Initializing AMReX (24.09-21-gc6b4fde07ae1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-21-gc6b4fde07ae1) initialized Starting run at 05:38:00 UTC on 2024-09-09. Successfully read inputs file ... Castro git describe: 24.09-2-g97555d411 AMReX git describe: 24.09-21-gc6b4fde07 Microphysics git describe: 24.09-2-g1e1dc144 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015754377 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360084541 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.352690786 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.330633928 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.351059653 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.366824359 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306468102 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304932051 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304916481 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305415888 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.304802885 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00778609 seconds Ending run at 05:38:03 UTC on 2024-09-09. Run time = 3.513202998 Run time without initialization = 3.30104509 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5123 ... 3.5127 ... 3.5133 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2644 2.3003 2.3467 66.79% Gravity::make_radial_gravity() 21 0.2952 0.3024 0.3112 8.86% Castro::initData() 1 0.04829 0.09167 0.143 4.07% Castro::estTimeStep() 21 0.04118 0.09308 0.1427 4.06% check_for_negative_density() 10 0.03634 0.08559 0.1227 3.49% amrex::Copy() 193 0.07713 0.08143 0.08985 2.56% FabArray::setVal() 143 0.06504 0.07213 0.08387 2.39% FabArray::ParallelCopy_finish() 41 0.04075 0.06077 0.08144 2.32% Castro::reset_internal_energy(Fab) 1008 0.04588 0.04751 0.04961 1.41% Castro::normalize_species() 62 0.04173 0.04319 0.04843 1.38% FabArray::ParallelCopy_nowait() 41 0.03907 0.04142 0.04291 1.22% FillPatchIterator::Initialize 41 0.0283 0.03497 0.03883 1.11% Castro::construct_new_gravity_source() 10 0.02394 0.0261 0.03638 1.04% StateData::FillBoundary(geom) 41 0.02999 0.03278 0.03479 0.99% Gravity::interpolate_monopole_grav() 21 0.02846 0.02928 0.03009 0.86% Castro::initialize_do_advance() 10 0.01175 0.01845 0.0225 0.64% Castro::computeTemp() 63 0.01981 0.02084 0.02167 0.62% MultiFab::contains_nan() 20 0.009946 0.01099 0.01414 0.40% FabArray::Saxpy() 20 0.01132 0.01272 0.01378 0.39% Castro::initialize_advance() 10 0.00978 0.01151 0.01358 0.39% VisMF::Write(FabArray) 2 0.009478 0.01007 0.01301 0.37% FabArray::setDomainBndry() 41 0.008004 0.01076 0.01279 0.36% Amr::writePlotFile() 2 0.007828 0.01094 0.01158 0.33% Castro::construct_old_gravity_source() 10 0.007596 0.009405 0.01007 0.29% Amr::coarseTimeStep() 10 0.001658 0.006511 0.009413 0.27% Castro::construct_new_source() 50 0.006061 0.006591 0.009051 0.26% Castro::initMFs() 1 0.006484 0.007201 0.007756 0.22% Castro::enforce_min_density() 62 0.007177 0.007388 0.007601 0.22% main() 1 0.00365 0.004045 0.004569 0.13% Gravity::get_new_grav_vector() 11 0.002921 0.003659 0.004089 0.12% Gravity::get_old_grav_vector() 10 0.001572 0.002004 0.002726 0.08% Castro::finalize_do_advance() 10 0.001147 0.001183 0.001257 0.04% AmrLevel::FillPatch() 41 0.0008637 0.0009373 0.001051 0.03% Amr::timeStep() 10 0.0001609 0.0002251 0.0004368 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002978 0.0003124 0.0003296 0.01% StateDataPhysBCFunct::() 41 0.0001089 0.0001263 0.0001897 0.01% Castro::clean_state() 62 0.0001354 0.0001518 0.0001824 0.01% Castro::do_advance_ctu() 10 0.0001227 0.000143 0.0001602 0.00% FillPatchIterator::FillFromLevel0() 41 9.662e-05 0.0001074 0.0001244 0.00% FabArray::ParallelCopy() 41 8.284e-05 9.319e-05 0.0001062 0.00% Castro::do_old_sources() 10 7.104e-05 8.862e-05 0.0001031 0.00% Castro::Castro() 1 5.882e-05 7.368e-05 9.153e-05 0.00% Amr::FinalizeInit() 1 3.635e-06 1.616e-05 9.071e-05 0.00% Castro::construct_old_source() 50 5.431e-05 7.125e-05 8.168e-05 0.00% FillPatchSingleLevel 41 6.845e-05 7.511e-05 7.946e-05 0.00% Castro::do_new_sources() 10 5.223e-05 5.973e-05 7.399e-05 0.00% Castro::subcycle_advance_ctu() 10 4.462e-05 5.737e-05 7.164e-05 0.00% Castro::apply_source_to_state() 20 3.553e-05 4.814e-05 6.669e-05 0.00% Amr::defBaseLevel() 1 4.506e-05 4.847e-05 5.833e-05 0.00% Castro::advance() 10 4.274e-05 4.699e-05 5.448e-05 0.00% Castro::construct_old_gravity() 10 3.361e-05 3.833e-05 4.597e-05 0.00% Castro::construct_new_gravity() 10 2.876e-05 3.489e-05 4.193e-05 0.00% Castro::post_timestep() 10 1.548e-05 2.272e-05 3.642e-05 0.00% Castro::expand_state() 10 2.091e-05 2.523e-05 2.977e-05 0.00% Castro::check_for_nan() 20 2.386e-05 2.575e-05 2.797e-05 0.00% Castro::post_init() 1 8.25e-06 9.575e-06 1.262e-05 0.00% Castro::computeNewDt() 9 8.165e-06 9.609e-06 1.033e-05 0.00% Amr::InitializeInit() 1 2.837e-06 4.027e-06 7.442e-06 0.00% Castro::computeInitialDt() 2 3.112e-06 3.741e-06 4.194e-06 0.00% Amr::init() 1 1.74e-06 2.071e-06 2.412e-06 0.00% Amr::initialInit() 1 1.461e-06 1.837e-06 2.247e-06 0.00% Other 199 0.01076 0.01292 0.01428 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.512 3.513 3.513 100.00% Amr::coarseTimeStep() 10 3.289 3.289 3.289 93.61% Amr::timeStep() 10 3.269 3.272 3.277 93.27% Castro::advance() 10 3.253 3.254 3.255 92.66% Castro::subcycle_advance_ctu() 10 3.169 3.176 3.181 90.55% Castro::do_advance_ctu() 10 3.169 3.176 3.181 90.55% Castro::construct_ctu_hydro_source() 10 2.404 2.407 2.409 68.58% Gravity::make_radial_gravity() 21 0.3115 0.3192 0.327 9.31% AmrLevel::FillPatch() 41 0.1934 0.214 0.2284 6.50% Gravity::get_new_grav_vector() 11 0.2129 0.2139 0.2152 6.12% Amr::init() 1 0.2116 0.2118 0.2118 6.03% Castro::construct_old_gravity() 10 0.1874 0.1916 0.1988 5.66% Gravity::get_old_grav_vector() 10 0.1861 0.1906 0.1976 5.63% Amr::initialInit() 1 0.1956 0.1958 0.196 5.58% FillPatchIterator::Initialize 41 0.1642 0.1812 0.1936 5.51% Castro::construct_new_gravity() 10 0.1872 0.188 0.1889 5.38% Castro::initialize_do_advance() 10 0.1668 0.1808 0.1879 5.35% Amr::InitializeInit() 1 0.06761 0.1132 0.1658 4.72% Amr::defBaseLevel() 1 0.0676 0.1132 0.1658 4.72% FillPatchIterator::FillFromLevel0() 41 0.1178 0.1355 0.1527 4.35% FillPatchSingleLevel 41 0.1177 0.1354 0.1526 4.34% Castro::initData() 1 0.05213 0.09565 0.1472 4.19% Castro::estTimeStep() 21 0.04118 0.09308 0.1427 4.06% Castro::expand_state() 10 0.1106 0.1252 0.134 3.81% Amr::FinalizeInit() 1 0.03015 0.08252 0.1281 3.65% check_for_negative_density() 10 0.03634 0.08559 0.1227 3.49% Castro::clean_state() 62 0.1141 0.1184 0.122 3.47% FabArray::ParallelCopy() 41 0.08275 0.1024 0.1207 3.44% Castro::computeInitialDt() 2 0.002615 0.05519 0.1008 2.87% Castro::do_old_sources() 10 0.09332 0.09675 0.09963 2.84% amrex::Copy() 193 0.07713 0.08143 0.08985 2.56% FabArray::setVal() 143 0.06504 0.07213 0.08387 2.39% Castro::do_new_sources() 10 0.06164 0.06651 0.08323 2.37% FabArray::ParallelCopy_finish() 41 0.04075 0.06077 0.08144 2.32% Castro::initialize_advance() 10 0.06894 0.07354 0.08094 2.30% Castro::computeTemp() 63 0.066 0.06866 0.07159 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04619 0.04782 0.04993 1.42% Castro::reset_internal_energy(Fab) 1008 0.04588 0.04751 0.04961 1.41% Castro::normalize_species() 62 0.04173 0.04319 0.04843 1.38% Castro::construct_new_source() 50 0.03 0.03269 0.04543 1.29% FabArray::ParallelCopy_nowait() 41 0.03918 0.04151 0.043 1.22% Castro::construct_new_gravity_source() 10 0.02394 0.0261 0.03638 1.04% Castro::finalize_do_advance() 10 0.01326 0.02994 0.0358 1.02% StateDataPhysBCFunct::() 41 0.03011 0.03291 0.0349 0.99% StateData::FillBoundary(geom) 41 0.02999 0.03278 0.03479 0.99% Gravity::interpolate_monopole_grav() 21 0.02846 0.02928 0.03009 0.86% Castro::post_init() 1 0.0268 0.02689 0.02711 0.77% Amr::writePlotFile() 2 0.02368 0.02389 0.02408 0.69% Castro::post_timestep() 10 0.01574 0.01773 0.0234 0.67% Castro::check_for_nan() 20 0.009971 0.01102 0.01417 0.40% MultiFab::contains_nan() 20 0.009946 0.01099 0.01414 0.40% Castro::apply_source_to_state() 20 0.01137 0.01276 0.01385 0.39% FabArray::Saxpy() 20 0.01132 0.01272 0.01378 0.39% VisMF::Write(FabArray) 2 0.009478 0.01007 0.01301 0.37% FabArray::setDomainBndry() 41 0.008004 0.01076 0.01279 0.36% Castro::Castro() 1 0.009492 0.01119 0.01225 0.35% Castro::construct_old_source() 50 0.00765 0.009477 0.01014 0.29% Castro::construct_old_gravity_source() 10 0.007596 0.009405 0.01007 0.29% Castro::computeNewDt() 9 0.009132 0.009149 0.009163 0.26% Castro::initMFs() 1 0.006484 0.007201 0.007756 0.22% Castro::enforce_min_density() 62 0.007177 0.007388 0.007601 0.22% Other 199 0.02136 0.02485 0.02811 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6698 KiB 6704 KiB 6705 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4505 KiB 4517 KiB 4525 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 234 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2775 KiB 2778 KiB 2780 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 231 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 46 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-21-gc6b4fde07ae1) finalized