Initializing AMReX (24.09-28-gdfe17478d503)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-28-gdfe17478d503) initialized Starting run at 13:24:57 UTC on 2024-09-16. Successfully read inputs file ... Castro git describe: 24.09-19-gabe9edd6e AMReX git describe: 24.09-28-gdfe17478d Microphysics git describe: 24.09-2-g1e1dc144 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014718568 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.351102063 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.358691171 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.355708424 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.353210648 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36992551 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303727462 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303902891 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304627102 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303924665 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306507337 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008112513 seconds Ending run at 13:25:00 UTC on 2024-09-16. Run time = 3.509145375 Run time without initialization = 3.328300384 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5084 ... 3.5088 ... 3.5092 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2159 2.2967 2.3523 67.03% Gravity::make_radial_gravity() 21 0.3056 0.3109 0.3242 9.24% check_for_negative_density() 10 0.05241 0.1097 0.1937 5.52% FabArray::ParallelCopy_finish() 41 0.04503 0.0713 0.1206 3.44% Castro::initData() 1 0.04758 0.08536 0.1196 3.41% Castro::estTimeStep() 21 0.02879 0.07187 0.1113 3.17% amrex::Copy() 193 0.06119 0.07902 0.08452 2.41% FabArray::setVal() 143 0.05205 0.06807 0.08091 2.31% Castro::reset_internal_energy(Fab) 1008 0.04477 0.04649 0.04927 1.40% Castro::normalize_species() 62 0.04133 0.04241 0.04359 1.24% FabArray::ParallelCopy_nowait() 41 0.0327 0.0399 0.04204 1.20% FillPatchIterator::Initialize 41 0.02702 0.03358 0.03774 1.08% StateData::FillBoundary(geom) 41 0.03022 0.03252 0.03469 0.99% Gravity::interpolate_monopole_grav() 21 0.02753 0.02966 0.03127 0.89% Castro::construct_new_gravity_source() 10 0.02246 0.025 0.02819 0.80% Castro::initialize_do_advance() 10 0.01135 0.01796 0.02251 0.64% Castro::computeTemp() 63 0.01977 0.02069 0.02187 0.62% VisMF::Write(FabArray) 2 0.009089 0.009849 0.01328 0.38% FabArray::setDomainBndry() 41 0.006787 0.01049 0.01311 0.37% FabArray::Saxpy() 20 0.009965 0.01197 0.01291 0.37% Amr::coarseTimeStep() 10 0.005259 0.01108 0.01222 0.35% MultiFab::contains_nan() 20 0.009399 0.01031 0.01211 0.35% Castro::initialize_advance() 10 0.005561 0.009625 0.0121 0.34% Amr::writePlotFile() 2 0.007909 0.01014 0.01073 0.31% Castro::initMFs() 1 0.006433 0.006935 0.009391 0.27% Castro::construct_old_gravity_source() 10 0.006256 0.00862 0.009226 0.26% Castro::enforce_min_density() 62 0.00696 0.007292 0.007882 0.22% Castro::construct_new_source() 50 0.005416 0.005898 0.006227 0.18% main() 1 0.00347 0.003935 0.004321 0.12% Gravity::get_new_grav_vector() 11 0.002756 0.003548 0.003935 0.11% Gravity::get_old_grav_vector() 10 0.001507 0.002083 0.002485 0.07% Castro::finalize_do_advance() 10 0.0005601 0.001048 0.001573 0.04% AmrLevel::FillPatch() 41 0.000745 0.00101 0.001212 0.03% Amr::timeStep() 10 0.0001792 0.0002248 0.0004048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002651 0.0002731 0.0002863 0.01% Castro::do_advance_ctu() 10 0.0001357 0.0001546 0.0001704 0.00% Castro::clean_state() 62 0.0001392 0.0001571 0.0001694 0.00% StateDataPhysBCFunct::() 41 0.000101 0.0001162 0.0001678 0.00% FillPatchIterator::FillFromLevel0() 41 9.5e-05 0.0001149 0.0001388 0.00% Castro::Castro() 1 5.631e-05 8.905e-05 0.0001195 0.00% FabArray::ParallelCopy() 41 7.733e-05 9.09e-05 0.0001085 0.00% Castro::do_old_sources() 10 7.388e-05 9.008e-05 0.0001047 0.00% FillPatchSingleLevel 41 6.927e-05 7.818e-05 9.455e-05 0.00% Amr::FinalizeInit() 1 3.479e-06 1.452e-05 8.528e-05 0.00% Castro::do_new_sources() 10 4.872e-05 5.81e-05 7.724e-05 0.00% Castro::construct_old_source() 50 5.418e-05 6.88e-05 7.589e-05 0.00% Castro::computeNewDt() 9 8.755e-06 1.726e-05 7.121e-05 0.00% Amr::defBaseLevel() 1 5.408e-05 5.891e-05 6.336e-05 0.00% Castro::subcycle_advance_ctu() 10 4.101e-05 4.833e-05 6.276e-05 0.00% Castro::advance() 10 4.166e-05 4.745e-05 5.554e-05 0.00% Castro::apply_source_to_state() 20 3.538e-05 4.42e-05 4.981e-05 0.00% Castro::construct_old_gravity() 10 3.416e-05 3.713e-05 4.157e-05 0.00% Castro::construct_new_gravity() 10 2.703e-05 3.132e-05 3.657e-05 0.00% Castro::expand_state() 10 2.146e-05 2.467e-05 3.294e-05 0.00% Castro::check_for_nan() 20 2.319e-05 2.541e-05 3.094e-05 0.00% Castro::post_timestep() 10 1.706e-05 1.893e-05 2.3e-05 0.00% Castro::post_init() 1 8.049e-06 9.761e-06 1.37e-05 0.00% Amr::InitializeInit() 1 2.555e-06 3.649e-06 7.204e-06 0.00% Castro::computeInitialDt() 2 3.191e-06 3.85e-06 4.754e-06 0.00% Amr::init() 1 1.671e-06 2.266e-06 3.143e-06 0.00% Amr::initialInit() 1 1.512e-06 1.807e-06 2.181e-06 0.00% Other 199 0.009068 0.01199 0.01407 0.40% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.508 3.509 3.509 100.00% Amr::coarseTimeStep() 10 3.316 3.316 3.316 94.49% Amr::timeStep() 10 3.291 3.292 3.298 93.97% Castro::advance() 10 3.274 3.275 3.278 93.40% Castro::subcycle_advance_ctu() 10 3.191 3.203 3.222 91.80% Castro::do_advance_ctu() 10 3.191 3.203 3.222 91.80% Castro::construct_ctu_hydro_source() 10 2.426 2.427 2.43 69.24% Gravity::make_radial_gravity() 21 0.3236 0.3281 0.3365 9.59% AmrLevel::FillPatch() 41 0.1994 0.2205 0.2432 6.93% Gravity::get_new_grav_vector() 11 0.2247 0.2256 0.2263 6.45% FillPatchIterator::Initialize 41 0.1658 0.1883 0.2179 6.21% Castro::construct_new_gravity() 10 0.2025 0.2032 0.2035 5.80% Castro::construct_old_gravity() 10 0.1909 0.1929 0.1978 5.64% Gravity::get_old_grav_vector() 10 0.1898 0.192 0.1968 5.61% Castro::initialize_do_advance() 10 0.1715 0.1812 0.1939 5.52% check_for_negative_density() 10 0.05241 0.1097 0.1937 5.52% FillPatchIterator::FillFromLevel0() 41 0.1182 0.1442 0.1841 5.25% FillPatchSingleLevel 41 0.1181 0.1441 0.184 5.24% Amr::init() 1 0.1803 0.1805 0.1805 5.14% Amr::initialInit() 1 0.1654 0.1661 0.1662 4.74% FabArray::ParallelCopy() 41 0.08641 0.1114 0.1535 4.37% Castro::expand_state() 10 0.1115 0.1264 0.1449 4.13% Amr::InitializeInit() 1 0.06796 0.1065 0.14 3.99% Amr::defBaseLevel() 1 0.06796 0.1065 0.14 3.99% Castro::initData() 1 0.05134 0.08949 0.124 3.53% Castro::clean_state() 62 0.1139 0.1164 0.1221 3.48% FabArray::ParallelCopy_finish() 41 0.04503 0.0713 0.1206 3.44% Castro::estTimeStep() 21 0.02879 0.07187 0.1113 3.17% Amr::FinalizeInit() 1 0.02621 0.05959 0.09818 2.80% Castro::do_old_sources() 10 0.09147 0.09445 0.09605 2.74% amrex::Copy() 193 0.06119 0.07902 0.08452 2.41% FabArray::setVal() 143 0.05205 0.06807 0.08091 2.31% Castro::initialize_advance() 10 0.04951 0.06823 0.08009 2.28% Castro::computeInitialDt() 2 0.002246 0.03571 0.07425 2.12% Castro::do_new_sources() 10 0.05668 0.06435 0.07412 2.11% Castro::computeTemp() 63 0.06491 0.06745 0.07141 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04504 0.04676 0.04954 1.41% Castro::reset_internal_energy(Fab) 1008 0.04477 0.04649 0.04927 1.40% Castro::normalize_species() 62 0.04133 0.04241 0.04359 1.24% FabArray::ParallelCopy_nowait() 41 0.03282 0.04 0.04213 1.20% StateDataPhysBCFunct::() 41 0.03039 0.03263 0.03481 0.99% StateData::FillBoundary(geom) 41 0.03022 0.03252 0.03469 0.99% Castro::construct_new_source() 50 0.02787 0.03089 0.03385 0.96% Castro::finalize_do_advance() 10 0.0155 0.02522 0.03286 0.94% Gravity::interpolate_monopole_grav() 21 0.02753 0.02966 0.03127 0.89% Castro::construct_new_gravity_source() 10 0.02246 0.025 0.02819 0.80% Castro::post_init() 1 0.02314 0.02345 0.02355 0.67% Amr::writePlotFile() 2 0.02252 0.02262 0.02307 0.66% Castro::post_timestep() 10 0.01544 0.0163 0.01972 0.56% VisMF::Write(FabArray) 2 0.009089 0.009849 0.01328 0.38% FabArray::setDomainBndry() 41 0.006787 0.01049 0.01311 0.37% Castro::apply_source_to_state() 20 0.01001 0.01202 0.01296 0.37% FabArray::Saxpy() 20 0.009965 0.01197 0.01291 0.37% Castro::Castro() 1 0.01038 0.01107 0.0125 0.36% Castro::check_for_nan() 20 0.009424 0.01034 0.01215 0.35% MultiFab::contains_nan() 20 0.009399 0.01031 0.01211 0.35% Castro::computeNewDt() 9 0.01198 0.012 0.01202 0.34% Castro::initMFs() 1 0.006433 0.006935 0.009391 0.27% Castro::construct_old_source() 50 0.00631 0.008689 0.009302 0.27% Castro::construct_old_gravity_source() 10 0.006256 0.00862 0.009226 0.26% Castro::enforce_min_density() 62 0.00696 0.007292 0.007882 0.22% Other 199 0.01875 0.0229 0.02743 0.78% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6765 KiB 6769 KiB 6770 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4544 KiB 4560 KiB 4582 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 238 KiB 267 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2799 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 238 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 49 KiB 70 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-28-gdfe17478d503) finalized