Initializing AMReX (24.08-35-g7c2ef81fc14d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-35-g7c2ef81fc14d) initialized Starting run at 05:21:22 UTC on 2024-08-30. Successfully read inputs file ... Castro git describe: 24.08-8-g2b3c8537a AMReX git describe: 24.08-35-g7c2ef81fc Microphysics git describe: 24.08-7-gfb8b0080 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014889499 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.36205227 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.374013066 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.362275547 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.376473761 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365873844 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.348317636 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.340549582 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.345920095 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.346646667 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.354596991 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008224963 seconds Ending run at 05:21:26 UTC on 2024-08-30. Run time = 3.800088797 Run time without initialization = 3.591119949 Average number of zones advanced per microsecond: 0.730 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.7994 ... 3.7997 ... 3.8001 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3470 2.4684 2.6126 68.75% check_for_negative_density() 10 0.08019 0.2247 0.3461 9.11% Gravity::make_radial_gravity() 21 0.2921 0.2985 0.3098 8.15% Castro::initData() 1 0.04831 0.08869 0.1424 3.75% Castro::estTimeStep() 21 0.02489 0.08238 0.1276 3.36% amrex::Copy() 193 0.07601 0.08514 0.09032 2.38% FabArray::setVal() 143 0.07029 0.07374 0.07748 2.04% FabArray::ParallelCopy_finish() 41 0.04244 0.04743 0.05193 1.37% Castro::reset_internal_energy(Fab) 1008 0.04651 0.0485 0.05097 1.34% Castro::normalize_species() 62 0.0417 0.04311 0.04501 1.18% FabArray::ParallelCopy_nowait() 41 0.04252 0.04367 0.0446 1.17% FillPatchIterator::Initialize 41 0.02825 0.03372 0.03651 0.96% StateData::FillBoundary(geom) 41 0.03043 0.03353 0.03597 0.95% Castro::construct_new_gravity_source() 10 0.02579 0.02747 0.03005 0.79% Gravity::interpolate_monopole_grav() 21 0.02754 0.02895 0.02943 0.77% Castro::computeTemp() 63 0.02042 0.02133 0.02216 0.58% Castro::initialize_do_advance() 10 0.01577 0.01829 0.01936 0.51% FabArray::Saxpy() 20 0.0135 0.01492 0.01658 0.44% FabArray::setDomainBndry() 41 0.008745 0.01201 0.0149 0.39% Castro::initialize_advance() 10 0.009744 0.01153 0.0136 0.36% MultiFab::contains_nan() 20 0.01036 0.01143 0.01258 0.33% VisMF::Write(FabArray) 2 0.009335 0.009951 0.01253 0.33% Castro::construct_old_gravity_source() 10 0.01011 0.01097 0.01175 0.31% Amr::writePlotFile() 2 0.007773 0.01023 0.01063 0.28% Castro::initMFs() 1 0.006444 0.007074 0.007607 0.20% Castro::construct_new_source() 50 0.006832 0.007186 0.007598 0.20% main() 1 0.004659 0.004961 0.005428 0.14% Gravity::get_new_grav_vector() 11 0.003426 0.004255 0.005322 0.14% Amr::coarseTimeStep() 10 0.001112 0.002304 0.003057 0.08% Gravity::get_old_grav_vector() 10 0.001604 0.002207 0.002595 0.07% Castro::finalize_do_advance() 10 0.001078 0.001183 0.001584 0.04% AmrLevel::FillPatch() 41 0.001081 0.001159 0.001246 0.03% Amr::timeStep() 10 0.0001847 0.0002528 0.0005227 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002891 0.0002988 0.0003267 0.01% Castro::clean_state() 62 0.0001549 0.0001725 0.0002333 0.01% Castro::do_advance_ctu() 10 0.0001359 0.0001679 0.0002257 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001006 0.0001196 0.0001527 0.00% Amr::FinalizeInit() 1 3.635e-06 2.102e-05 0.0001318 0.00% Castro::do_old_sources() 10 9.636e-05 0.0001055 0.0001298 0.00% StateDataPhysBCFunct::() 41 0.0001003 0.0001075 0.0001185 0.00% FabArray::ParallelCopy() 41 8.395e-05 9.352e-05 0.0001091 0.00% Castro::construct_old_source() 50 7.818e-05 9.362e-05 0.0001081 0.00% FillPatchSingleLevel 41 7.082e-05 8.278e-05 0.0001047 0.00% Castro::do_new_sources() 10 6.667e-05 7.391e-05 8.343e-05 0.00% Castro::Castro() 1 5.457e-05 6.54e-05 7.326e-05 0.00% Castro::apply_source_to_state() 20 4.233e-05 5.157e-05 6.781e-05 0.00% Castro::subcycle_advance_ctu() 10 4.389e-05 5.464e-05 6.345e-05 0.00% Castro::advance() 10 4.265e-05 4.649e-05 5.456e-05 0.00% Castro::construct_old_gravity() 10 3.275e-05 4.121e-05 5.198e-05 0.00% Castro::construct_new_gravity() 10 2.83e-05 3.49e-05 4.532e-05 0.00% Amr::defBaseLevel() 1 2.49e-05 3.437e-05 3.859e-05 0.00% Castro::check_for_nan() 20 2.326e-05 2.659e-05 3.314e-05 0.00% Castro::expand_state() 10 2.17e-05 2.502e-05 2.908e-05 0.00% Castro::post_timestep() 10 1.557e-05 1.72e-05 1.88e-05 0.00% Castro::computeNewDt() 9 7.704e-06 9.357e-06 1.146e-05 0.00% Castro::post_init() 1 8.639e-06 9.557e-06 1.131e-05 0.00% Amr::InitializeInit() 1 2.704e-06 3.333e-06 5.962e-06 0.00% Castro::computeInitialDt() 2 3.116e-06 3.6e-06 4.208e-06 0.00% Amr::init() 1 2.112e-06 2.575e-06 3.216e-06 0.00% Amr::initialInit() 1 1.468e-06 1.827e-06 2.231e-06 0.00% Other 261 0.0162 0.01862 0.02003 0.53% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.799 3.8 3.8 100.00% Amr::coarseTimeStep() 10 3.578 3.578 3.578 94.14% Amr::timeStep() 10 3.564 3.565 3.566 93.84% Castro::advance() 10 3.548 3.549 3.55 93.41% Castro::subcycle_advance_ctu() 10 3.469 3.472 3.475 91.46% Castro::do_advance_ctu() 10 3.469 3.472 3.475 91.45% Castro::construct_ctu_hydro_source() 10 2.712 2.716 2.725 71.72% check_for_negative_density() 10 0.08019 0.2247 0.3461 9.11% Gravity::make_radial_gravity() 21 0.3099 0.316 0.3256 8.57% Gravity::get_new_grav_vector() 11 0.2114 0.2154 0.218 5.74% AmrLevel::FillPatch() 41 0.1911 0.207 0.2171 5.71% Amr::init() 1 0.2084 0.2086 0.2087 5.49% Castro::construct_old_gravity() 10 0.1803 0.1855 0.194 5.11% Amr::initialInit() 1 0.1934 0.1936 0.1937 5.10% Gravity::get_old_grav_vector() 10 0.1797 0.1848 0.1932 5.09% Castro::construct_new_gravity() 10 0.1869 0.1904 0.1923 5.06% Castro::initialize_do_advance() 10 0.1628 0.1751 0.1826 4.80% FillPatchIterator::Initialize 41 0.1624 0.1709 0.1769 4.66% Amr::InitializeInit() 1 0.06772 0.1095 0.1644 4.33% Amr::defBaseLevel() 1 0.06772 0.1095 0.1644 4.33% Castro::initData() 1 0.05207 0.09248 0.1465 3.85% FillPatchIterator::FillFromLevel0() 41 0.1219 0.1251 0.1282 3.37% FillPatchSingleLevel 41 0.1218 0.125 0.1281 3.37% Castro::estTimeStep() 21 0.02489 0.08238 0.1276 3.36% Castro::expand_state() 10 0.1067 0.1191 0.127 3.34% Amr::FinalizeInit() 1 0.02917 0.08405 0.1259 3.31% Castro::clean_state() 62 0.115 0.1186 0.1232 3.24% Castro::do_old_sources() 10 0.09569 0.09945 0.1011 2.66% Castro::computeInitialDt() 2 0.002463 0.05732 0.09916 2.61% FabArray::ParallelCopy() 41 0.08721 0.09129 0.09503 2.50% amrex::Copy() 193 0.07601 0.08514 0.09032 2.38% FabArray::setVal() 143 0.07029 0.07374 0.07748 2.04% Castro::do_new_sources() 10 0.06802 0.07236 0.07729 2.03% Castro::initialize_advance() 10 0.06971 0.07272 0.07582 2.00% Castro::computeTemp() 63 0.06723 0.07013 0.07306 1.92% FabArray::ParallelCopy_finish() 41 0.04244 0.04743 0.05193 1.37% Castro::reset_internal_energy(MultiFab) 63 0.04681 0.0488 0.05126 1.35% Castro::reset_internal_energy(Fab) 1008 0.04651 0.0485 0.05097 1.34% Castro::normalize_species() 62 0.0417 0.04311 0.04501 1.18% FabArray::ParallelCopy_nowait() 41 0.04262 0.04376 0.04468 1.18% Castro::construct_new_source() 50 0.03262 0.03466 0.03765 0.99% StateDataPhysBCFunct::() 41 0.03053 0.03364 0.03608 0.95% StateData::FillBoundary(geom) 41 0.03043 0.03353 0.03597 0.95% Castro::construct_new_gravity_source() 10 0.02579 0.02747 0.03005 0.79% Gravity::interpolate_monopole_grav() 21 0.02754 0.02895 0.02943 0.77% Castro::post_init() 1 0.02602 0.02621 0.02639 0.69% Amr::writePlotFile() 2 0.0233 0.02336 0.02339 0.62% Castro::finalize_do_advance() 10 0.01254 0.01722 0.02175 0.57% Castro::apply_source_to_state() 20 0.01354 0.01497 0.01663 0.44% FabArray::Saxpy() 20 0.0135 0.01492 0.01658 0.44% Castro::post_timestep() 10 0.01562 0.01592 0.01624 0.43% FabArray::setDomainBndry() 41 0.008745 0.01201 0.0149 0.39% Castro::check_for_nan() 20 0.01039 0.01146 0.01261 0.33% MultiFab::contains_nan() 20 0.01036 0.01143 0.01258 0.33% VisMF::Write(FabArray) 2 0.009335 0.009951 0.01253 0.33% Castro::construct_old_source() 50 0.0102 0.01106 0.01186 0.31% Castro::construct_old_gravity_source() 10 0.01011 0.01097 0.01175 0.31% Castro::Castro() 1 0.009616 0.01083 0.01166 0.31% Castro::computeNewDt() 9 0.00902 0.009035 0.009055 0.24% Castro::initMFs() 1 0.006444 0.007074 0.007607 0.20% Other 261 0.02643 0.03004 0.03265 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-35-g7c2ef81fc14d) finalized