Initializing AMReX (24.09-22-gf547cb564b3c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-22-gf547cb564b3c) initialized Starting run at 05:28:07 UTC on 2024-09-10. Successfully read inputs file ... Castro git describe: 24.09-3-g00707660a AMReX git describe: 24.09-22-gf547cb564 Microphysics git describe: 24.09-2-g1e1dc144 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.031941765 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348121903 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.353734828 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323309602 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322965736 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.382058403 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.341874675 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.317039537 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.326227252 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.315985009 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.316623624 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009044153 seconds Ending run at 05:28:10 UTC on 2024-09-10. Run time = 3.564176553 Run time without initialization = 3.362323147 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5627 ... 3.5634 ... 3.5643 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2472 2.3077 2.3643 66.33% Gravity::make_radial_gravity() 21 0.3006 0.3097 0.3236 9.08% check_for_negative_density() 10 0.1052 0.163 0.2236 6.27% Castro::initData() 1 0.04784 0.08633 0.1222 3.43% Castro::estTimeStep() 21 0.0294 0.06841 0.111 3.11% FabArray::ParallelCopy_finish() 41 0.03754 0.06211 0.1037 2.91% amrex::Copy() 193 0.06364 0.07752 0.09089 2.55% FabArray::setVal() 143 0.05304 0.0661 0.07204 2.02% Castro::reset_internal_energy(Fab) 1008 0.04529 0.04706 0.04903 1.38% Castro::normalize_species() 62 0.04111 0.04243 0.04607 1.29% FabArray::ParallelCopy_nowait() 41 0.03622 0.04007 0.04249 1.19% StateData::FillBoundary(geom) 41 0.03043 0.03263 0.03528 0.99% FillPatchIterator::Initialize 41 0.02755 0.0318 0.03517 0.99% Gravity::interpolate_monopole_grav() 21 0.02744 0.02969 0.03213 0.90% Amr::writePlotFile() 2 0.02541 0.02836 0.0291 0.82% Castro::construct_new_gravity_source() 10 0.02319 0.02481 0.0262 0.74% Castro::computeTemp() 63 0.02068 0.02108 0.02166 0.61% Castro::initialize_do_advance() 10 0.01175 0.01548 0.01695 0.48% Castro::initialize_advance() 10 0.005591 0.01084 0.01375 0.39% VisMF::Write(FabArray) 2 0.00914 0.009915 0.01359 0.38% FabArray::Saxpy() 20 0.009885 0.01172 0.01254 0.35% MultiFab::contains_nan() 20 0.009592 0.01105 0.01219 0.34% FabArray::setDomainBndry() 41 0.007331 0.009303 0.01057 0.30% Castro::construct_old_gravity_source() 10 0.006478 0.008631 0.009243 0.26% Castro::enforce_min_density() 62 0.00704 0.007308 0.007707 0.22% Castro::construct_new_source() 50 0.005647 0.00616 0.006522 0.18% main() 1 0.003314 0.004038 0.004935 0.14% Gravity::get_new_grav_vector() 11 0.002951 0.003443 0.003986 0.11% Gravity::get_old_grav_vector() 10 0.00165 0.001979 0.00255 0.07% Amr::coarseTimeStep() 10 0.001097 0.001731 0.002297 0.06% Castro::finalize_do_advance() 10 0.0004952 0.001019 0.001351 0.04% AmrLevel::FillPatch() 41 0.0007632 0.000971 0.001114 0.03% Amr::timeStep() 10 0.0001778 0.0002246 0.0004141 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002965 0.0003067 0.0003276 0.01% Castro::clean_state() 62 0.0001456 0.0001548 0.0001757 0.00% Castro::do_advance_ctu() 10 0.0001371 0.000154 0.0001677 0.00% StateDataPhysBCFunct::() 41 0.000105 0.0001128 0.00012 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001002 0.0001069 0.0001149 0.00% Castro::do_old_sources() 10 7.423e-05 8.991e-05 0.0001089 0.00% FabArray::ParallelCopy() 41 8.346e-05 8.892e-05 9.773e-05 0.00% Castro::Castro() 1 5.818e-05 7.362e-05 9.411e-05 0.00% Castro::construct_old_source() 50 5.928e-05 6.726e-05 8.11e-05 0.00% FillPatchSingleLevel 41 6.984e-05 7.492e-05 7.849e-05 0.00% Amr::FinalizeInit() 1 3.35e-06 1.24e-05 6.896e-05 0.00% Amr::defBaseLevel() 1 4.965e-05 6.08e-05 6.664e-05 0.00% Castro::advance() 10 4.323e-05 4.754e-05 6.262e-05 0.00% Castro::do_new_sources() 10 5.442e-05 5.853e-05 6.144e-05 0.00% Castro::subcycle_advance_ctu() 10 4.317e-05 5.197e-05 5.915e-05 0.00% Castro::apply_source_to_state() 20 4.139e-05 4.546e-05 5.396e-05 0.00% Castro::construct_old_gravity() 10 3.47e-05 3.859e-05 4.597e-05 0.00% Castro::construct_new_gravity() 10 3.084e-05 3.378e-05 3.789e-05 0.00% Castro::check_for_nan() 20 2.573e-05 2.833e-05 3.599e-05 0.00% Castro::expand_state() 10 2.118e-05 2.396e-05 2.647e-05 0.00% Castro::post_timestep() 10 1.549e-05 1.728e-05 1.951e-05 0.00% Castro::computeNewDt() 9 8.015e-06 9.591e-06 1.273e-05 0.00% Amr::init() 1 1.786e-06 3.306e-06 1.18e-05 0.00% Castro::post_init() 1 7.871e-06 9.113e-06 1.067e-05 0.00% Amr::InitializeInit() 1 2.651e-06 3.732e-06 6.651e-06 0.00% Castro::computeInitialDt() 2 3.123e-06 3.785e-06 4.44e-06 0.00% Amr::initialInit() 1 1.327e-06 1.704e-06 2.185e-06 0.00% Other 200 0.01562 0.01915 0.02096 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.563 3.563 3.564 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 93.95% Amr::timeStep() 10 3.335 3.336 3.337 93.61% Castro::advance() 10 3.319 3.32 3.32 93.14% Castro::subcycle_advance_ctu() 10 3.243 3.248 3.264 91.58% Castro::do_advance_ctu() 10 3.243 3.248 3.264 91.58% Castro::construct_ctu_hydro_source() 10 2.49 2.492 2.493 69.95% Gravity::make_radial_gravity() 21 0.3172 0.3245 0.3362 9.43% AmrLevel::FillPatch() 41 0.1905 0.2066 0.2309 6.48% check_for_negative_density() 10 0.1052 0.163 0.2236 6.27% Castro::construct_old_gravity() 10 0.1985 0.204 0.2136 5.99% Gravity::get_old_grav_vector() 10 0.1978 0.2033 0.2129 5.97% Gravity::get_new_grav_vector() 11 0.2087 0.2096 0.2108 5.92% FillPatchIterator::Initialize 41 0.16 0.1764 0.2057 5.77% Amr::init() 1 0.2012 0.2015 0.2015 5.65% Castro::construct_new_gravity() 10 0.186 0.1871 0.1876 5.26% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1353 0.1708 4.79% FillPatchSingleLevel 41 0.1147 0.1352 0.1707 4.79% Amr::initialInit() 1 0.1691 0.1696 0.1699 4.77% Castro::initialize_do_advance() 10 0.1561 0.1611 0.1679 4.71% Amr::InitializeInit() 1 0.0689 0.1071 0.143 4.01% Amr::defBaseLevel() 1 0.0689 0.1071 0.143 4.01% FabArray::ParallelCopy() 41 0.07929 0.1024 0.1401 3.93% Castro::initData() 1 0.05139 0.09012 0.1262 3.54% Castro::clean_state() 62 0.1142 0.1175 0.1202 3.37% Castro::expand_state() 10 0.1027 0.1082 0.1194 3.35% Castro::estTimeStep() 21 0.0294 0.06841 0.111 3.11% Castro::do_old_sources() 10 0.09273 0.1006 0.104 2.92% FabArray::ParallelCopy_finish() 41 0.03754 0.06211 0.1037 2.91% Amr::FinalizeInit() 1 0.02687 0.0625 0.1007 2.83% amrex::Copy() 193 0.06364 0.07752 0.09089 2.55% Castro::computeInitialDt() 2 0.002505 0.03832 0.07658 2.15% Castro::initialize_advance() 10 0.05144 0.0683 0.07331 2.06% FabArray::setVal() 143 0.05304 0.0661 0.07204 2.02% Castro::computeTemp() 63 0.0663 0.06845 0.07075 1.98% Castro::do_new_sources() 10 0.05961 0.06348 0.06886 1.93% Castro::reset_internal_energy(MultiFab) 63 0.0456 0.04737 0.04934 1.38% Castro::reset_internal_energy(Fab) 1008 0.04529 0.04706 0.04903 1.38% Castro::normalize_species() 62 0.04111 0.04243 0.04607 1.29% FabArray::ParallelCopy_nowait() 41 0.03632 0.04016 0.04259 1.19% Amr::writePlotFile() 2 0.04079 0.04097 0.04122 1.16% StateDataPhysBCFunct::() 41 0.03054 0.03274 0.03539 0.99% StateData::FillBoundary(geom) 41 0.03043 0.03263 0.03528 0.99% Castro::construct_new_source() 50 0.02921 0.03097 0.03246 0.91% Gravity::interpolate_monopole_grav() 21 0.02744 0.02969 0.03213 0.90% Castro::construct_new_gravity_source() 10 0.02319 0.02481 0.0262 0.74% Castro::finalize_do_advance() 10 0.01637 0.02167 0.02609 0.73% Castro::post_init() 1 0.02382 0.02397 0.02415 0.68% Castro::post_timestep() 10 0.01569 0.01608 0.01654 0.46% VisMF::Write(FabArray) 2 0.00914 0.009915 0.01359 0.38% Castro::apply_source_to_state() 20 0.00993 0.01177 0.01259 0.35% FabArray::Saxpy() 20 0.009885 0.01172 0.01254 0.35% Castro::check_for_nan() 20 0.009619 0.01108 0.01223 0.34% MultiFab::contains_nan() 20 0.009592 0.01105 0.01219 0.34% Castro::Castro() 1 0.009817 0.01091 0.01177 0.33% FabArray::setDomainBndry() 41 0.007331 0.009303 0.01057 0.30% Castro::computeNewDt() 9 0.009424 0.009448 0.009466 0.27% Castro::construct_old_source() 50 0.006538 0.008698 0.009313 0.26% Castro::construct_old_gravity_source() 10 0.006478 0.008631 0.009243 0.26% Castro::enforce_min_density() 62 0.00704 0.007308 0.007707 0.22% Other 200 0.02545 0.03006 0.03244 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6728 KiB 6731 KiB 6732 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4553 KiB 4571 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 197 KiB 213 KiB 237 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2790 KiB 2793 KiB 2794 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 232 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-22-gf547cb564b3c) finalized