Initializing AMReX (24.09-1-gebd9a1155338)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-1-gebd9a1155338) initialized Starting run at 05:28:57 UTC on 2024-09-02. Successfully read inputs file ... Castro git describe: 24.09 AMReX git describe: 24.09-1-gebd9a1155 Microphysics git describe: 24.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014510097 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353960872 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.364506009 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.370782864 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.381899695 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.332090785 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30805848 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30911552 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308569855 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309646092 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308703697 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007926814 seconds Ending run at 05:29:01 UTC on 2024-09-02. Run time = 3.549913543 Run time without initialization = 3.359957629 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5493 ... 3.5496 ... 3.5500 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2294 2.3089 2.4451 68.88% Gravity::make_radial_gravity() 21 0.3058 0.3171 0.3252 9.16% check_for_negative_density() 10 0.0263 0.1669 0.249 7.01% Castro::initData() 1 0.04752 0.08525 0.1228 3.46% Castro::estTimeStep() 21 0.02638 0.07224 0.117 3.30% amrex::Copy() 193 0.06194 0.07473 0.08228 2.32% FabArray::setVal() 143 0.06139 0.06797 0.07735 2.18% FabArray::ParallelCopy_finish() 41 0.03877 0.05283 0.07618 2.15% Castro::reset_internal_energy(Fab) 1008 0.04291 0.04671 0.04953 1.40% Castro::normalize_species() 62 0.04144 0.04364 0.04538 1.28% FabArray::ParallelCopy_nowait() 41 0.0342 0.03867 0.03991 1.12% StateData::FillBoundary(geom) 41 0.03067 0.03252 0.03646 1.03% FillPatchIterator::Initialize 41 0.02831 0.03136 0.03298 0.93% Gravity::interpolate_monopole_grav() 21 0.02728 0.02926 0.03114 0.88% Castro::construct_new_gravity_source() 10 0.02367 0.02557 0.02856 0.80% Castro::computeTemp() 63 0.01937 0.02071 0.02216 0.62% Castro::initialize_do_advance() 10 0.01391 0.01686 0.01919 0.54% FabArray::setDomainBndry() 41 0.007733 0.01063 0.01246 0.35% FabArray::Saxpy() 20 0.01016 0.01148 0.01242 0.35% Castro::initialize_advance() 10 0.005493 0.009945 0.01239 0.35% VisMF::Write(FabArray) 2 0.009155 0.009736 0.01195 0.34% MultiFab::contains_nan() 20 0.01015 0.01084 0.01177 0.33% Amr::writePlotFile() 2 0.007994 0.01019 0.01109 0.31% Castro::construct_old_gravity_source() 10 0.006546 0.008809 0.009408 0.27% Castro::initMFs() 1 0.006403 0.006944 0.008094 0.23% Castro::construct_new_source() 50 0.005091 0.005711 0.005946 0.17% Gravity::get_new_grav_vector() 11 0.003307 0.003894 0.00556 0.16% main() 1 0.003581 0.003948 0.004322 0.12% Amr::coarseTimeStep() 10 0.001794 0.002457 0.003298 0.09% Gravity::get_old_grav_vector() 10 0.001475 0.001959 0.002335 0.07% Castro::finalize_do_advance() 10 0.0004066 0.0009417 0.001202 0.03% AmrLevel::FillPatch() 41 0.0007303 0.0008995 0.0009722 0.03% Amr::timeStep() 10 0.0001626 0.0002247 0.0004733 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002669 0.0002839 0.0003014 0.01% Castro::clean_state() 62 0.0001441 0.0001786 0.0002136 0.01% Castro::do_advance_ctu() 10 0.0001225 0.0001464 0.0001701 0.00% FillPatchIterator::FillFromLevel0() 41 9.384e-05 0.0001085 0.0001369 0.00% StateDataPhysBCFunct::() 41 9.692e-05 0.0001039 0.0001149 0.00% Castro::do_old_sources() 10 6.451e-05 8.117e-05 0.0001003 0.00% FabArray::ParallelCopy() 41 7.495e-05 8.574e-05 9.798e-05 0.00% Castro::Castro() 1 5.479e-05 7.294e-05 9.741e-05 0.00% Amr::FinalizeInit() 1 3.611e-06 1.6e-05 9.433e-05 0.00% FillPatchSingleLevel 41 6.891e-05 7.226e-05 8.256e-05 0.00% Castro::construct_old_source() 50 5.035e-05 7.11e-05 8.128e-05 0.00% Castro::do_new_sources() 10 4.942e-05 5.565e-05 6.191e-05 0.00% Castro::subcycle_advance_ctu() 10 3.482e-05 4.772e-05 6.094e-05 0.00% Amr::defBaseLevel() 1 3.693e-05 4.558e-05 6.015e-05 0.00% Castro::apply_source_to_state() 20 3.424e-05 4.41e-05 5.391e-05 0.00% Castro::advance() 10 3.962e-05 4.393e-05 4.905e-05 0.00% Castro::construct_old_gravity() 10 3.202e-05 3.829e-05 4.799e-05 0.00% Castro::construct_new_gravity() 10 2.866e-05 3.448e-05 4.024e-05 0.00% Castro::check_for_nan() 20 2.092e-05 2.407e-05 2.796e-05 0.00% Castro::expand_state() 10 1.846e-05 2.095e-05 2.49e-05 0.00% Castro::post_timestep() 10 1.544e-05 1.726e-05 1.897e-05 0.00% Castro::post_init() 1 8.046e-06 1.127e-05 1.582e-05 0.00% Amr::InitializeInit() 1 2.893e-06 4.736e-06 1.164e-05 0.00% Amr::initialInit() 1 1.349e-06 3.092e-06 1.097e-05 0.00% Castro::computeNewDt() 9 7.719e-06 8.424e-06 9.1e-06 0.00% Castro::computeInitialDt() 2 3.324e-06 4.362e-06 6.754e-06 0.00% Amr::init() 1 2.015e-06 2.529e-06 3.044e-06 0.00% Other 261 0.01588 0.01816 0.01979 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.549 3.55 3.55 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 94.31% Amr::timeStep() 10 3.334 3.335 3.335 93.96% Castro::advance() 10 3.318 3.319 3.319 93.50% Castro::subcycle_advance_ctu() 10 3.238 3.245 3.251 91.58% Castro::do_advance_ctu() 10 3.238 3.245 3.251 91.58% Castro::construct_ctu_hydro_source() 10 2.495 2.499 2.504 70.55% Gravity::make_radial_gravity() 21 0.3209 0.3326 0.3411 9.61% check_for_negative_density() 10 0.0263 0.1669 0.249 7.01% Gravity::get_new_grav_vector() 11 0.2193 0.2235 0.2264 6.38% AmrLevel::FillPatch() 41 0.1808 0.197 0.2084 5.87% Castro::construct_old_gravity() 10 0.184 0.1915 0.1992 5.61% Castro::construct_new_gravity() 10 0.1952 0.1971 0.1992 5.61% Gravity::get_old_grav_vector() 10 0.1833 0.1909 0.1986 5.60% Amr::init() 1 0.1894 0.1896 0.1896 5.34% FillPatchIterator::Initialize 41 0.151 0.1665 0.1777 5.01% Amr::initialInit() 1 0.1747 0.175 0.1752 4.93% Castro::initialize_do_advance() 10 0.1577 0.166 0.1717 4.84% Amr::InitializeInit() 1 0.06702 0.1056 0.1442 4.06% Amr::defBaseLevel() 1 0.06701 0.1056 0.1442 4.06% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1245 0.1417 3.99% FillPatchSingleLevel 41 0.1114 0.1244 0.1416 3.99% Castro::initData() 1 0.05125 0.08894 0.1263 3.56% Castro::clean_state() 62 0.1099 0.1168 0.122 3.44% Castro::expand_state() 10 0.1034 0.1132 0.1205 3.39% Castro::estTimeStep() 21 0.02638 0.07224 0.117 3.30% FabArray::ParallelCopy() 41 0.07887 0.09167 0.1105 3.11% Amr::FinalizeInit() 1 0.03048 0.06936 0.1081 3.05% Castro::do_old_sources() 10 0.08601 0.08963 0.09202 2.59% amrex::Copy() 193 0.06194 0.07473 0.08228 2.32% Castro::computeInitialDt() 2 0.002582 0.04116 0.07979 2.25% FabArray::setVal() 143 0.06139 0.06797 0.07735 2.18% Castro::initialize_advance() 10 0.06339 0.06948 0.07691 2.17% FabArray::ParallelCopy_finish() 41 0.03877 0.05283 0.07618 2.15% Castro::do_new_sources() 10 0.05878 0.06492 0.07349 2.07% Castro::computeTemp() 63 0.06257 0.06771 0.072 2.03% Castro::reset_internal_energy(MultiFab) 63 0.0432 0.04699 0.04983 1.40% Castro::reset_internal_energy(Fab) 1008 0.04291 0.04671 0.04953 1.40% Castro::normalize_species() 62 0.04144 0.04364 0.04538 1.28% FabArray::ParallelCopy_nowait() 41 0.03429 0.03875 0.04001 1.13% StateDataPhysBCFunct::() 41 0.03078 0.03262 0.03657 1.03% StateData::FillBoundary(geom) 41 0.03067 0.03252 0.03646 1.03% Castro::construct_new_source() 50 0.02905 0.03129 0.0345 0.97% Gravity::interpolate_monopole_grav() 21 0.02728 0.02926 0.03114 0.88% Castro::finalize_do_advance() 10 0.0135 0.02266 0.03035 0.85% Castro::construct_new_gravity_source() 10 0.02367 0.02557 0.02856 0.80% Castro::post_init() 1 0.02509 0.02755 0.02802 0.79% Amr::writePlotFile() 2 0.02246 0.02258 0.02285 0.64% Castro::post_timestep() 10 0.01528 0.01596 0.01663 0.47% Castro::apply_source_to_state() 20 0.0102 0.01153 0.01247 0.35% FabArray::setDomainBndry() 41 0.007733 0.01063 0.01246 0.35% FabArray::Saxpy() 20 0.01016 0.01148 0.01242 0.35% VisMF::Write(FabArray) 2 0.009155 0.009736 0.01195 0.34% Castro::check_for_nan() 20 0.01018 0.01087 0.01179 0.33% MultiFab::contains_nan() 20 0.01015 0.01084 0.01177 0.33% Castro::Castro() 1 0.01003 0.01072 0.01172 0.33% Castro::construct_old_source() 50 0.006597 0.00888 0.00949 0.27% Castro::construct_old_gravity_source() 10 0.006546 0.008809 0.009408 0.27% Castro::computeNewDt() 9 0.009355 0.009374 0.00939 0.26% Castro::initMFs() 1 0.006403 0.006944 0.008094 0.23% Other 261 0.02581 0.02956 0.03446 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 40 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.09-1-gebd9a1155338) finalized