Initializing AMReX (24.09-25-g4460afbbce25)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-25-g4460afbbce25) initialized Starting run at 05:30:38 UTC on 2024-09-12. Successfully read inputs file ... Castro git describe: 24.09-7-g7059f8b36 AMReX git describe: 24.09-25-g4460afbbc Microphysics git describe: 24.09-2-g1e1dc144 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014949635 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.357735753 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.356675597 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.347940464 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.356255292 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.384436727 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313365346 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.309713415 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309517718 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308648021 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.31239669 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007766652 seconds Ending run at 05:30:42 UTC on 2024-09-12. Run time = 3.552931022 Run time without initialization = 3.369209269 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5521 ... 3.5526 ... 3.5530 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2990 2.3454 2.3912 67.30% Gravity::make_radial_gravity() 21 0.2975 0.3181 0.331 9.32% check_for_negative_density() 10 0.03403 0.08081 0.1287 3.62% Castro::initData() 1 0.04853 0.08703 0.1206 3.39% Castro::estTimeStep() 21 0.03511 0.06921 0.1077 3.03% amrex::Copy() 193 0.08217 0.08795 0.09985 2.81% FabArray::setVal() 143 0.06441 0.06993 0.07759 2.18% FabArray::ParallelCopy_finish() 41 0.04305 0.06267 0.07719 2.17% Castro::reset_internal_energy(Fab) 1008 0.04359 0.04707 0.05076 1.43% Castro::normalize_species() 62 0.04213 0.04407 0.04707 1.32% StateData::FillBoundary(geom) 41 0.03238 0.03625 0.0451 1.27% FabArray::ParallelCopy_nowait() 41 0.04278 0.04361 0.04449 1.25% FillPatchIterator::Initialize 41 0.03426 0.03643 0.03905 1.10% Gravity::interpolate_monopole_grav() 21 0.02784 0.02945 0.0307 0.86% Castro::construct_new_gravity_source() 10 0.0233 0.02448 0.02556 0.72% Castro::initialize_do_advance() 10 0.01538 0.01923 0.02399 0.68% Castro::computeTemp() 63 0.01938 0.02103 0.02241 0.63% MultiFab::contains_nan() 20 0.009944 0.0118 0.01505 0.42% FabArray::setDomainBndry() 41 0.01128 0.01224 0.014 0.39% FabArray::Saxpy() 20 0.01129 0.01244 0.01341 0.38% Castro::initialize_advance() 10 0.009875 0.01137 0.0132 0.37% VisMF::Write(FabArray) 2 0.009087 0.00969 0.01218 0.34% Amr::writePlotFile() 2 0.007806 0.009938 0.01041 0.29% Castro::construct_old_gravity_source() 10 0.008532 0.009552 0.01012 0.28% Castro::enforce_min_density() 62 0.007118 0.007588 0.007954 0.22% Amr::coarseTimeStep() 10 0.001165 0.00571 0.007537 0.21% Castro::construct_new_source() 50 0.005952 0.00628 0.007017 0.20% main() 1 0.003271 0.00373 0.004121 0.12% Gravity::get_new_grav_vector() 11 0.003192 0.003655 0.003964 0.11% Gravity::get_old_grav_vector() 10 0.00213 0.002587 0.003657 0.10% Castro::finalize_do_advance() 10 0.001009 0.001094 0.001166 0.03% AmrLevel::FillPatch() 41 0.0008526 0.0009541 0.001109 0.03% Amr::timeStep() 10 0.0001794 0.0002313 0.0004386 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002973 0.0003125 0.0003479 0.01% StateDataPhysBCFunct::() 41 0.0001126 0.000131 0.0001882 0.01% Castro::clean_state() 62 0.0001405 0.000164 0.0001876 0.01% Castro::do_advance_ctu() 10 0.0001524 0.0001603 0.0001845 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001055 0.0001234 0.0001375 0.00% FabArray::ParallelCopy() 41 9.438e-05 0.0001006 0.0001105 0.00% FillPatchSingleLevel 41 7.727e-05 8.903e-05 0.0001052 0.00% Castro::do_old_sources() 10 8.475e-05 9.165e-05 9.988e-05 0.00% Amr::FinalizeInit() 1 3.537e-06 1.69e-05 9.686e-05 0.00% Castro::construct_old_source() 50 6.554e-05 7.701e-05 8.263e-05 0.00% Castro::Castro() 1 4.921e-05 6.499e-05 8.108e-05 0.00% Amr::defBaseLevel() 1 5.347e-05 6.3e-05 7.437e-05 0.00% Castro::do_new_sources() 10 6.064e-05 6.532e-05 7.231e-05 0.00% Castro::subcycle_advance_ctu() 10 5.463e-05 6.131e-05 6.856e-05 0.00% Castro::advance() 10 4.301e-05 5.42e-05 6.804e-05 0.00% Castro::construct_new_gravity() 10 3.089e-05 4.209e-05 5.981e-05 0.00% Castro::construct_old_gravity() 10 3.536e-05 4.613e-05 5.841e-05 0.00% Castro::apply_source_to_state() 20 4.244e-05 4.625e-05 5.362e-05 0.00% Castro::check_for_nan() 20 2.44e-05 2.923e-05 4.275e-05 0.00% Castro::post_timestep() 10 1.724e-05 2.135e-05 3.178e-05 0.00% Castro::expand_state() 10 2.35e-05 2.644e-05 3.017e-05 0.00% Castro::post_init() 1 8.545e-06 1.022e-05 1.369e-05 0.00% Castro::computeNewDt() 9 8.788e-06 9.653e-06 1.045e-05 0.00% Amr::InitializeInit() 1 2.999e-06 3.961e-06 6.281e-06 0.00% Castro::computeInitialDt() 2 3.667e-06 4.105e-06 5.157e-06 0.00% Amr::init() 1 2.346e-06 2.766e-06 3.759e-06 0.00% Amr::initialInit() 1 1.571e-06 2.057e-06 2.522e-06 0.00% Other 200 0.01635 0.01917 0.02128 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.553 3.553 100.00% Amr::coarseTimeStep() 10 3.357 3.357 3.357 94.50% Amr::timeStep() 10 3.339 3.341 3.345 94.16% Castro::advance() 10 3.323 3.324 3.326 93.60% Castro::subcycle_advance_ctu() 10 3.243 3.249 3.252 91.52% Castro::do_advance_ctu() 10 3.243 3.248 3.252 91.52% Castro::construct_ctu_hydro_source() 10 2.445 2.447 2.449 68.94% Gravity::make_radial_gravity() 21 0.3151 0.336 0.3498 9.85% AmrLevel::FillPatch() 41 0.2042 0.2293 0.248 6.98% Castro::construct_old_gravity() 10 0.1932 0.2117 0.2224 6.26% Gravity::get_old_grav_vector() 10 0.192 0.2107 0.2217 6.24% Gravity::get_new_grav_vector() 11 0.2127 0.2156 0.2214 6.23% Castro::initialize_do_advance() 10 0.1782 0.1927 0.2157 6.07% FillPatchIterator::Initialize 41 0.1711 0.1918 0.2052 5.78% Castro::construct_new_gravity() 10 0.1902 0.1925 0.1986 5.59% Amr::init() 1 0.1832 0.1833 0.1834 5.16% Amr::initialInit() 1 0.1681 0.1686 0.1687 4.75% FillPatchIterator::FillFromLevel0() 41 0.1196 0.1431 0.1584 4.46% Castro::expand_state() 10 0.1172 0.1346 0.1584 4.46% FillPatchSingleLevel 41 0.1195 0.143 0.1583 4.46% Amr::InitializeInit() 1 0.06789 0.1075 0.1417 3.99% Amr::defBaseLevel() 1 0.06788 0.1075 0.1417 3.99% check_for_negative_density() 10 0.03403 0.08081 0.1287 3.62% Castro::clean_state() 62 0.113 0.1193 0.125 3.52% Castro::initData() 1 0.05248 0.09091 0.124 3.49% FabArray::ParallelCopy() 41 0.08602 0.1065 0.1207 3.40% Castro::estTimeStep() 21 0.03511 0.06921 0.1077 3.03% Castro::do_old_sources() 10 0.0968 0.09952 0.1039 2.92% Amr::FinalizeInit() 1 0.02698 0.06111 0.1008 2.84% amrex::Copy() 193 0.08217 0.08795 0.09985 2.81% FabArray::setVal() 143 0.06441 0.06993 0.07759 2.18% Castro::initialize_advance() 10 0.06794 0.07128 0.07726 2.17% FabArray::ParallelCopy_finish() 41 0.04305 0.06267 0.07719 2.17% Castro::computeInitialDt() 2 0.002573 0.03677 0.07636 2.15% Castro::computeTemp() 63 0.06326 0.06841 0.07326 2.06% Castro::do_new_sources() 10 0.06019 0.06457 0.06711 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04389 0.04738 0.05107 1.44% Castro::reset_internal_energy(Fab) 1008 0.04359 0.04707 0.05076 1.43% Castro::normalize_species() 62 0.04213 0.04407 0.04707 1.32% StateDataPhysBCFunct::() 41 0.03249 0.03638 0.04523 1.27% StateData::FillBoundary(geom) 41 0.03238 0.03625 0.0451 1.27% FabArray::ParallelCopy_nowait() 41 0.04288 0.04371 0.04459 1.26% Castro::construct_new_source() 50 0.02925 0.03076 0.03185 0.90% Gravity::interpolate_monopole_grav() 21 0.02784 0.02945 0.0307 0.86% Castro::finalize_do_advance() 10 0.01622 0.02417 0.0302 0.85% Castro::construct_new_gravity_source() 10 0.0233 0.02448 0.02556 0.72% Castro::post_init() 1 0.02368 0.02412 0.02437 0.69% Amr::writePlotFile() 2 0.02246 0.02259 0.02296 0.65% Castro::post_timestep() 10 0.01568 0.01692 0.01934 0.54% Castro::check_for_nan() 20 0.009973 0.01183 0.0151 0.42% MultiFab::contains_nan() 20 0.009944 0.0118 0.01505 0.42% FabArray::setDomainBndry() 41 0.01128 0.01224 0.014 0.39% Castro::apply_source_to_state() 20 0.01133 0.01248 0.01346 0.38% FabArray::Saxpy() 20 0.01129 0.01244 0.01341 0.38% VisMF::Write(FabArray) 2 0.009087 0.00969 0.01218 0.34% Castro::Castro() 1 0.009414 0.01058 0.01169 0.33% Castro::construct_old_source() 50 0.008603 0.009629 0.0102 0.29% Castro::construct_old_gravity_source() 10 0.008532 0.009552 0.01012 0.28% Castro::computeNewDt() 9 0.009361 0.009372 0.009381 0.26% Castro::enforce_min_density() 62 0.007118 0.007588 0.007954 0.22% Other 200 0.02624 0.03064 0.03503 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8674 KiB 8678 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6761 KiB 6766 KiB 6768 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4560 KiB 4568 KiB 4573 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 248 KiB 278 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2804 KiB 2805 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 241 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 48 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 76 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-25-g4460afbbce25) finalized