Initializing AMReX (24.09-27-g028638564f7b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-27-g028638564f7b) initialized Starting run at 05:36:36 UTC on 2024-09-13. Successfully read inputs file ... Castro git describe: 24.09-7-g7059f8b36 AMReX git describe: 24.09-27-g028638564 Microphysics git describe: 24.09-2-g1e1dc144 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01439868 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343894971 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339921789 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328371174 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.331766317 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.385876873 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.314823386 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.306230479 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305980118 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306796924 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307917759 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007674085 seconds Ending run at 05:36:40 UTC on 2024-09-13. Run time = 3.482665667 Run time without initialization = 3.284428158 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4819 ... 3.4824 ... 3.4827 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2482 2.3119 2.3722 68.11% Gravity::make_radial_gravity() 21 0.2985 0.3051 0.3202 9.19% check_for_negative_density() 10 0.01675 0.07984 0.1442 4.14% Castro::initData() 1 0.0488 0.0909 0.1307 3.75% Castro::estTimeStep() 21 0.03024 0.07361 0.118 3.39% amrex::Copy() 193 0.07045 0.08285 0.09799 2.81% FabArray::ParallelCopy_finish() 41 0.03944 0.06092 0.0805 2.31% FabArray::setVal() 143 0.06276 0.06724 0.07285 2.09% Castro::reset_internal_energy(Fab) 1008 0.04446 0.04707 0.04851 1.39% Castro::normalize_species() 62 0.04183 0.0426 0.04453 1.28% FabArray::ParallelCopy_nowait() 41 0.03623 0.04101 0.04207 1.21% FillPatchIterator::Initialize 41 0.02867 0.03328 0.0369 1.06% StateData::FillBoundary(geom) 41 0.03093 0.03366 0.0363 1.04% Gravity::interpolate_monopole_grav() 21 0.02761 0.02963 0.03203 0.92% Castro::construct_new_gravity_source() 10 0.02277 0.02457 0.02666 0.77% Castro::computeTemp() 63 0.02008 0.02094 0.02155 0.62% Castro::initialize_do_advance() 10 0.01173 0.01648 0.01832 0.53% Castro::initialize_advance() 10 0.01061 0.012 0.01442 0.41% FabArray::setDomainBndry() 41 0.007487 0.01021 0.01267 0.36% FabArray::Saxpy() 20 0.01014 0.01176 0.01254 0.36% VisMF::Write(FabArray) 2 0.009111 0.009628 0.012 0.34% MultiFab::contains_nan() 20 0.009604 0.01049 0.01116 0.32% Amr::writePlotFile() 2 0.00749 0.00996 0.01095 0.31% Castro::initMFs() 1 0.006349 0.007644 0.009978 0.29% Castro::construct_old_gravity_source() 10 0.006388 0.008698 0.009536 0.27% Castro::construct_new_source() 50 0.005748 0.006084 0.00654 0.19% main() 1 0.003597 0.004145 0.004483 0.13% Gravity::get_new_grav_vector() 11 0.002974 0.003566 0.004039 0.12% Gravity::get_old_grav_vector() 10 0.001666 0.002179 0.002659 0.08% Amr::coarseTimeStep() 10 0.001037 0.001611 0.002321 0.07% Castro::finalize_do_advance() 10 0.0005103 0.001061 0.001577 0.05% AmrLevel::FillPatch() 41 0.0007947 0.001035 0.001167 0.03% Amr::timeStep() 10 0.0001625 0.0002225 0.0004476 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002942 0.0003073 0.000334 0.01% Castro::clean_state() 62 0.0001322 0.0001582 0.0001922 0.01% Castro::do_advance_ctu() 10 0.0001456 0.0001608 0.0001775 0.01% StateDataPhysBCFunct::() 41 9.847e-05 0.0001177 0.0001621 0.00% FillPatchIterator::FillFromLevel0() 41 9.635e-05 0.0001121 0.0001466 0.00% Castro::do_old_sources() 10 7.678e-05 9.262e-05 0.0001106 0.00% FabArray::ParallelCopy() 41 7.665e-05 8.636e-05 9.921e-05 0.00% Castro::construct_old_source() 50 6.174e-05 8.026e-05 9.86e-05 0.00% FillPatchSingleLevel 41 6.521e-05 7.741e-05 9.541e-05 0.00% Castro::Castro() 1 5.647e-05 6.471e-05 9.012e-05 0.00% Amr::FinalizeInit() 1 3.37e-06 1.438e-05 8.451e-05 0.00% Castro::apply_source_to_state() 20 3.513e-05 5.053e-05 7.409e-05 0.00% Castro::do_new_sources() 10 4.854e-05 5.997e-05 6.971e-05 0.00% Amr::defBaseLevel() 1 4.521e-05 5.31e-05 6.334e-05 0.00% Castro::subcycle_advance_ctu() 10 4.251e-05 4.982e-05 5.597e-05 0.00% Castro::construct_old_gravity() 10 3.597e-05 4.012e-05 5.333e-05 0.00% Castro::advance() 10 3.962e-05 4.537e-05 4.915e-05 0.00% Castro::construct_new_gravity() 10 3.127e-05 3.526e-05 3.792e-05 0.00% Castro::expand_state() 10 2.326e-05 2.755e-05 3.287e-05 0.00% Castro::check_for_nan() 20 2.239e-05 2.635e-05 3.177e-05 0.00% Amr::init() 1 1.999e-06 6.786e-06 2.307e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.572e-06 1.327e-05 2.252e-05 0.00% Castro::post_timestep() 10 1.489e-05 1.646e-05 1.9e-05 0.00% Castro::computeNewDt() 9 8.434e-06 9.266e-06 1.277e-05 0.00% Castro::post_init() 1 9.242e-06 1.036e-05 1.221e-05 0.00% Amr::InitializeInit() 1 2.828e-06 3.602e-06 5.714e-06 0.00% Castro::computeInitialDt() 2 3.022e-06 3.999e-06 4.692e-06 0.00% Amr::initialInit() 1 1.362e-06 1.937e-06 2.718e-06 0.00% Other 260 0.016 0.01881 0.02191 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.482 3.482 3.483 100.00% Amr::coarseTimeStep() 10 3.272 3.272 3.272 93.96% Amr::timeStep() 10 3.26 3.261 3.261 93.64% Castro::advance() 10 3.244 3.245 3.245 93.17% Castro::subcycle_advance_ctu() 10 3.167 3.17 3.175 91.18% Castro::do_advance_ctu() 10 3.167 3.17 3.175 91.17% Castro::construct_ctu_hydro_source() 10 2.409 2.413 2.418 69.42% Gravity::make_radial_gravity() 21 0.3156 0.3219 0.334 9.59% AmrLevel::FillPatch() 41 0.193 0.2125 0.2269 6.52% Gravity::get_new_grav_vector() 11 0.2118 0.2127 0.2142 6.15% Castro::construct_old_gravity() 10 0.1953 0.1992 0.2093 6.01% Gravity::get_old_grav_vector() 10 0.1946 0.1985 0.2086 5.99% Amr::init() 1 0.1977 0.1978 0.1979 5.68% Castro::construct_new_gravity() 10 0.1884 0.1897 0.1906 5.47% FillPatchIterator::Initialize 41 0.1636 0.1796 0.1898 5.45% Amr::initialInit() 1 0.1832 0.1833 0.1834 5.27% Castro::initialize_do_advance() 10 0.1598 0.1664 0.1721 4.94% Amr::InitializeInit() 1 0.06773 0.1123 0.1562 4.49% Amr::defBaseLevel() 1 0.06773 0.1123 0.1562 4.49% FillPatchIterator::FillFromLevel0() 41 0.1163 0.1361 0.1488 4.27% FillPatchSingleLevel 41 0.1162 0.136 0.1487 4.27% check_for_negative_density() 10 0.01675 0.07984 0.1442 4.14% Castro::initData() 1 0.05261 0.09456 0.1342 3.85% Castro::expand_state() 10 0.1068 0.1131 0.12 3.44% Castro::clean_state() 62 0.1121 0.1162 0.1183 3.40% Castro::estTimeStep() 21 0.03024 0.07361 0.118 3.39% FabArray::ParallelCopy() 41 0.0813 0.1021 0.1169 3.36% Amr::FinalizeInit() 1 0.02704 0.07096 0.1155 3.32% Castro::do_old_sources() 10 0.09297 0.1014 0.1082 3.11% amrex::Copy() 193 0.07045 0.08285 0.09799 2.81% Castro::computeInitialDt() 2 0.002242 0.04623 0.0907 2.60% FabArray::ParallelCopy_finish() 41 0.03944 0.06092 0.0805 2.31% Castro::initialize_advance() 10 0.06527 0.07091 0.07383 2.12% FabArray::setVal() 143 0.06276 0.06724 0.07285 2.09% Castro::computeTemp() 63 0.06483 0.06831 0.06993 2.01% Castro::do_new_sources() 10 0.05784 0.06323 0.06871 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04475 0.04738 0.04881 1.40% Castro::reset_internal_energy(Fab) 1008 0.04446 0.04707 0.04851 1.39% Castro::normalize_species() 62 0.04183 0.0426 0.04453 1.28% FabArray::ParallelCopy_nowait() 41 0.03633 0.0411 0.04216 1.21% StateDataPhysBCFunct::() 41 0.03105 0.03378 0.03646 1.05% StateData::FillBoundary(geom) 41 0.03093 0.03366 0.0363 1.04% Castro::construct_new_source() 50 0.02863 0.03065 0.03288 0.94% Gravity::interpolate_monopole_grav() 21 0.02761 0.02963 0.03203 0.92% Castro::construct_new_gravity_source() 10 0.02277 0.02457 0.02666 0.77% Castro::post_init() 1 0.02403 0.02427 0.02445 0.70% Castro::finalize_do_advance() 10 0.01357 0.01953 0.02442 0.70% Amr::writePlotFile() 2 0.02219 0.02232 0.02249 0.65% Castro::post_timestep() 10 0.01563 0.01597 0.01645 0.47% Castro::Castro() 1 0.009412 0.01117 0.01389 0.40% FabArray::setDomainBndry() 41 0.007487 0.01021 0.01267 0.36% Castro::apply_source_to_state() 20 0.0102 0.01181 0.01261 0.36% FabArray::Saxpy() 20 0.01014 0.01176 0.01254 0.36% VisMF::Write(FabArray) 2 0.009111 0.009628 0.012 0.34% Castro::check_for_nan() 20 0.009631 0.01052 0.0112 0.32% MultiFab::contains_nan() 20 0.009604 0.01049 0.01116 0.32% Castro::initMFs() 1 0.006349 0.007644 0.009978 0.29% Castro::construct_old_source() 50 0.00645 0.008778 0.009624 0.28% Castro::construct_old_gravity_source() 10 0.006388 0.008698 0.009536 0.27% Castro::computeNewDt() 9 0.008895 0.008922 0.008933 0.26% AmrLevel::AmrLevel(dm) 1 0.005464 0.006376 0.008059 0.23% Other 260 0.02055 0.02379 0.02726 0.78% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8670 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6723 KiB 6729 KiB 6732 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4543 KiB 4548 KiB 4557 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 226 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2791 KiB 2794 KiB 2795 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 43 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-27-g028638564f7b) finalized