Initializing AMReX (24.08-35-g7c2ef81fc14d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-35-g7c2ef81fc14d) initialized Starting run at 05:21:43 UTC on 2024-08-29. Successfully read inputs file ... Castro git describe: 24.08-8-g2b3c8537a AMReX git describe: 24.08-35-g7c2ef81fc Microphysics git describe: 24.08-5-g295e70bb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016378062 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353039919 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.371458058 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.392509821 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.411328782 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.386416713 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.387482319 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.401580221 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.387399119 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.38916646 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.391149436 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012988785 seconds Ending run at 05:21:47 UTC on 2024-08-29. Run time = 4.082391464 Run time without initialization = 3.892293009 Average number of zones advanced per microsecond: 0.673 Average number of zones advanced per microsecond per rank: 0.084 TinyProfiler total time across processes [min...avg...max]: 4.0811 ... 4.0818 ... 4.0825 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4013 2.6044 2.8221 69.13% check_for_negative_density() 10 0.01051 0.2333 0.4407 10.79% Gravity::make_radial_gravity() 21 0.2964 0.3103 0.3289 8.06% Castro::initData() 1 0.05071 0.08681 0.1243 3.04% amrex::Copy() 193 0.1005 0.1106 0.1227 3.01% Castro::estTimeStep() 21 0.02568 0.06604 0.1027 2.52% FabArray::setVal() 143 0.09078 0.0948 0.09794 2.40% FabArray::ParallelCopy_finish() 41 0.05135 0.05774 0.06558 1.61% FabArray::ParallelCopy_nowait() 41 0.05724 0.06023 0.06269 1.54% FillPatchIterator::Initialize 41 0.04574 0.05159 0.05832 1.43% Castro::reset_internal_energy(Fab) 1008 0.04847 0.04967 0.05188 1.27% Castro::normalize_species() 62 0.04273 0.04357 0.04581 1.12% StateData::FillBoundary(geom) 41 0.0362 0.03968 0.04268 1.05% Castro::construct_new_gravity_source() 10 0.02979 0.03296 0.03593 0.88% Gravity::interpolate_monopole_grav() 21 0.02805 0.02914 0.02994 0.73% Castro::initialize_do_advance() 10 0.0219 0.02387 0.02575 0.63% Castro::computeTemp() 63 0.02113 0.02193 0.02306 0.56% FabArray::setDomainBndry() 41 0.01579 0.01969 0.023 0.56% FabArray::Saxpy() 20 0.01684 0.01852 0.02001 0.49% VisMF::Write(FabArray) 2 0.01006 0.01175 0.01603 0.39% MultiFab::contains_nan() 20 0.01165 0.01433 0.01596 0.39% Castro::initialize_advance() 10 0.01485 0.01509 0.01577 0.39% Castro::construct_old_gravity_source() 10 0.01442 0.01493 0.01543 0.38% Amr::writePlotFile() 2 0.009022 0.01348 0.01503 0.37% Castro::construct_new_source() 50 0.007439 0.008251 0.009171 0.22% Castro::enforce_min_density() 62 0.006402 0.007082 0.007644 0.19% main() 1 0.005816 0.006497 0.007239 0.18% Gravity::get_new_grav_vector() 11 0.004402 0.004992 0.005623 0.14% Amr::coarseTimeStep() 10 0.001453 0.002677 0.003602 0.09% Gravity::get_old_grav_vector() 10 0.002322 0.002932 0.003138 0.08% Castro::finalize_do_advance() 10 0.001109 0.001236 0.001679 0.04% AmrLevel::FillPatch() 41 0.001065 0.001147 0.001247 0.03% Amr::timeStep() 10 0.0001781 0.0002657 0.0004474 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003031 0.0003288 0.0003686 0.01% Castro::clean_state() 62 0.0001789 0.0002049 0.0002421 0.01% Castro::do_advance_ctu() 10 0.0001612 0.0001886 0.0002173 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001432 0.0001613 0.0001866 0.00% StateDataPhysBCFunct::() 41 0.0001164 0.0001342 0.0001438 0.00% Castro::do_old_sources() 10 8.881e-05 0.0001202 0.0001361 0.00% Castro::construct_old_source() 50 9.56e-05 0.0001096 0.0001293 0.00% FabArray::ParallelCopy() 41 8.935e-05 0.000109 0.000124 0.00% FillPatchSingleLevel 41 8.432e-05 9.953e-05 0.0001182 0.00% Castro::Castro() 1 6.016e-05 7.917e-05 0.0001003 0.00% Amr::FinalizeInit() 1 4.063e-06 1.556e-05 9.243e-05 0.00% Castro::do_new_sources() 10 6.046e-05 7.468e-05 8.397e-05 0.00% Castro::apply_source_to_state() 20 5.375e-05 6.506e-05 8.134e-05 0.00% Castro::subcycle_advance_ctu() 10 5.638e-05 6.611e-05 7.693e-05 0.00% Castro::advance() 10 4.903e-05 5.855e-05 7.612e-05 0.00% Castro::construct_old_gravity() 10 3.869e-05 4.832e-05 6.68e-05 0.00% Castro::construct_new_gravity() 10 2.984e-05 4.018e-05 5.78e-05 0.00% Amr::defBaseLevel() 1 2.622e-05 3.853e-05 4.524e-05 0.00% Castro::expand_state() 10 2.706e-05 3.604e-05 4.293e-05 0.00% Castro::post_init() 1 8.252e-06 1.324e-05 3.453e-05 0.00% Castro::check_for_nan() 20 2.616e-05 2.922e-05 3.222e-05 0.00% Castro::post_timestep() 10 1.674e-05 2.263e-05 2.942e-05 0.00% Amr::initialInit() 1 1.256e-06 3.157e-06 1.119e-05 0.00% Castro::computeNewDt() 9 8.46e-06 9.367e-06 1.064e-05 0.00% Amr::InitializeInit() 1 2.902e-06 3.391e-06 6.052e-06 0.00% Castro::computeInitialDt() 2 2.89e-06 3.491e-06 3.84e-06 0.00% Amr::init() 1 1.952e-06 2.646e-06 3.66e-06 0.00% Other 200 0.0173 0.0202 0.02194 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.081 4.082 4.082 100.00% Amr::coarseTimeStep() 10 3.872 3.872 3.872 94.85% Amr::timeStep() 10 3.858 3.859 3.86 94.54% Castro::advance() 10 3.842 3.843 3.843 94.14% Castro::subcycle_advance_ctu() 10 3.74 3.744 3.746 91.76% Castro::do_advance_ctu() 10 3.74 3.744 3.746 91.76% Castro::construct_ctu_hydro_source() 10 2.855 2.86 2.864 70.16% check_for_negative_density() 10 0.01051 0.2333 0.4407 10.79% Gravity::make_radial_gravity() 21 0.3197 0.3327 0.3512 8.60% AmrLevel::FillPatch() 41 0.2617 0.2768 0.2914 7.14% Castro::initialize_do_advance() 10 0.2131 0.2263 0.238 5.83% FillPatchIterator::Initialize 41 0.222 0.2295 0.2376 5.82% Gravity::get_new_grav_vector() 11 0.2282 0.2289 0.2302 5.64% Castro::construct_old_gravity() 10 0.1928 0.2034 0.2177 5.33% Gravity::get_old_grav_vector() 10 0.1919 0.2025 0.217 5.32% Castro::construct_new_gravity() 10 0.2052 0.206 0.2072 5.08% Amr::init() 1 0.1896 0.1897 0.1898 4.65% Amr::initialInit() 1 0.1729 0.1733 0.1734 4.25% Castro::expand_state() 10 0.1457 0.1585 0.1715 4.20% FillPatchIterator::FillFromLevel0() 41 0.1562 0.1583 0.1614 3.95% FillPatchSingleLevel 41 0.156 0.1581 0.1612 3.95% Amr::InitializeInit() 1 0.07335 0.1085 0.1465 3.59% Amr::defBaseLevel() 1 0.07335 0.1085 0.1465 3.59% Castro::do_old_sources() 10 0.129 0.1308 0.1331 3.26% Castro::initData() 1 0.05419 0.09047 0.128 3.13% Castro::clean_state() 62 0.1195 0.1219 0.1251 3.06% FabArray::ParallelCopy() 41 0.1142 0.1182 0.123 3.01% amrex::Copy() 193 0.1005 0.1106 0.1227 3.01% Castro::estTimeStep() 21 0.02568 0.06604 0.1027 2.52% Amr::FinalizeInit() 1 0.02686 0.06479 0.1001 2.45% Castro::initialize_advance() 10 0.09166 0.09371 0.09812 2.40% FabArray::setVal() 143 0.09078 0.0948 0.09794 2.40% Castro::do_new_sources() 10 0.0757 0.07972 0.08367 2.05% Castro::computeInitialDt() 2 0.002255 0.04027 0.07544 1.85% Castro::computeTemp() 63 0.07002 0.07192 0.07527 1.84% FabArray::ParallelCopy_finish() 41 0.05135 0.05774 0.06558 1.61% FabArray::ParallelCopy_nowait() 41 0.05734 0.06034 0.06279 1.54% Castro::reset_internal_energy(MultiFab) 63 0.04879 0.04999 0.05221 1.28% Castro::reset_internal_energy(Fab) 1008 0.04847 0.04967 0.05188 1.27% Castro::normalize_species() 62 0.04273 0.04357 0.04581 1.12% Castro::construct_new_source() 50 0.03733 0.04121 0.04488 1.10% StateDataPhysBCFunct::() 41 0.03633 0.03982 0.04281 1.05% StateData::FillBoundary(geom) 41 0.0362 0.03968 0.04268 1.05% Castro::construct_new_gravity_source() 10 0.02979 0.03296 0.03593 0.88% Amr::writePlotFile() 2 0.0294 0.02952 0.02996 0.73% Gravity::interpolate_monopole_grav() 21 0.02805 0.02914 0.02994 0.73% Castro::post_init() 1 0.02391 0.02414 0.02426 0.59% FabArray::setDomainBndry() 41 0.01579 0.01969 0.023 0.56% Castro::finalize_do_advance() 10 0.0128 0.01723 0.02187 0.54% Castro::apply_source_to_state() 20 0.0169 0.01859 0.02009 0.49% FabArray::Saxpy() 20 0.01684 0.01852 0.02001 0.49% Castro::post_timestep() 10 0.01535 0.01579 0.01636 0.40% VisMF::Write(FabArray) 2 0.01006 0.01175 0.01603 0.39% Castro::check_for_nan() 20 0.01168 0.01436 0.016 0.39% MultiFab::contains_nan() 20 0.01165 0.01433 0.01596 0.39% Castro::construct_old_source() 50 0.01452 0.01503 0.01552 0.38% Castro::construct_old_gravity_source() 10 0.01442 0.01493 0.01543 0.38% Castro::Castro() 1 0.009325 0.01137 0.01208 0.30% Castro::computeNewDt() 9 0.009787 0.009795 0.0098 0.24% Castro::enforce_min_density() 62 0.006402 0.007082 0.007644 0.19% Other 200 0.02862 0.03296 0.03606 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-35-g7c2ef81fc14d) finalized