024 0.07265 1.98% Castro::do_new_sources() 10 0.06468 0.06599 0.06704 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04462 0.04885 0.05063 1.38% Castro::reset_internal_energy(Fab) 1008 0.04434 0.04855 0.05034 1.37% Castro::normalize_species() 62 0.0416 0.04292 0.04451 1.21% FabArray::ParallelCopy_nowait() 41 0.03491 0.04152 0.04318 1.18% Castro::construct_new_source() 50 0.03183 0.03321 0.03664 1.00% StateDataPhysBCFunct::() 41 0.0315 0.03356 0.03637 0.99% StateData::FillBoundary(geom) 41 0.03139 0.03344 0.03626 0.99% Castro::construct_new_gravity_source() 10 0.02497 0.02641 0.03087 0.84% Gravity::interpolate_monopole_grav() 21 0.02796 0.02938 0.03056 0.83% Castro::finalize_do_advance() 10 0.0224 0.02451 0.02701 0.74% Castro::post_init() 1 0.02338 0.02374 0.02391 0.65% Amr::writePlotFile() 2 0.02313 0.02327 0.02363 0.64% Castro::post_timestep() 10 0.01552 0.01655 0.01996 0.54% Castro::computeNewDt() 9 0.01528 0.01596 0.01799 0.49% Castro::check_for_nan() 20 0.01023 0.01149 0.01448 0.40% MultiFab::contains_nan() 20 0.01021 0.01147 0.01445 0.39% Castro::apply_source_to_state() 20 0.009416 0.01295 0.0138 0.38% FabArray::Saxpy() 20 0.009367 0.0129 0.01374 0.37% FabArray::setDomainBndry() 41 0.006682 0.01116 0.01363 0.37% VisMF::Write(FabArray) 2 0.008696 0.009735 0.01266 0.35% Castro::Castro() 1 0.01009 0.0111 0.01196 0.33% Castro::construct_old_source() 50 0.006301 0.01008 0.01095 0.30% Castro::construct_old_gravity_source() 10 0.006237 0.009996 0.01086 0.30% Amr::InitAmr() 1 0.000198 0.001462 0.01009 0.28% DistributionMapping::SFCProcessorMapDoIt() 1 3.893e-05 0.008658 0.009922 0.27% DistributionMapping::LeastUsedCPUs() 1 2.315e-05 0.00865 0.009916 0.27% Castro::initMFs() 1 0.006497 0.007088 0.007815 0.21% Other 258 0.02621 0.02901 0.03156 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-34-gdf0d594a6a24) finalized