Initializing AMReX (24.09-37-g3734079379bb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-37-g3734079379bb) initialized Starting run at 05:30:20 UTC on 2024-09-19. Successfully read inputs file ... Castro git describe: 24.09-9-gf39525f5f AMReX git describe: 24.09-37-g373407937 Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014429031 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347313731 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335684771 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.335651113 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.332902225 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.387458608 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.315497757 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.354319681 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.320546126 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.315535636 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.316314273 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008993595 seconds Ending run at 05:30:23 UTC on 2024-09-19. Run time = 3.563063698 Run time without initialization = 3.37563236 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5617 ... 3.5626 ... 3.5631 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2649 2.3215 2.4190 67.89% Gravity::make_radial_gravity() 21 0.2956 0.3045 0.3149 8.84% check_for_negative_density() 10 0.05833 0.1567 0.2156 6.05% Castro::initData() 1 0.0475 0.08566 0.1251 3.51% Castro::estTimeStep() 21 0.03197 0.07251 0.1145 3.21% FabArray::ParallelCopy_finish() 41 0.04096 0.06268 0.09877 2.77% amrex::Copy() 193 0.06608 0.07915 0.08667 2.43% FabArray::setVal() 143 0.05301 0.06551 0.07626 2.14% Castro::reset_internal_energy(Fab) 1008 0.04343 0.04611 0.04934 1.38% Castro::normalize_species() 62 0.04122 0.04323 0.04671 1.31% FabArray::ParallelCopy_nowait() 41 0.03883 0.04117 0.04272 1.20% FillPatchIterator::Initialize 41 0.02823 0.03325 0.03742 1.05% StateData::FillBoundary(geom) 41 0.03049 0.03339 0.03679 1.03% Gravity::interpolate_monopole_grav() 21 0.02757 0.02894 0.02943 0.83% Castro::construct_new_gravity_source() 10 0.02349 0.02492 0.0269 0.75% FabArray::Saxpy() 20 0.0111 0.01501 0.02298 0.64% Castro::computeTemp() 63 0.01968 0.02058 0.02195 0.62% Castro::initialize_do_advance() 10 0.01189 0.0164 0.01766 0.50% Castro::construct_old_gravity_source() 10 0.006636 0.01057 0.01687 0.47% MultiFab::contains_nan() 20 0.01031 0.01184 0.01306 0.37% Castro::initialize_advance() 10 0.00561 0.01048 0.01298 0.36% Amr::writePlotFile() 2 0.008069 0.01101 0.01283 0.36% VisMF::Write(FabArray) 2 0.009158 0.00992 0.01278 0.36% FabArray::setDomainBndry() 41 0.007423 0.01011 0.01171 0.33% Castro::initMFs() 1 0.006353 0.006681 0.008431 0.24% Castro::construct_new_source() 50 0.005563 0.006025 0.006286 0.18% main() 1 0.003554 0.004452 0.004976 0.14% Gravity::get_new_grav_vector() 11 0.002926 0.003434 0.003765 0.11% Amr::coarseTimeStep() 10 0.0007198 0.001802 0.002721 0.08% Gravity::get_old_grav_vector() 10 0.001729 0.002143 0.002646 0.07% AmrLevel::FillPatch() 41 0.0007975 0.001042 0.001257 0.04% Castro::finalize_do_advance() 10 0.0004824 0.0009818 0.001087 0.03% Amr::timeStep() 10 0.0001712 0.000227 0.0004197 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000283 0.0002935 0.0003045 0.01% Castro::clean_state() 62 0.0001551 0.000176 0.0002231 0.01% Castro::do_advance_ctu() 10 0.0001499 0.0001701 0.000192 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001021 0.0001217 0.0001497 0.00% Castro::do_old_sources() 10 7.586e-05 0.0001004 0.0001438 0.00% StateDataPhysBCFunct::() 41 0.0001019 0.0001147 0.0001321 0.00% Castro::Castro() 1 4.987e-05 8.925e-05 0.0001282 0.00% FabArray::ParallelCopy() 41 9.014e-05 0.0001017 0.0001159 0.00% Castro::construct_old_source() 50 4.979e-05 7.981e-05 0.0001125 0.00% FillPatchSingleLevel 41 7.444e-05 8.01e-05 9.051e-05 0.00% Amr::FinalizeInit() 1 3.55e-06 1.637e-05 8.985e-05 0.00% Castro::apply_source_to_state() 20 4.295e-05 5.511e-05 7.536e-05 0.00% Castro::advance() 10 4.37e-05 5.304e-05 6.314e-05 0.00% Castro::subcycle_advance_ctu() 10 5.203e-05 5.581e-05 6.184e-05 0.00% Castro::do_new_sources() 10 5.387e-05 5.808e-05 6.093e-05 0.00% Amr::defBaseLevel() 1 4.505e-05 4.894e-05 5.683e-05 0.00% Castro::construct_old_gravity() 10 3.123e-05 3.869e-05 4.481e-05 0.00% Castro::construct_new_gravity() 10 2.826e-05 3.395e-05 3.985e-05 0.00% Castro::expand_state() 10 2.292e-05 2.882e-05 3.675e-05 0.00% Castro::check_for_nan() 20 2.637e-05 2.878e-05 3.465e-05 0.00% Castro::post_timestep() 10 1.588e-05 1.797e-05 1.959e-05 0.00% Amr::init() 1 1.974e-06 4.416e-06 1.899e-05 0.00% Castro::post_init() 1 8.137e-06 1.133e-05 1.565e-05 0.00% Castro::computeNewDt() 9 7.819e-06 8.771e-06 9.941e-06 0.00% Castro::computeInitialDt() 2 3.454e-06 4.082e-06 5.569e-06 0.00% Amr::InitializeInit() 1 2.661e-06 3.285e-06 5.304e-06 0.00% Amr::initialInit() 1 1.424e-06 1.693e-06 2.369e-06 0.00% Other 261 0.01705 0.01889 0.02062 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.563 3.563 100.00% Amr::coarseTimeStep() 10 3.362 3.362 3.362 94.35% Amr::timeStep() 10 3.349 3.35 3.351 94.04% Castro::advance() 10 3.333 3.334 3.334 93.56% Castro::subcycle_advance_ctu() 10 3.26 3.264 3.278 92.01% Castro::do_advance_ctu() 10 3.26 3.264 3.278 92.00% Castro::construct_ctu_hydro_source() 10 2.497 2.499 2.501 70.20% Gravity::make_radial_gravity() 21 0.3115 0.3203 0.3275 9.19% AmrLevel::FillPatch() 41 0.1967 0.2134 0.2334 6.55% check_for_negative_density() 10 0.05833 0.1567 0.2156 6.05% Gravity::get_new_grav_vector() 11 0.2096 0.211 0.2128 5.97% FillPatchIterator::Initialize 41 0.1638 0.1811 0.2066 5.80% Castro::construct_old_gravity() 10 0.1885 0.1942 0.1994 5.60% Gravity::get_old_grav_vector() 10 0.1877 0.1935 0.1987 5.58% Castro::construct_new_gravity() 10 0.1881 0.189 0.1902 5.34% Amr::init() 1 0.1869 0.1871 0.1871 5.25% Castro::initialize_do_advance() 10 0.1624 0.166 0.1753 4.92% Amr::initialInit() 1 0.1721 0.1725 0.1726 4.85% FillPatchIterator::FillFromLevel0() 41 0.1148 0.1377 0.171 4.80% FillPatchSingleLevel 41 0.1147 0.1376 0.1709 4.80% Amr::InitializeInit() 1 0.06792 0.106 0.1464 4.11% Amr::defBaseLevel() 1 0.06792 0.106 0.1464 4.11% FabArray::ParallelCopy() 41 0.08226 0.104 0.1378 3.87% Castro::initData() 1 0.05133 0.08955 0.1285 3.61% Castro::expand_state() 10 0.107 0.1118 0.1268 3.56% Castro::clean_state() 62 0.1127 0.1169 0.1211 3.40% Castro::do_old_sources() 10 0.1099 0.1137 0.1166 3.27% Castro::estTimeStep() 21 0.03197 0.07251 0.1145 3.21% Amr::FinalizeInit() 1 0.02597 0.06644 0.1042 2.92% FabArray::ParallelCopy_finish() 41 0.04096 0.06268 0.09877 2.77% amrex::Copy() 193 0.06608 0.07915 0.08667 2.43% Castro::computeInitialDt() 2 0.002237 0.04263 0.08076 2.27% FabArray::setVal() 143 0.05301 0.06551 0.07626 2.14% Castro::computeTemp() 63 0.06341 0.06698 0.0716 2.01% Castro::initialize_advance() 10 0.05143 0.06641 0.0705 1.98% Castro::do_new_sources() 10 0.0592 0.06323 0.06944 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04372 0.0464 0.04965 1.39% Castro::reset_internal_energy(Fab) 1008 0.04343 0.04611 0.04934 1.38% Castro::normalize_species() 62 0.04122 0.04323 0.04671 1.31% FabArray::ParallelCopy_nowait() 41 0.03893 0.04126 0.0428 1.20% StateDataPhysBCFunct::() 41 0.03063 0.0335 0.03691 1.04% StateData::FillBoundary(geom) 41 0.03049 0.03339 0.03679 1.03% Castro::construct_new_source() 50 0.02953 0.03095 0.03303 0.93% Gravity::interpolate_monopole_grav() 21 0.02757 0.02894 0.02943 0.83% Castro::construct_new_gravity_source() 10 0.02349 0.02492 0.0269 0.75% Castro::finalize_do_advance() 10 0.0152 0.0216 0.02613 0.73% Amr::writePlotFile() 2 0.02351 0.02367 0.02404 0.67% Castro::post_init() 1 0.02305 0.02336 0.02349 0.66% Castro::apply_source_to_state() 20 0.01115 0.01507 0.02304 0.65% FabArray::Saxpy() 20 0.0111 0.01501 0.02298 0.64% Castro::construct_old_source() 50 0.006686 0.01065 0.01698 0.48% Castro::construct_old_gravity_source() 10 0.006636 0.01057 0.01687 0.47% Castro::post_timestep() 10 0.01502 0.0157 0.01662 0.47% Castro::check_for_nan() 20 0.01034 0.01187 0.01309 0.37% MultiFab::contains_nan() 20 0.01031 0.01184 0.01306 0.37% VisMF::Write(FabArray) 2 0.009158 0.00992 0.01278 0.36% FabArray::setDomainBndry() 41 0.007423 0.01011 0.01171 0.33% Castro::Castro() 1 0.01059 0.01085 0.0117 0.33% Castro::computeNewDt() 9 0.009269 0.009279 0.009288 0.26% Castro::initMFs() 1 0.006353 0.006681 0.008431 0.24% Other 261 0.02686 0.02932 0.03188 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8673 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6754 KiB 6760 KiB 6765 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4571 KiB 4576 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 222 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 229 KiB 234 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 43 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-37-g3734079379bb) finalized