Initializing AMReX (24.09-6-gde4dc974dda7)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-6-gde4dc974dda7) initialized Starting run at 05:39:40 UTC on 2024-09-03. Successfully read inputs file ... Castro git describe: 24.09 AMReX git describe: 24.09-6-gde4dc974d Microphysics git describe: 24.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014897556 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347903041 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341311575 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.338844109 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.327637997 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.383797456 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313860311 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.306120406 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305407876 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306637304 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305637349 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008005437 seconds Ending run at 05:39:43 UTC on 2024-09-03. Run time = 3.473986226 Run time without initialization = 3.289999969 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4732 ... 3.4738 ... 3.4741 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2651 2.3090 2.3412 67.39% Gravity::make_radial_gravity() 21 0.2902 0.2988 0.3082 8.87% check_for_negative_density() 10 0.05584 0.0889 0.1352 3.89% Castro::initData() 1 0.04836 0.08529 0.1208 3.48% Castro::estTimeStep() 21 0.02434 0.06276 0.1015 2.92% amrex::Copy() 193 0.07262 0.08344 0.09477 2.73% FabArray::ParallelCopy_finish() 41 0.04374 0.06379 0.08148 2.35% FabArray::setVal() 143 0.06815 0.07072 0.07655 2.20% Castro::reset_internal_energy(Fab) 1008 0.04239 0.04565 0.04752 1.37% Castro::normalize_species() 62 0.04154 0.04246 0.04378 1.26% FabArray::ParallelCopy_nowait() 41 0.03965 0.0418 0.04272 1.23% FillPatchIterator::Initialize 41 0.02779 0.03407 0.03702 1.07% Gravity::interpolate_monopole_grav() 21 0.02736 0.03012 0.03569 1.03% StateData::FillBoundary(geom) 41 0.03031 0.03335 0.03567 1.03% Castro::construct_new_gravity_source() 10 0.02369 0.02484 0.02785 0.80% Castro::computeTemp() 63 0.01906 0.02033 0.02124 0.61% Castro::initialize_do_advance() 10 0.01195 0.01664 0.01773 0.51% Castro::initialize_advance() 10 0.01057 0.01228 0.01419 0.41% FabArray::Saxpy() 20 0.01159 0.01259 0.0132 0.38% FabArray::setDomainBndry() 41 0.007362 0.01054 0.01281 0.37% VisMF::Write(FabArray) 2 0.009092 0.009795 0.01228 0.35% Amr::writePlotFile() 2 0.007953 0.01052 0.01137 0.33% MultiFab::contains_nan() 20 0.009011 0.01026 0.01102 0.32% Castro::construct_old_gravity_source() 10 0.007802 0.009259 0.009827 0.28% Castro::initMFs() 1 0.006405 0.006746 0.008345 0.24% Castro::construct_new_source() 50 0.006111 0.006333 0.00643 0.19% main() 1 0.003335 0.00396 0.004247 0.12% Gravity::get_new_grav_vector() 11 0.002931 0.00347 0.003942 0.11% Amr::coarseTimeStep() 10 0.0008592 0.001588 0.002704 0.08% Gravity::get_old_grav_vector() 10 0.001607 0.00216 0.002574 0.07% AmrLevel::FillPatch() 41 0.0008097 0.0009691 0.001319 0.04% Castro::finalize_do_advance() 10 0.001113 0.00115 0.001189 0.03% Amr::timeStep() 10 0.0001806 0.0002225 0.0004126 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002941 0.000305 0.0003218 0.01% Castro::Castro() 1 5.418e-05 0.0001047 0.0002716 0.01% Castro::do_advance_ctu() 10 0.0001269 0.0001515 0.0001892 0.01% Castro::clean_state() 62 0.0001402 0.0001589 0.0001725 0.00% StateDataPhysBCFunct::() 41 0.0001127 0.0001351 0.0001623 0.00% FillPatchIterator::FillFromLevel0() 41 9.536e-05 0.0001107 0.0001436 0.00% FabArray::ParallelCopy() 41 9.462e-05 0.0001022 0.000116 0.00% Castro::do_old_sources() 10 7.748e-05 9.139e-05 0.0001041 0.00% FillPatchSingleLevel 41 7.193e-05 8.321e-05 0.0001003 0.00% Castro::construct_old_source() 50 6.645e-05 7.562e-05 9.084e-05 0.00% Amr::FinalizeInit() 1 3.497e-06 1.467e-05 8.179e-05 0.00% Castro::do_new_sources() 10 5.797e-05 6.25e-05 6.599e-05 0.00% Castro::apply_source_to_state() 20 4.386e-05 5.351e-05 6.522e-05 0.00% Amr::defBaseLevel() 1 3.751e-05 4.659e-05 5.831e-05 0.00% Castro::subcycle_advance_ctu() 10 4.943e-05 5.368e-05 5.697e-05 0.00% Castro::advance() 10 3.695e-05 4.739e-05 5.477e-05 0.00% Castro::construct_new_gravity() 10 2.904e-05 3.501e-05 4.876e-05 0.00% Castro::construct_old_gravity() 10 3.239e-05 3.975e-05 4.781e-05 0.00% Castro::check_for_nan() 20 2.409e-05 2.677e-05 3.262e-05 0.00% Castro::expand_state() 10 2.443e-05 2.64e-05 3.015e-05 0.00% Castro::post_timestep() 10 1.547e-05 1.804e-05 2.067e-05 0.00% Amr::initialInit() 1 1.351e-06 4.109e-06 1.925e-05 0.00% Castro::post_init() 1 9.489e-06 1.112e-05 1.282e-05 0.00% Amr::InitializeInit() 1 2.391e-06 3.599e-06 9.544e-06 0.00% Castro::computeNewDt() 9 7.639e-06 8.694e-06 9.465e-06 0.00% Castro::computeInitialDt() 2 3.74e-06 4.895e-06 9.093e-06 0.00% Amr::init() 1 1.658e-06 2.118e-06 2.608e-06 0.00% Other 261 0.01624 0.01824 0.01977 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.473 3.474 3.474 100.00% Amr::coarseTimeStep() 10 3.278 3.278 3.278 94.35% Amr::timeStep() 10 3.265 3.266 3.267 94.04% Castro::advance() 10 3.25 3.25 3.25 93.56% Castro::subcycle_advance_ctu() 10 3.174 3.175 3.177 91.45% Castro::do_advance_ctu() 10 3.173 3.175 3.177 91.45% Castro::construct_ctu_hydro_source() 10 2.416 2.418 2.421 69.69% Gravity::make_radial_gravity() 21 0.3057 0.3149 0.3229 9.29% AmrLevel::FillPatch() 41 0.2037 0.2169 0.227 6.53% Gravity::get_new_grav_vector() 11 0.2064 0.2079 0.2093 6.02% Castro::construct_old_gravity() 10 0.1962 0.2026 0.2083 5.99% Gravity::get_old_grav_vector() 10 0.1955 0.202 0.2075 5.97% FillPatchIterator::Initialize 41 0.1688 0.1841 0.1918 5.52% Castro::construct_new_gravity() 10 0.184 0.185 0.1861 5.36% Amr::init() 1 0.1835 0.1837 0.1837 5.29% Castro::initialize_do_advance() 10 0.1546 0.1635 0.1711 4.93% Amr::initialInit() 1 0.1683 0.1685 0.1686 4.85% FillPatchIterator::FillFromLevel0() 41 0.1211 0.1395 0.1533 4.41% FillPatchSingleLevel 41 0.121 0.1394 0.1531 4.41% Amr::InitializeInit() 1 0.06894 0.106 0.1416 4.08% Amr::defBaseLevel() 1 0.06894 0.106 0.1416 4.08% check_for_negative_density() 10 0.05584 0.0889 0.1352 3.89% Castro::initData() 1 0.05241 0.08916 0.1248 3.59% FabArray::ParallelCopy() 41 0.08634 0.1058 0.1213 3.49% Castro::clean_state() 62 0.1097 0.1141 0.1177 3.39% Castro::expand_state() 10 0.1046 0.1104 0.1164 3.35% Castro::do_old_sources() 10 0.09511 0.1046 0.11 3.17% Castro::estTimeStep() 21 0.02434 0.06276 0.1015 2.92% Amr::FinalizeInit() 1 0.02663 0.06246 0.09962 2.87% amrex::Copy() 193 0.07262 0.08344 0.09477 2.73% FabArray::ParallelCopy_finish() 41 0.04374 0.06379 0.08148 2.35% FabArray::setVal() 143 0.06815 0.07072 0.07655 2.20% Castro::computeInitialDt() 2 0.00228 0.03785 0.07495 2.16% Castro::initialize_advance() 10 0.06971 0.07189 0.07336 2.11% Castro::do_new_sources() 10 0.06175 0.06517 0.06981 2.01% Castro::computeTemp() 63 0.06176 0.06628 0.06858 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04269 0.04595 0.04783 1.38% Castro::reset_internal_energy(Fab) 1008 0.04239 0.04565 0.04752 1.37% Castro::normalize_species() 62 0.04154 0.04246 0.04378 1.26% FabArray::ParallelCopy_nowait() 41 0.03976 0.04189 0.04281 1.23% StateDataPhysBCFunct::() 41 0.03043 0.03349 0.03582 1.03% Gravity::interpolate_monopole_grav() 21 0.02736 0.03012 0.03569 1.03% StateData::FillBoundary(geom) 41 0.03031 0.03335 0.03567 1.03% Castro::construct_new_source() 50 0.02992 0.03117 0.03424 0.99% Castro::construct_new_gravity_source() 10 0.02369 0.02484 0.02785 0.80% Castro::post_init() 1 0.02397 0.02416 0.02432 0.70% Amr::writePlotFile() 2 0.02316 0.02326 0.02352 0.68% Castro::finalize_do_advance() 10 0.01337 0.01719 0.02063 0.59% Castro::post_timestep() 10 0.01479 0.01576 0.01663 0.48% Castro::apply_source_to_state() 20 0.01164 0.01264 0.01326 0.38% FabArray::Saxpy() 20 0.01159 0.01259 0.0132 0.38% FabArray::setDomainBndry() 41 0.007362 0.01054 0.01281 0.37% VisMF::Write(FabArray) 2 0.009092 0.009795 0.01228 0.35% Castro::Castro() 1 0.01067 0.01097 0.01174 0.34% Castro::check_for_nan() 20 0.009039 0.01029 0.01105 0.32% MultiFab::contains_nan() 20 0.009011 0.01026 0.01102 0.32% Castro::construct_old_source() 50 0.007875 0.009335 0.009918 0.29% Castro::construct_old_gravity_source() 10 0.007802 0.009259 0.009827 0.28% Castro::computeNewDt() 9 0.008885 0.008889 0.008893 0.26% Castro::initMFs() 1 0.006405 0.006746 0.008345 0.24% Other 261 0.0263 0.02898 0.03143 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6752 KiB 6757 KiB 6759 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4566 KiB 4569 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 226 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 224 KiB 231 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-6-gde4dc974dda7) finalized