Initializing AMReX (24.09-6-gde4dc974dda7)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-6-gde4dc974dda7) initialized Starting run at 05:21:35 UTC on 2024-09-04. Successfully read inputs file ... Castro git describe: 24.09-2-g97555d411 AMReX git describe: 24.09-6-gde4dc974d Microphysics git describe: 24.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015476496 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348624782 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341935749 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328769615 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.341710333 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370715278 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310075655 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305828659 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306758277 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307341773 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307980829 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007993854 seconds Ending run at 05:21:38 UTC on 2024-09-04. Run time = 3.475778134 Run time without initialization = 3.283042909 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4746 ... 3.4752 ... 3.4758 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2476 2.3101 2.3399 67.32% Gravity::make_radial_gravity() 21 0.2969 0.3114 0.3326 9.57% Castro::initData() 1 0.04864 0.09317 0.1275 3.67% check_for_negative_density() 10 0.03329 0.06087 0.1262 3.63% Castro::estTimeStep() 21 0.04019 0.07215 0.1167 3.36% FabArray::ParallelCopy_finish() 41 0.05388 0.06249 0.09445 2.72% amrex::Copy() 193 0.0656 0.08104 0.09393 2.70% FabArray::setVal() 143 0.06246 0.06623 0.07107 2.04% Castro::reset_internal_energy(Fab) 1008 0.04699 0.04869 0.05282 1.52% Castro::normalize_species() 62 0.04122 0.04329 0.04752 1.37% FabArray::ParallelCopy_nowait() 41 0.03447 0.04094 0.04244 1.22% StateData::FillBoundary(geom) 41 0.03148 0.0338 0.03629 1.04% FillPatchIterator::Initialize 41 0.02783 0.03303 0.03498 1.01% Gravity::interpolate_monopole_grav() 21 0.02741 0.02936 0.03024 0.87% Castro::construct_new_gravity_source() 10 0.02273 0.02401 0.02679 0.77% Castro::computeTemp() 63 0.02086 0.02134 0.0221 0.64% FabArray::Saxpy() 20 0.01123 0.01331 0.02059 0.59% Castro::initialize_do_advance() 10 0.01316 0.01642 0.01787 0.51% Amr::writePlotFile() 2 0.008024 0.01095 0.01393 0.40% FabArray::setDomainBndry() 41 0.006664 0.01075 0.01346 0.39% MultiFab::contains_nan() 20 0.009902 0.01126 0.01329 0.38% Castro::initialize_advance() 10 0.005399 0.0104 0.01312 0.38% VisMF::Write(FabArray) 2 0.00844 0.01016 0.0129 0.37% Castro::initMFs() 1 0.006633 0.007998 0.01084 0.31% Castro::construct_old_gravity_source() 10 0.006576 0.008813 0.009557 0.27% Castro::construct_new_source() 50 0.005815 0.006199 0.006594 0.19% main() 1 0.003489 0.004179 0.004778 0.14% Amr::coarseTimeStep() 10 0.00216 0.003608 0.00421 0.12% Gravity::get_new_grav_vector() 11 0.002931 0.003622 0.004028 0.12% Gravity::get_old_grav_vector() 10 0.001718 0.002515 0.003816 0.11% Castro::finalize_do_advance() 10 0.0005514 0.001142 0.001738 0.05% AmrLevel::FillPatch() 41 0.0007383 0.000979 0.001231 0.04% Amr::timeStep() 10 0.0001862 0.0002431 0.0004331 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002998 0.0003097 0.0003456 0.01% Castro::clean_state() 62 0.000153 0.0001717 0.0001961 0.01% Castro::do_advance_ctu() 10 0.0001348 0.0001555 0.0001721 0.00% StateDataPhysBCFunct::() 41 0.0001042 0.0001245 0.0001586 0.00% FillPatchIterator::FillFromLevel0() 41 9.001e-05 0.0001054 0.0001237 0.00% FabArray::ParallelCopy() 41 9.5e-05 9.856e-05 0.0001026 0.00% Castro::construct_old_source() 50 5.72e-05 7.558e-05 9.578e-05 0.00% Castro::do_old_sources() 10 7.95e-05 8.763e-05 9.368e-05 0.00% Amr::FinalizeInit() 1 3.804e-06 1.568e-05 9.337e-05 0.00% Castro::Castro() 1 5.512e-05 7.2e-05 8.967e-05 0.00% FillPatchSingleLevel 41 7.134e-05 7.939e-05 8.477e-05 0.00% Castro::subcycle_advance_ctu() 10 4.556e-05 5.388e-05 7.4e-05 0.00% Castro::apply_source_to_state() 20 4.413e-05 5.166e-05 6.913e-05 0.00% Castro::do_new_sources() 10 5.362e-05 5.992e-05 6.691e-05 0.00% Amr::defBaseLevel() 1 4.434e-05 5.45e-05 6.025e-05 0.00% Castro::advance() 10 3.967e-05 4.729e-05 5.4e-05 0.00% Castro::construct_old_gravity() 10 3.666e-05 4.211e-05 5.015e-05 0.00% Castro::construct_new_gravity() 10 2.848e-05 3.5e-05 3.94e-05 0.00% Castro::check_for_nan() 20 2.608e-05 3.04e-05 3.518e-05 0.00% Castro::expand_state() 10 2.34e-05 2.747e-05 3.365e-05 0.00% Castro::post_timestep() 10 1.617e-05 1.919e-05 2.267e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.752e-06 1.302e-05 2.093e-05 0.00% Castro::post_init() 1 7.735e-06 9.282e-06 1.175e-05 0.00% Castro::computeNewDt() 9 8.16e-06 9.278e-06 9.989e-06 0.00% Amr::InitializeInit() 1 3.016e-06 3.608e-06 5.774e-06 0.00% Castro::computeInitialDt() 2 3.634e-06 4.515e-06 5.327e-06 0.00% Amr::init() 1 1.941e-06 2.331e-06 3.06e-06 0.00% Amr::initialInit() 1 1.299e-06 1.707e-06 1.95e-06 0.00% Other 260 0.01607 0.01898 0.02269 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.475 3.475 3.476 100.00% Amr::coarseTimeStep() 10 3.27 3.27 3.27 94.09% Amr::timeStep() 10 3.255 3.256 3.257 93.71% Castro::advance() 10 3.239 3.239 3.24 93.23% Castro::subcycle_advance_ctu() 10 3.16 3.167 3.172 91.26% Castro::do_advance_ctu() 10 3.16 3.167 3.172 91.26% Castro::construct_ctu_hydro_source() 10 2.386 2.391 2.394 68.88% Gravity::make_radial_gravity() 21 0.3125 0.3272 0.3454 9.94% AmrLevel::FillPatch() 41 0.1986 0.2151 0.2223 6.39% Castro::construct_old_gravity() 10 0.1936 0.2051 0.2209 6.36% Gravity::get_old_grav_vector() 10 0.1925 0.2042 0.2198 6.32% Gravity::get_new_grav_vector() 11 0.2088 0.2095 0.2104 6.05% FillPatchIterator::Initialize 41 0.1676 0.1815 0.1954 5.62% Amr::init() 1 0.1922 0.1923 0.1924 5.54% Castro::initialize_do_advance() 10 0.1663 0.1766 0.1886 5.43% Castro::construct_new_gravity() 10 0.185 0.1857 0.1872 5.39% Amr::initialInit() 1 0.1763 0.1767 0.1769 5.09% FillPatchIterator::FillFromLevel0() 41 0.1308 0.1377 0.1609 4.63% FillPatchSingleLevel 41 0.1307 0.1376 0.1608 4.63% Amr::InitializeInit() 1 0.06853 0.1153 0.149 4.29% Amr::defBaseLevel() 1 0.06853 0.1152 0.149 4.29% Castro::initData() 1 0.05217 0.09699 0.1311 3.77% FabArray::ParallelCopy() 41 0.0961 0.1036 0.1291 3.71% Castro::expand_state() 10 0.1128 0.1205 0.1285 3.70% check_for_negative_density() 10 0.03329 0.06087 0.1262 3.63% Castro::clean_state() 62 0.1153 0.119 0.1232 3.54% Castro::estTimeStep() 21 0.04019 0.07215 0.1167 3.36% Amr::FinalizeInit() 1 0.02776 0.06143 0.1083 3.12% Castro::do_old_sources() 10 0.09137 0.1002 0.1035 2.98% FabArray::ParallelCopy_finish() 41 0.05388 0.06249 0.09445 2.72% amrex::Copy() 193 0.0656 0.08104 0.09393 2.70% Castro::computeInitialDt() 2 0.002357 0.03611 0.0829 2.38% Castro::initialize_advance() 10 0.06315 0.06905 0.07584 2.18% Castro::computeTemp() 63 0.06859 0.07034 0.07461 2.15% FabArray::setVal() 143 0.06246 0.06623 0.07107 2.04% Castro::do_new_sources() 10 0.06122 0.06414 0.06921 1.99% Castro::reset_internal_energy(MultiFab) 63 0.0473 0.049 0.05316 1.53% Castro::reset_internal_energy(Fab) 1008 0.04699 0.04869 0.05282 1.52% Castro::normalize_species() 62 0.04122 0.04329 0.04752 1.37% FabArray::ParallelCopy_nowait() 41 0.03457 0.04103 0.04253 1.22% StateDataPhysBCFunct::() 41 0.0316 0.03392 0.03641 1.05% StateData::FillBoundary(geom) 41 0.03148 0.0338 0.03629 1.04% Castro::construct_new_source() 50 0.02855 0.03021 0.0329 0.95% Castro::finalize_do_advance() 10 0.0219 0.02727 0.0305 0.88% Gravity::interpolate_monopole_grav() 21 0.02741 0.02936 0.03024 0.87% Castro::construct_new_gravity_source() 10 0.02273 0.02401 0.02679 0.77% Castro::post_init() 1 0.02454 0.02486 0.02508 0.72% Amr::writePlotFile() 2 0.02361 0.02376 0.02421 0.70% Castro::apply_source_to_state() 20 0.01128 0.01336 0.02066 0.59% FabArray::Saxpy() 20 0.01123 0.01331 0.02059 0.59% Castro::post_timestep() 10 0.01547 0.01605 0.01645 0.47% Castro::Castro() 1 0.01006 0.01165 0.01501 0.43% FabArray::setDomainBndry() 41 0.006664 0.01075 0.01346 0.39% Castro::check_for_nan() 20 0.009928 0.01129 0.01332 0.38% MultiFab::contains_nan() 20 0.009902 0.01126 0.01329 0.38% VisMF::Write(FabArray) 2 0.00844 0.01016 0.0129 0.37% Castro::initMFs() 1 0.006633 0.007998 0.01084 0.31% Castro::computeNewDt() 9 0.009903 0.009914 0.009922 0.29% Castro::construct_old_source() 50 0.006633 0.008889 0.009631 0.28% Castro::construct_old_gravity_source() 10 0.006576 0.008813 0.009557 0.27% AmrLevel::AmrLevel(dm) 1 0.005409 0.00635 0.008194 0.24% Other 260 0.02071 0.02435 0.03011 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 45 B 61 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8668 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6739 KiB 6743 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4543 KiB 4551 KiB 4560 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 234 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2792 KiB 2795 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 240 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 45 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 75 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-6-gde4dc974dda7) finalized