Initializing AMReX (24.09-17-gb454719b10b8)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-17-gb454719b10b8) initialized Starting run at 05:39:28 UTC on 2024-09-06. Successfully read inputs file ... Castro git describe: 24.09-2-g97555d411 AMReX git describe: 24.09-17-gb454719b1 Microphysics git describe: 24.09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014642799 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340444395 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343039813 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.334277061 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322076227 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365452961 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308304533 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305402935 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305090753 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305150292 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306434236 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.07777497 seconds Ending run at 05:39:31 UTC on 2024-09-06. Run time = 3.540288129 Run time without initialization = 3.318519304 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5401 ... 3.5402 ... 3.5403 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2423 2.2906 2.3553 66.53% Gravity::make_radial_gravity() 21 0.2907 0.3014 0.3179 8.98% Castro::initData() 1 0.05038 0.09496 0.1518 4.29% Castro::estTimeStep() 21 0.03299 0.08813 0.1352 3.82% check_for_negative_density() 10 0.01039 0.07856 0.1255 3.54% FabArray::ParallelCopy_finish() 41 0.04591 0.06108 0.0924 2.61% amrex::Copy() 193 0.06509 0.07872 0.091 2.57% Amr::writePlotFile() 2 0.07766 0.08014 0.08222 2.32% FabArray::setVal() 143 0.05264 0.06583 0.0717 2.03% Castro::reset_internal_energy(Fab) 1008 0.04581 0.048 0.05469 1.54% FabArray::ParallelCopy_nowait() 41 0.03456 0.04221 0.04922 1.39% Castro::normalize_species() 62 0.0412 0.04248 0.04322 1.22% FillPatchIterator::Initialize 41 0.02785 0.03294 0.0383 1.08% StateData::FillBoundary(geom) 41 0.03143 0.03353 0.03584 1.01% Gravity::interpolate_monopole_grav() 21 0.02745 0.02915 0.02974 0.84% Castro::construct_new_gravity_source() 10 0.02238 0.02397 0.02531 0.71% Castro::computeTemp() 63 0.02058 0.02084 0.02133 0.60% Castro::initialize_do_advance() 10 0.01139 0.0154 0.01752 0.49% FabArray::setDomainBndry() 41 0.008652 0.01079 0.01534 0.43% Castro::initialize_advance() 10 0.005247 0.01067 0.01368 0.39% FabArray::Saxpy() 20 0.0105 0.01205 0.01323 0.37% VisMF::Write(FabArray) 2 0.008783 0.009706 0.01229 0.35% Castro::initMFs() 1 0.007801 0.008762 0.01127 0.32% MultiFab::contains_nan() 20 0.009593 0.01018 0.0109 0.31% Castro::construct_old_gravity_source() 10 0.006444 0.008706 0.009525 0.27% StateData::define() 4 0.006505 0.007345 0.009346 0.26% Castro::construct_new_source() 50 0.005653 0.00617 0.006505 0.18% main() 1 0.004007 0.004152 0.004271 0.12% Gravity::get_new_grav_vector() 11 0.002725 0.003419 0.003768 0.11% Amr::coarseTimeStep() 10 0.001158 0.001812 0.002406 0.07% Gravity::get_old_grav_vector() 10 0.001632 0.001952 0.002326 0.07% Castro::finalize_do_advance() 10 0.0004903 0.000981 0.001105 0.03% AmrLevel::FillPatch() 41 0.0008904 0.0009431 0.001091 0.03% Amr::timeStep() 10 0.0001585 0.0002294 0.0004999 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002727 0.0002925 0.000342 0.01% Castro::clean_state() 62 0.0001499 0.0001602 0.0001816 0.01% Castro::do_advance_ctu() 10 0.0001361 0.0001459 0.0001585 0.00% StateDataPhysBCFunct::() 41 0.000104 0.0001134 0.0001278 0.00% FillPatchIterator::FillFromLevel0() 41 9.435e-05 0.0001101 0.0001218 0.00% Castro::Castro() 1 6.348e-05 9.013e-05 0.0001131 0.00% Castro::do_old_sources() 10 6.915e-05 8.746e-05 0.000108 0.00% FabArray::ParallelCopy() 41 8.138e-05 9.121e-05 0.0001033 0.00% Amr::FinalizeInit() 1 3.165e-06 1.569e-05 9.688e-05 0.00% Castro::construct_old_source() 50 5.858e-05 6.993e-05 8.353e-05 0.00% FillPatchSingleLevel 41 6.906e-05 7.418e-05 8.289e-05 0.00% Amr::defBaseLevel() 1 5.697e-05 6.425e-05 7.244e-05 0.00% Castro::subcycle_advance_ctu() 10 4.163e-05 5.131e-05 7.244e-05 0.00% Castro::do_new_sources() 10 4.998e-05 5.916e-05 7.155e-05 0.00% Castro::apply_source_to_state() 20 3.509e-05 4.612e-05 6.752e-05 0.00% Castro::advance() 10 3.862e-05 4.48e-05 5.451e-05 0.00% Castro::construct_old_gravity() 10 3.152e-05 3.577e-05 4.16e-05 0.00% Castro::construct_new_gravity() 10 2.807e-05 3.323e-05 3.786e-05 0.00% Castro::check_for_nan() 20 2.567e-05 2.828e-05 3.512e-05 0.00% Castro::expand_state() 10 2.046e-05 2.529e-05 3.031e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.076e-05 1.466e-05 2.17e-05 0.00% Castro::post_timestep() 10 1.58e-05 1.735e-05 1.944e-05 0.00% Castro::post_init() 1 8.677e-06 9.543e-06 1.193e-05 0.00% Amr::InitializeInit() 1 2.783e-06 4.823e-06 8.98e-06 0.00% Castro::computeInitialDt() 2 2.845e-06 3.929e-06 4.401e-06 0.00% Amr::init() 1 2.132e-06 2.307e-06 2.549e-06 0.00% Amr::initialInit() 1 1.395e-06 1.796e-06 2.496e-06 0.00% Other 265 0.01077 0.0127 0.01417 0.40% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.54 3.54 3.54 100.00% Amr::coarseTimeStep() 10 3.237 3.237 3.237 91.42% Amr::timeStep() 10 3.224 3.224 3.225 91.09% Castro::advance() 10 3.208 3.208 3.208 90.63% Castro::subcycle_advance_ctu() 10 3.128 3.136 3.154 89.07% Castro::do_advance_ctu() 10 3.127 3.136 3.153 89.07% Castro::construct_ctu_hydro_source() 10 2.386 2.39 2.393 67.59% Gravity::make_radial_gravity() 21 0.3068 0.3171 0.3304 9.33% AmrLevel::FillPatch() 41 0.204 0.2141 0.2261 6.39% Amr::init() 1 0.2212 0.2213 0.2213 6.25% Castro::construct_old_gravity() 10 0.1845 0.1936 0.2117 5.98% Gravity::get_old_grav_vector() 10 0.1835 0.1927 0.2111 5.96% Gravity::get_new_grav_vector() 11 0.2072 0.2084 0.2094 5.92% Amr::initialInit() 1 0.2063 0.2067 0.2069 5.84% FillPatchIterator::Initialize 41 0.1688 0.181 0.1998 5.64% Castro::construct_new_gravity() 10 0.1851 0.1859 0.1868 5.28% Amr::InitializeInit() 1 0.07384 0.1195 0.1805 5.10% Amr::defBaseLevel() 1 0.07383 0.1195 0.1805 5.10% Castro::initialize_do_advance() 10 0.1627 0.1723 0.1796 5.07% FillPatchIterator::FillFromLevel0() 41 0.1251 0.1373 0.1633 4.61% FillPatchSingleLevel 41 0.1249 0.1372 0.1632 4.61% Castro::initData() 1 0.05403 0.09876 0.1556 4.39% Castro::estTimeStep() 21 0.03299 0.08813 0.1352 3.82% Amr::FinalizeInit() 1 0.02583 0.08718 0.1325 3.74% Castro::expand_state() 10 0.1091 0.1205 0.1304 3.68% FabArray::ParallelCopy() 41 0.08909 0.1035 0.1271 3.59% check_for_negative_density() 10 0.01039 0.07856 0.1255 3.54% Castro::clean_state() 62 0.1141 0.1169 0.1242 3.51% Castro::computeInitialDt() 2 0.002178 0.06318 0.1088 3.07% Castro::do_old_sources() 10 0.09098 0.09999 0.1045 2.95% Amr::writePlotFile() 2 0.09232 0.09245 0.0928 2.62% FabArray::ParallelCopy_finish() 41 0.04591 0.06108 0.0924 2.61% amrex::Copy() 193 0.06509 0.07872 0.091 2.57% Castro::initialize_advance() 10 0.05083 0.06833 0.07734 2.18% Castro::computeTemp() 63 0.0667 0.06913 0.07602 2.15% FabArray::setVal() 143 0.05264 0.06583 0.0717 2.03% Castro::do_new_sources() 10 0.05748 0.06258 0.06664 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04612 0.04829 0.05504 1.55% Castro::reset_internal_energy(Fab) 1008 0.04581 0.048 0.05469 1.54% FabArray::ParallelCopy_nowait() 41 0.03466 0.0423 0.04931 1.39% Castro::normalize_species() 62 0.0412 0.04248 0.04322 1.22% StateDataPhysBCFunct::() 41 0.03155 0.03365 0.03594 1.02% StateData::FillBoundary(geom) 41 0.03143 0.03353 0.03584 1.01% Castro::construct_new_source() 50 0.02804 0.03014 0.03177 0.90% Gravity::interpolate_monopole_grav() 21 0.02745 0.02915 0.02974 0.84% Castro::construct_new_gravity_source() 10 0.02238 0.02397 0.02531 0.71% Castro::post_init() 1 0.02317 0.02354 0.02365 0.67% Castro::finalize_do_advance() 10 0.012 0.01677 0.02213 0.63% Castro::post_timestep() 10 0.01555 0.01604 0.01649 0.47% Castro::Castro() 1 0.01182 0.01318 0.01575 0.44% FabArray::setDomainBndry() 41 0.008652 0.01079 0.01534 0.43% Castro::apply_source_to_state() 20 0.01055 0.0121 0.0133 0.38% FabArray::Saxpy() 20 0.0105 0.01205 0.01323 0.37% VisMF::Write(FabArray) 2 0.008783 0.009706 0.01229 0.35% Castro::initMFs() 1 0.007801 0.008762 0.01127 0.32% Castro::check_for_nan() 20 0.00962 0.0102 0.01092 0.31% MultiFab::contains_nan() 20 0.009593 0.01018 0.0109 0.31% Castro::construct_old_source() 50 0.006503 0.008776 0.009603 0.27% Castro::construct_old_gravity_source() 10 0.006444 0.008706 0.009525 0.27% AmrLevel::AmrLevel(dm) 1 0.006516 0.007359 0.009368 0.26% StateData::define() 4 0.006505 0.007345 0.009346 0.26% Other 265 0.02461 0.02698 0.02882 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 44 B 62 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8666 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6684 KiB 6690 KiB 6694 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4414 KiB 4426 KiB 4451 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 229 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2715 KiB 2718 KiB 2719 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 221 KiB 228 KiB 238 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 45 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 69 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-17-gb454719b10b8) finalized