Initializing AMReX (24.09-35-g23a7f34fd7a4)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-35-g23a7f34fd7a4) initialized Starting run at 05:39:30 UTC on 2024-09-18. Successfully read inputs file ... Castro git describe: 24.09-9-gf39525f5f AMReX git describe: 24.09-35-g23a7f34fd Microphysics git describe: 24.09-4-gca10c3ea reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015744905 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355012993 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331778485 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.340200049 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.340420268 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357949544 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305311622 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308015888 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307657125 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307298811 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306541246 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007619432 seconds Ending run at 05:39:34 UTC on 2024-09-18. Run time = 3.486317963 Run time without initialization = 3.272810426 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4859 ... 3.4861 ... 3.4864 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2411 2.2909 2.3451 67.26% Gravity::make_radial_gravity() 21 0.2987 0.3078 0.3186 9.14% Castro::initData() 1 0.04875 0.0908 0.1444 4.14% Castro::estTimeStep() 21 0.03979 0.09066 0.1389 3.98% check_for_negative_density() 10 0.0264 0.08237 0.1334 3.83% FabArray::ParallelCopy_finish() 41 0.03986 0.06245 0.08819 2.53% amrex::Copy() 193 0.06538 0.07557 0.0847 2.43% FabArray::setVal() 143 0.06048 0.06887 0.07993 2.29% Castro::reset_internal_energy(Fab) 1008 0.04409 0.04663 0.04844 1.39% Castro::normalize_species() 62 0.04174 0.04251 0.04385 1.26% FabArray::ParallelCopy_nowait() 41 0.03417 0.03953 0.0411 1.18% FillPatchIterator::Initialize 41 0.02899 0.03425 0.03931 1.13% StateData::FillBoundary(geom) 41 0.03034 0.03276 0.03458 0.99% Gravity::interpolate_monopole_grav() 21 0.02736 0.02923 0.03084 0.88% Castro::construct_new_gravity_source() 10 0.02319 0.02416 0.02525 0.72% Castro::initialize_do_advance() 10 0.01364 0.01863 0.02289 0.66% Castro::computeTemp() 63 0.01945 0.02057 0.02141 0.61% Amr::coarseTimeStep() 10 0.001955 0.009944 0.01353 0.39% Amr::writePlotFile() 2 0.008162 0.011 0.01325 0.38% VisMF::Write(FabArray) 2 0.008782 0.009849 0.01277 0.37% FabArray::Saxpy() 20 0.01017 0.01157 0.01258 0.36% Castro::initialize_advance() 10 0.005584 0.009741 0.01226 0.35% MultiFab::contains_nan() 20 0.009212 0.01029 0.01188 0.34% FabArray::setDomainBndry() 41 0.006885 0.009735 0.0112 0.32% Castro::construct_old_gravity_source() 10 0.00635 0.008583 0.009267 0.27% Castro::initMFs() 1 0.006717 0.007631 0.008985 0.26% Castro::enforce_min_density() 62 0.007083 0.007344 0.007729 0.22% Castro::construct_new_source() 50 0.00562 0.005951 0.006213 0.18% main() 1 0.003834 0.004083 0.004341 0.12% Gravity::get_new_grav_vector() 11 0.003071 0.003518 0.004332 0.12% Gravity::get_old_grav_vector() 10 0.001641 0.002009 0.002383 0.07% AmrLevel::FillPatch() 41 0.0007271 0.0009062 0.001129 0.03% Castro::finalize_do_advance() 10 0.0004868 0.0009296 0.001104 0.03% Amr::timeStep() 10 0.0001657 0.0002283 0.0004824 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002747 0.0002857 0.000308 0.01% Castro::computeNewDt() 9 8.859e-06 5.795e-05 0.0002403 0.01% Castro::clean_state() 62 0.0001341 0.0001499 0.0001809 0.01% Castro::do_advance_ctu() 10 0.0001169 0.0001487 0.000178 0.01% FillPatchIterator::FillFromLevel0() 41 9.455e-05 0.0001057 0.0001213 0.00% StateDataPhysBCFunct::() 41 9.491e-05 0.0001057 0.0001149 0.00% Castro::Castro() 1 5.407e-05 7.367e-05 0.0001131 0.00% FabArray::ParallelCopy() 41 7.991e-05 8.972e-05 9.562e-05 0.00% Castro::do_old_sources() 10 6.283e-05 8.057e-05 9.066e-05 0.00% Castro::construct_old_source() 50 4.32e-05 6.804e-05 8.119e-05 0.00% FillPatchSingleLevel 41 6.325e-05 7.219e-05 8.073e-05 0.00% Amr::FinalizeInit() 1 3.893e-06 1.195e-05 6.643e-05 0.00% Castro::do_new_sources() 10 4.686e-05 5.653e-05 6.62e-05 0.00% Castro::advance() 10 4.705e-05 5.309e-05 6.357e-05 0.00% Amr::defBaseLevel() 1 3.74e-05 5.156e-05 6.09e-05 0.00% Castro::post_timestep() 10 1.546e-05 2.3e-05 5.967e-05 0.00% Castro::apply_source_to_state() 20 3.004e-05 4.263e-05 5.922e-05 0.00% Castro::subcycle_advance_ctu() 10 3.976e-05 4.814e-05 5.485e-05 0.00% Castro::construct_old_gravity() 10 2.959e-05 3.637e-05 4.703e-05 0.00% Castro::construct_new_gravity() 10 2.758e-05 3.184e-05 4.246e-05 0.00% Castro::expand_state() 10 1.957e-05 2.418e-05 3.18e-05 0.00% Castro::check_for_nan() 20 2.369e-05 2.606e-05 2.92e-05 0.00% Amr::initialInit() 1 1.31e-06 4.104e-06 2.094e-05 0.00% Castro::post_init() 1 8.869e-06 9.985e-06 1.262e-05 0.00% Amr::InitializeInit() 1 2.539e-06 3.873e-06 9.745e-06 0.00% Castro::computeInitialDt() 2 3.287e-06 3.798e-06 4.576e-06 0.00% Amr::init() 1 1.899e-06 2.192e-06 2.835e-06 0.00% Other 199 0.01078 0.01347 0.01945 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.486 3.486 3.486 100.00% Amr::coarseTimeStep() 10 3.261 3.261 3.261 93.53% Amr::timeStep() 10 3.233 3.234 3.241 92.96% Castro::advance() 10 3.217 3.218 3.221 92.40% Castro::subcycle_advance_ctu() 10 3.135 3.144 3.15 90.35% Castro::do_advance_ctu() 10 3.135 3.144 3.15 90.35% Castro::construct_ctu_hydro_source() 10 2.391 2.394 2.398 68.77% Gravity::make_radial_gravity() 21 0.3138 0.3227 0.3323 9.53% AmrLevel::FillPatch() 41 0.1909 0.2099 0.2261 6.49% Gravity::get_new_grav_vector() 11 0.2144 0.2158 0.2172 6.23% Amr::init() 1 0.2129 0.2131 0.2131 6.11% Castro::construct_old_gravity() 10 0.1862 0.1926 0.2005 5.75% Gravity::get_old_grav_vector() 10 0.1851 0.1917 0.1994 5.72% Amr::initialInit() 1 0.1967 0.1974 0.1979 5.68% FillPatchIterator::Initialize 41 0.1622 0.1792 0.1931 5.54% Castro::construct_new_gravity() 10 0.1887 0.19 0.1915 5.49% Castro::initialize_do_advance() 10 0.1659 0.1763 0.1862 5.34% Amr::InitializeInit() 1 0.06974 0.1126 0.1675 4.81% Amr::defBaseLevel() 1 0.06973 0.1126 0.1675 4.81% FillPatchIterator::FillFromLevel0() 41 0.1153 0.1352 0.1542 4.42% FillPatchSingleLevel 41 0.1152 0.1351 0.1541 4.42% Castro::initData() 1 0.05235 0.09464 0.1483 4.25% Castro::estTimeStep() 21 0.03979 0.09066 0.1389 3.98% check_for_negative_density() 10 0.0264 0.08237 0.1334 3.83% Castro::expand_state() 10 0.1092 0.1211 0.1314 3.77% Amr::FinalizeInit() 1 0.02988 0.08475 0.1273 3.65% FabArray::ParallelCopy() 41 0.0804 0.1022 0.1225 3.51% Castro::clean_state() 62 0.1133 0.1166 0.1186 3.40% Castro::computeInitialDt() 2 0.002613 0.0575 0.1002 2.87% Castro::do_old_sources() 10 0.09126 0.09446 0.09702 2.78% FabArray::ParallelCopy_finish() 41 0.03986 0.06245 0.08819 2.53% amrex::Copy() 193 0.06538 0.07557 0.0847 2.43% FabArray::setVal() 143 0.06048 0.06887 0.07993 2.29% Castro::initialize_advance() 10 0.06388 0.07032 0.07966 2.29% Castro::computeTemp() 63 0.06383 0.06748 0.06972 2.00% Castro::do_new_sources() 10 0.05836 0.06237 0.06579 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04437 0.04691 0.04872 1.40% Castro::reset_internal_energy(Fab) 1008 0.04409 0.04663 0.04844 1.39% Castro::normalize_species() 62 0.04174 0.04251 0.04385 1.26% FabArray::ParallelCopy_nowait() 41 0.03425 0.03963 0.04118 1.18% StateDataPhysBCFunct::() 41 0.03044 0.03286 0.03469 0.99% StateData::FillBoundary(geom) 41 0.03034 0.03276 0.03458 0.99% Castro::construct_new_source() 50 0.02892 0.03011 0.03115 0.89% Gravity::interpolate_monopole_grav() 21 0.02736 0.02923 0.03084 0.88% Castro::post_init() 1 0.02622 0.02683 0.02737 0.78% Castro::construct_new_gravity_source() 10 0.02319 0.02416 0.02525 0.72% Amr::writePlotFile() 2 0.02288 0.02342 0.02418 0.69% Castro::finalize_do_advance() 10 0.01489 0.01896 0.02296 0.66% Castro::post_timestep() 10 0.01549 0.01624 0.01936 0.56% Castro::computeNewDt() 9 0.01268 0.01519 0.01724 0.49% VisMF::Write(FabArray) 2 0.008782 0.009849 0.01277 0.37% Castro::apply_source_to_state() 20 0.0102 0.01161 0.01263 0.36% FabArray::Saxpy() 20 0.01017 0.01157 0.01258 0.36% Castro::Castro() 1 0.01025 0.01145 0.01242 0.36% Castro::check_for_nan() 20 0.00924 0.01031 0.01191 0.34% MultiFab::contains_nan() 20 0.009212 0.01029 0.01188 0.34% FabArray::setDomainBndry() 41 0.006885 0.009735 0.0112 0.32% Castro::construct_old_source() 50 0.006394 0.008651 0.00934 0.27% Castro::construct_old_gravity_source() 10 0.00635 0.008583 0.009267 0.27% Castro::initMFs() 1 0.006717 0.007631 0.008985 0.26% Castro::enforce_min_density() 62 0.007083 0.007344 0.007729 0.22% Other 199 0.02128 0.02495 0.03227 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6693 KiB 6699 KiB 6703 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4493 KiB 4505 KiB 4515 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 230 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2764 KiB 2768 KiB 2768 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 236 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 46 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-35-g23a7f34fd7a4) finalized