Initializing AMReX (24.09-12-g41353f6ab5cb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-12-g41353f6ab5cb) initialized Starting run at 05:38:51 UTC on 2024-09-05. Successfully read inputs file ... Castro git describe: 24.09-2-g97555d411 AMReX git describe: 24.09-12-g41353f6ab Microphysics git describe: 24.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014608533 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.361592982 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.351969644 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346162156 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.348538569 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372126662 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306161038 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307194188 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308130794 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.327205848 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306346066 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008002221 seconds Ending run at 05:38:55 UTC on 2024-09-05. Run time = 3.554528356 Run time without initialization = 3.348272294 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5539 ... 3.5543 ... 3.5546 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2645 2.2999 2.3789 66.92% Gravity::make_radial_gravity() 21 0.2965 0.3176 0.3336 9.38% check_for_negative_density() 10 0.05139 0.1336 0.1711 4.81% Castro::initData() 1 0.04718 0.08787 0.1422 4.00% Castro::estTimeStep() 21 0.04186 0.0948 0.1369 3.85% amrex::Copy() 193 0.06316 0.07881 0.09266 2.61% FabArray::ParallelCopy_finish() 41 0.04323 0.05983 0.08575 2.41% FabArray::setVal() 143 0.06127 0.06737 0.07776 2.19% Castro::reset_internal_energy(Fab) 1008 0.04622 0.04848 0.05035 1.42% Castro::normalize_species() 62 0.04119 0.04285 0.04546 1.28% FabArray::ParallelCopy_nowait() 41 0.03455 0.03979 0.0413 1.16% StateData::FillBoundary(geom) 41 0.03118 0.03336 0.03621 1.02% FillPatchIterator::Initialize 41 0.02911 0.03259 0.03458 0.97% Castro::construct_new_gravity_source() 10 0.02267 0.02522 0.03294 0.93% Gravity::interpolate_monopole_grav() 21 0.0284 0.02919 0.03038 0.85% Castro::computeTemp() 63 0.02036 0.02106 0.02212 0.62% Castro::initialize_do_advance() 10 0.01376 0.01753 0.02056 0.58% FabArray::Saxpy() 20 0.01034 0.01318 0.018 0.51% MultiFab::contains_nan() 20 0.009348 0.01056 0.01373 0.39% Castro::initialize_advance() 10 0.00548 0.009916 0.01268 0.36% Amr::writePlotFile() 2 0.007904 0.01054 0.01252 0.35% VisMF::Write(FabArray) 2 0.009048 0.009824 0.0122 0.34% FabArray::setDomainBndry() 41 0.007188 0.009857 0.01212 0.34% Castro::construct_new_source() 50 0.005834 0.006513 0.009777 0.28% Castro::construct_old_gravity_source() 10 0.006366 0.00865 0.009401 0.26% Amr::coarseTimeStep() 10 0.002067 0.006838 0.009268 0.26% Castro::initMFs() 1 0.006522 0.007059 0.008625 0.24% main() 1 0.003604 0.004066 0.004311 0.12% Gravity::get_new_grav_vector() 11 0.002837 0.003459 0.003833 0.11% Gravity::get_old_grav_vector() 10 0.00158 0.001915 0.002261 0.06% AmrLevel::FillPatch() 41 0.00077 0.001083 0.001221 0.03% Castro::finalize_do_advance() 10 0.0005429 0.001054 0.001206 0.03% Amr::timeStep() 10 0.0001815 0.0002288 0.000434 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002739 0.0002929 0.0003132 0.01% Castro::clean_state() 62 0.0001332 0.0001587 0.0001892 0.01% StateDataPhysBCFunct::() 41 0.0001019 0.0001227 0.0001888 0.01% Castro::do_advance_ctu() 10 0.0001362 0.00015 0.0001653 0.00% FillPatchIterator::FillFromLevel0() 41 9.991e-05 0.0001158 0.0001425 0.00% Castro::Castro() 1 5.829e-05 7.983e-05 0.0001095 0.00% FabArray::ParallelCopy() 41 8.731e-05 9.398e-05 9.945e-05 0.00% Castro::do_old_sources() 10 7.496e-05 8.576e-05 9.67e-05 0.00% Castro::apply_source_to_state() 20 3.724e-05 5.534e-05 9.062e-05 0.00% FillPatchSingleLevel 41 7.163e-05 7.925e-05 8.877e-05 0.00% Castro::construct_old_source() 50 6.945e-05 7.639e-05 8.759e-05 0.00% Amr::FinalizeInit() 1 3.619e-06 1.345e-05 7.343e-05 0.00% Castro::do_new_sources() 10 5.354e-05 5.942e-05 7.056e-05 0.00% Castro::subcycle_advance_ctu() 10 4.591e-05 5.17e-05 6.125e-05 0.00% Castro::construct_old_gravity() 10 2.954e-05 4.105e-05 6.111e-05 0.00% Amr::defBaseLevel() 1 4.654e-05 5.31e-05 6.034e-05 0.00% Castro::advance() 10 4.056e-05 4.673e-05 5.198e-05 0.00% Castro::construct_new_gravity() 10 2.896e-05 3.538e-05 4.223e-05 0.00% Castro::check_for_nan() 20 2.311e-05 2.738e-05 3.51e-05 0.00% Castro::expand_state() 10 2.15e-05 2.42e-05 2.841e-05 0.00% Castro::post_timestep() 10 1.519e-05 2.056e-05 2.489e-05 0.00% Castro::post_init() 1 8.341e-06 1.058e-05 1.528e-05 0.00% Castro::computeNewDt() 9 7.485e-06 8.537e-06 9.426e-06 0.00% Amr::init() 1 1.553e-06 2.887e-06 8.844e-06 0.00% Amr::InitializeInit() 1 2.664e-06 3.405e-06 5.498e-06 0.00% Castro::computeInitialDt() 2 3.504e-06 3.737e-06 4.044e-06 0.00% Amr::initialInit() 1 1.313e-06 1.808e-06 2.94e-06 0.00% Other 261 0.01584 0.01794 0.01985 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.554 3.554 3.555 100.00% Amr::coarseTimeStep() 10 3.336 3.336 3.336 93.85% Amr::timeStep() 10 3.316 3.318 3.323 93.49% Castro::advance() 10 3.3 3.301 3.303 92.92% Castro::subcycle_advance_ctu() 10 3.219 3.229 3.235 91.01% Castro::do_advance_ctu() 10 3.219 3.229 3.235 91.01% Castro::construct_ctu_hydro_source() 10 2.451 2.454 2.456 69.11% Gravity::make_radial_gravity() 21 0.3122 0.334 0.3463 9.74% AmrLevel::FillPatch() 41 0.1824 0.2084 0.2221 6.25% Gravity::get_new_grav_vector() 11 0.213 0.2149 0.2166 6.09% Castro::construct_old_gravity() 10 0.1844 0.2033 0.2151 6.05% Gravity::get_old_grav_vector() 10 0.1833 0.2024 0.214 6.02% Amr::init() 1 0.2058 0.2059 0.2059 5.79% Castro::initialize_do_advance() 10 0.1625 0.1758 0.1963 5.52% Castro::construct_new_gravity() 10 0.1902 0.1917 0.193 5.43% Amr::initialInit() 1 0.1905 0.191 0.1911 5.38% FillPatchIterator::Initialize 41 0.1539 0.1759 0.1895 5.33% check_for_negative_density() 10 0.05139 0.1336 0.1711 4.81% Amr::InitializeInit() 1 0.0671 0.1087 0.1643 4.62% Amr::defBaseLevel() 1 0.0671 0.1087 0.1643 4.62% FillPatchIterator::FillFromLevel0() 41 0.1147 0.1335 0.1532 4.31% FillPatchSingleLevel 41 0.1146 0.1334 0.1531 4.31% Castro::initData() 1 0.051 0.09173 0.146 4.11% Castro::expand_state() 10 0.104 0.1214 0.1406 3.96% Castro::estTimeStep() 21 0.04186 0.0948 0.1369 3.85% Amr::FinalizeInit() 1 0.02621 0.08233 0.124 3.49% Castro::clean_state() 62 0.1131 0.118 0.1226 3.45% FabArray::ParallelCopy() 41 0.08319 0.09981 0.1205 3.39% Castro::computeInitialDt() 2 0.002181 0.05784 0.09945 2.80% Castro::do_old_sources() 10 0.0903 0.09384 0.09612 2.70% amrex::Copy() 193 0.06316 0.07881 0.09266 2.61% FabArray::ParallelCopy_finish() 41 0.04323 0.05983 0.08575 2.41% Castro::do_new_sources() 10 0.05859 0.0664 0.08056 2.27% Castro::initialize_advance() 10 0.06168 0.06847 0.07807 2.20% FabArray::setVal() 143 0.06127 0.06737 0.07776 2.19% Castro::computeTemp() 63 0.06685 0.06983 0.07207 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04649 0.04877 0.05067 1.43% Castro::reset_internal_energy(Fab) 1008 0.04622 0.04848 0.05035 1.42% Castro::normalize_species() 62 0.04119 0.04285 0.04546 1.28% Castro::construct_new_source() 50 0.0285 0.03174 0.04271 1.20% FabArray::ParallelCopy_nowait() 41 0.03467 0.03989 0.04138 1.16% StateDataPhysBCFunct::() 41 0.0313 0.03348 0.0364 1.02% StateData::FillBoundary(geom) 41 0.03118 0.03336 0.03621 1.02% Castro::finalize_do_advance() 10 0.01346 0.02839 0.0351 0.99% Castro::construct_new_gravity_source() 10 0.02267 0.02522 0.03294 0.93% Gravity::interpolate_monopole_grav() 21 0.0284 0.02919 0.03038 0.85% Castro::post_init() 1 0.02373 0.02408 0.02423 0.68% Amr::writePlotFile() 2 0.02284 0.02298 0.02342 0.66% Castro::post_timestep() 10 0.01522 0.0169 0.02011 0.57% Castro::apply_source_to_state() 20 0.01037 0.01324 0.01809 0.51% FabArray::Saxpy() 20 0.01034 0.01318 0.018 0.51% Castro::check_for_nan() 20 0.009374 0.01059 0.01376 0.39% MultiFab::contains_nan() 20 0.009348 0.01056 0.01373 0.39% VisMF::Write(FabArray) 2 0.009048 0.009824 0.0122 0.34% FabArray::setDomainBndry() 41 0.007188 0.009857 0.01212 0.34% Castro::Castro() 1 0.01047 0.01096 0.0121 0.34% Castro::computeNewDt() 9 0.009622 0.009637 0.009648 0.27% Castro::construct_old_source() 50 0.006445 0.008727 0.009489 0.27% Castro::construct_old_gravity_source() 10 0.006366 0.00865 0.009401 0.26% Castro::initMFs() 1 0.006522 0.007059 0.008625 0.24% Other 261 0.02565 0.02941 0.03344 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6716 KiB 6723 KiB 6726 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4524 KiB 4538 KiB 4548 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 193 KiB 224 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2784 KiB 2785 KiB 2786 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 224 KiB 239 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 44 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-12-g41353f6ab5cb) finalized