Initializing AMReX (24.09-28-gdfe17478d503)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-28-gdfe17478d503) initialized Starting run at 05:28:17 UTC on 2024-09-16. Successfully read inputs file ... Castro git describe: 24.09-7-g7059f8b36 AMReX git describe: 24.09-28-gdfe17478d Microphysics git describe: 24.09-2-g1e1dc144 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020907404 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.43001861 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.392934682 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.380991529 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.407089871 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.386252559 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.386625037 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.383622841 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.384890549 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.38655507 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.393719466 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012759103 seconds Ending run at 05:28:21 UTC on 2024-09-16. Run time = 4.190486262 Run time without initialization = 3.952787352 Average number of zones advanced per microsecond: 0.663 Average number of zones advanced per microsecond per rank: 0.083 TinyProfiler total time across processes [min...avg...max]: 4.1898 ... 4.1903 ... 4.1905 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3569 2.6192 2.8512 68.04% check_for_negative_density() 10 0.01105 0.2476 0.5181 12.36% Gravity::make_radial_gravity() 21 0.2975 0.3165 0.3417 8.16% amrex::Copy() 193 0.09301 0.1164 0.1314 3.14% Castro::initData() 1 0.04891 0.0886 0.1202 2.87% FabArray::setVal() 143 0.09259 0.1003 0.1068 2.55% Castro::estTimeStep() 21 0.0245 0.05759 0.1062 2.53% FabArray::ParallelCopy_finish() 41 0.05323 0.06406 0.08098 1.93% FabArray::ParallelCopy_nowait() 41 0.05818 0.06324 0.06642 1.59% FillPatchIterator::Initialize 41 0.04685 0.05472 0.06051 1.44% Castro::reset_internal_energy(Fab) 1008 0.0495 0.05193 0.054 1.29% Castro::normalize_species() 62 0.04231 0.04424 0.04629 1.10% StateData::FillBoundary(geom) 41 0.036 0.04113 0.04617 1.10% Amr::InitAmr() 1 0.0002063 0.004776 0.0365 0.87% DistributionMapping::LeastUsedCPUs() 1 3.83e-05 0.03178 0.03636 0.87% Castro::construct_new_gravity_source() 10 0.02995 0.03275 0.03599 0.86% Gravity::interpolate_monopole_grav() 21 0.02807 0.02937 0.03023 0.72% Castro::initialize_do_advance() 10 0.02332 0.02529 0.0276 0.66% Castro::computeTemp() 63 0.02076 0.02282 0.0241 0.58% FabArray::setDomainBndry() 41 0.01433 0.01981 0.02382 0.57% FabArray::Saxpy() 20 0.01759 0.01952 0.02087 0.50% VisMF::Write(FabArray) 2 0.01185 0.01365 0.01852 0.44% Amr::writePlotFile() 2 0.01162 0.01432 0.01669 0.40% Castro::initialize_advance() 10 0.01567 0.01607 0.01646 0.39% Castro::construct_old_gravity_source() 10 0.01511 0.01593 0.01624 0.39% MultiFab::contains_nan() 20 0.01244 0.01422 0.01572 0.38% Castro::initMFs() 1 0.008567 0.01048 0.01446 0.35% StateData::define() 4 0.006885 0.00805 0.01047 0.25% Castro::construct_new_source() 50 0.007331 0.008135 0.008851 0.21% main() 1 0.006137 0.006633 0.006846 0.16% Gravity::get_new_grav_vector() 11 0.004035 0.005133 0.00628 0.15% Gravity::get_old_grav_vector() 10 0.002571 0.002908 0.003236 0.08% Amr::coarseTimeStep() 10 0.001097 0.001409 0.001911 0.05% AmrLevel::FillPatch() 41 0.00109 0.001229 0.001438 0.03% Castro::finalize_do_advance() 10 0.001117 0.001204 0.001245 0.03% Amr::timeStep() 10 0.0001569 0.0002687 0.0006397 0.02% Castro::reset_internal_energy(MultiFab) 63 0.000303 0.0003332 0.0003547 0.01% Castro::do_advance_ctu() 10 0.0001902 0.000214 0.0002822 0.01% Castro::clean_state() 62 0.0001855 0.0001997 0.0002316 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001321 0.0001595 0.0002004 0.00% StateDataPhysBCFunct::() 41 0.0001366 0.0001499 0.000174 0.00% Castro::do_old_sources() 10 0.0001127 0.0001247 0.0001502 0.00% FillPatchSingleLevel 41 8.797e-05 0.0001065 0.0001386 0.00% Castro::Castro() 1 6.686e-05 9.61e-05 0.0001362 0.00% FabArray::ParallelCopy() 41 0.0001038 0.0001222 0.0001323 0.00% Castro::construct_old_source() 50 8.801e-05 0.000103 0.0001306 0.00% Castro::apply_source_to_state() 20 5.96e-05 6.864e-05 9.147e-05 0.00% Castro::do_new_sources() 10 5.824e-05 7.023e-05 8.924e-05 0.00% Amr::defBaseLevel() 1 5.111e-05 6.448e-05 8.674e-05 0.00% Castro::subcycle_advance_ctu() 10 5.288e-05 6.831e-05 8.458e-05 0.00% Amr::FinalizeInit() 1 4.592e-06 1.473e-05 8.046e-05 0.00% Castro::advance() 10 4.968e-05 5.729e-05 6.58e-05 0.00% Castro::construct_old_gravity() 10 3.869e-05 4.542e-05 5.786e-05 0.00% Castro::expand_state() 10 2.936e-05 4.027e-05 5.227e-05 0.00% Castro::construct_new_gravity() 10 2.897e-05 3.891e-05 4.837e-05 0.00% Castro::check_for_nan() 20 2.529e-05 3.11e-05 4.068e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.17e-06 1.667e-05 2.983e-05 0.00% Castro::post_timestep() 10 1.689e-05 2.009e-05 2.279e-05 0.00% Castro::post_init() 1 8.485e-06 1.046e-05 1.471e-05 0.00% Amr::InitializeInit() 1 2.462e-06 4.554e-06 9.004e-06 0.00% Amr::initialInit() 1 1.714e-06 2.856e-06 7.861e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.04e-06 5.15e-06 7.164e-06 0.00% Castro::computeInitialDt() 2 4.557e-06 5.037e-06 5.648e-06 0.00% Amr::init() 1 2.271e-06 2.59e-06 3.221e-06 0.00% Other 262 0.01347 0.01697 0.01889 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.19 4.19 4.191 100.00% Amr::coarseTimeStep() 10 3.933 3.933 3.933 93.86% Amr::timeStep() 10 3.921 3.921 3.922 93.59% Castro::advance() 10 3.904 3.905 3.906 93.20% Castro::subcycle_advance_ctu() 10 3.796 3.799 3.805 90.81% Castro::do_advance_ctu() 10 3.796 3.799 3.805 90.81% Castro::construct_ctu_hydro_source() 10 2.885 2.89 2.896 69.11% check_for_negative_density() 10 0.01105 0.2476 0.5181 12.36% Gravity::make_radial_gravity() 21 0.3221 0.3398 0.3644 8.70% AmrLevel::FillPatch() 41 0.2729 0.2929 0.3119 7.44% FillPatchIterator::Initialize 41 0.2369 0.2436 0.2537 6.05% Castro::initialize_do_advance() 10 0.2209 0.2359 0.2509 5.99% Gravity::get_new_grav_vector() 11 0.236 0.2375 0.2395 5.72% Amr::init() 1 0.201 0.2328 0.2373 5.66% Castro::construct_old_gravity() 10 0.1949 0.2077 0.2257 5.39% Gravity::get_old_grav_vector() 10 0.194 0.2068 0.225 5.37% Amr::initialInit() 1 0.18 0.2126 0.2177 5.20% Castro::construct_new_gravity() 10 0.2056 0.2074 0.2088 4.98% Amr::InitializeInit() 1 0.07598 0.1492 0.183 4.37% Amr::defBaseLevel() 1 0.07597 0.1492 0.183 4.37% Castro::expand_state() 10 0.1458 0.1647 0.1827 4.36% FillPatchIterator::FillFromLevel0() 41 0.1566 0.1691 0.1768 4.22% FillPatchSingleLevel 41 0.1564 0.1689 0.1767 4.22% Castro::do_old_sources() 10 0.139 0.1399 0.141 3.36% FabArray::ParallelCopy() 41 0.117 0.1276 0.1395 3.33% amrex::Copy() 193 0.09301 0.1164 0.1314 3.14% Castro::clean_state() 62 0.1223 0.1271 0.1299 3.10% Castro::initData() 1 0.05275 0.09311 0.1254 2.99% FabArray::setVal() 143 0.09259 0.1003 0.1068 2.55% Castro::estTimeStep() 21 0.0245 0.05759 0.1062 2.53% Castro::initialize_advance() 10 0.09482 0.1008 0.1046 2.50% Amr::FinalizeInit() 1 0.03435 0.06339 0.104 2.48% Castro::do_new_sources() 10 0.07467 0.07934 0.08426 2.01% FabArray::ParallelCopy_finish() 41 0.05323 0.06406 0.08098 1.93% Castro::computeTemp() 63 0.07061 0.07509 0.07842 1.87% Castro::computeInitialDt() 2 0.002415 0.03163 0.0731 1.74% FabArray::ParallelCopy_nowait() 41 0.05835 0.06338 0.06656 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04985 0.05226 0.05431 1.30% Castro::reset_internal_energy(Fab) 1008 0.0495 0.05193 0.054 1.29% StateDataPhysBCFunct::() 41 0.03614 0.04128 0.04634 1.11% Castro::normalize_species() 62 0.04231 0.04424 0.04629 1.10% StateData::FillBoundary(geom) 41 0.036 0.04113 0.04617 1.10% Castro::construct_new_source() 50 0.03731 0.04088 0.04467 1.07% Amr::InitAmr() 1 0.0002094 0.004779 0.0365 0.87% DistributionMapping::SFCProcessorMapDoIt() 1 4.569e-05 0.03179 0.03637 0.87% DistributionMapping::LeastUsedCPUs() 1 3.83e-05 0.03178 0.03636 0.87% Castro::construct_new_gravity_source() 10 0.02995 0.03275 0.03599 0.86% Amr::writePlotFile() 2 0.03234 0.03305 0.03395 0.81% Castro::post_init() 1 0.0304 0.03131 0.03192 0.76% Gravity::interpolate_monopole_grav() 21 0.02807 0.02937 0.03023 0.72% Castro::finalize_do_advance() 10 0.01151 0.0181 0.0252 0.60% FabArray::setDomainBndry() 41 0.01433 0.01981 0.02382 0.57% Castro::apply_source_to_state() 20 0.01766 0.01958 0.02094 0.50% FabArray::Saxpy() 20 0.01759 0.01952 0.02087 0.50% Castro::Castro() 1 0.01414 0.01615 0.02003 0.48% VisMF::Write(FabArray) 2 0.01185 0.01365 0.01852 0.44% Castro::post_timestep() 10 0.01604 0.01624 0.01643 0.39% Castro::construct_old_source() 50 0.01525 0.01603 0.01635 0.39% Castro::construct_old_gravity_source() 10 0.01511 0.01593 0.01624 0.39% Castro::check_for_nan() 20 0.01247 0.01425 0.01575 0.38% MultiFab::contains_nan() 20 0.01244 0.01422 0.01572 0.38% Castro::initMFs() 1 0.008567 0.01048 0.01446 0.35% AmrLevel::AmrLevel(dm) 1 0.006899 0.008067 0.01049 0.25% StateData::define() 4 0.006885 0.00805 0.01047 0.25% Other 262 0.02834 0.03257 0.03531 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8581 KiB 8590 KiB 8596 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6722 KiB 6727 KiB 6728 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7071 KiB 7079 KiB 7081 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4526 KiB 4530 KiB 4534 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 243 KiB 266 KiB 288 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 19 KiB 20 KiB 24 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2792 KiB 2795 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 196 KiB 206 KiB 221 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 46 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2009 KiB 2011 KiB 2012 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 72 KiB 72 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 59 KiB 63 KiB 68 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-28-gdfe17478d503) finalized