Initializing AMReX (24.09-37-g3734079379bb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-37-g3734079379bb) initialized Starting run at 05:23:25 UTC on 2024-09-20. Successfully read inputs file ... Castro git describe: 24.09-12-gfb34ee127 AMReX git describe: 24.09-37-g373407937 Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015609112 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349257616 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342393387 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.333592441 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.340100565 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.396647918 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.318268968 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.318860462 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.318877283 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.320506042 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.315488136 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008907462 seconds Ending run at 05:23:29 UTC on 2024-09-20. Run time = 3.583395037 Run time without initialization = 3.368861564 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5812 ... 3.5823 ... 3.5835 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2719 2.3231 2.3960 66.86% Gravity::make_radial_gravity() 21 0.3019 0.3157 0.3294 9.19% check_for_negative_density() 10 0.02848 0.1033 0.1566 4.37% Castro::initData() 1 0.04862 0.08579 0.121 3.38% FabArray::ParallelCopy_finish() 41 0.06312 0.07855 0.1146 3.20% Castro::estTimeStep() 21 0.02565 0.06642 0.1054 2.94% amrex::Copy() 193 0.06644 0.0819 0.08749 2.44% FabArray::setVal() 143 0.05781 0.06889 0.078 2.18% Castro::normalize_species() 62 0.04129 0.04839 0.06053 1.69% Castro::reset_internal_energy(Fab) 1008 0.0464 0.04866 0.05196 1.45% FabArray::ParallelCopy_nowait() 41 0.03309 0.04142 0.04578 1.28% FillPatchIterator::Initialize 41 0.02683 0.03391 0.03826 1.07% StateData::FillBoundary(geom) 41 0.0311 0.03349 0.0354 0.99% Amr::InitAmr() 1 0.000203 0.003977 0.03037 0.85% Gravity::interpolate_monopole_grav() 21 0.02749 0.02938 0.03023 0.84% DistributionMapping::LeastUsedCPUs() 1 2.718e-05 0.02643 0.03021 0.84% Castro::construct_new_gravity_source() 10 0.02388 0.0245 0.02561 0.71% Castro::computeTemp() 63 0.0212 0.02198 0.02374 0.66% Castro::initialize_do_advance() 10 0.01126 0.01764 0.01961 0.55% MultiFab::contains_nan() 20 0.0113 0.012 0.01392 0.39% FabArray::Saxpy() 20 0.009258 0.01222 0.01351 0.38% Castro::initialize_advance() 10 0.01023 0.01207 0.01315 0.37% Amr::writePlotFile() 2 0.008216 0.01177 0.01307 0.36% VisMF::Write(FabArray) 2 0.009068 0.009798 0.01302 0.36% FabArray::setDomainBndry() 41 0.006339 0.01051 0.01295 0.36% Castro::construct_old_gravity_source() 10 0.005623 0.00861 0.009758 0.27% Amr::coarseTimeStep() 10 0.001884 0.006704 0.008876 0.25% Castro::initMFs() 1 0.006385 0.00668 0.008215 0.23% Castro::construct_new_source() 50 0.005449 0.006432 0.006901 0.19% main() 1 0.00298 0.00406 0.005227 0.15% Gravity::get_new_grav_vector() 11 0.002713 0.003435 0.004041 0.11% Gravity::get_old_grav_vector() 10 0.001548 0.002124 0.002522 0.07% AmrLevel::FillPatch() 41 0.0008369 0.0009222 0.001204 0.03% Castro::finalize_do_advance() 10 0.0003809 0.000861 0.0009711 0.03% Amr::timeStep() 10 0.0001599 0.0002395 0.0004494 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002799 0.0003275 0.000404 0.01% Castro::do_advance_ctu() 10 0.0001528 0.0001763 0.0002142 0.01% Castro::clean_state() 62 0.0001483 0.0001682 0.0001923 0.01% StateDataPhysBCFunct::() 41 0.0001071 0.0001301 0.0001749 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001068 0.000135 0.0001624 0.00% FabArray::ParallelCopy() 41 9.295e-05 0.0001067 0.0001398 0.00% Castro::do_old_sources() 10 8.454e-05 9.59e-05 0.0001109 0.00% FillPatchSingleLevel 41 7.585e-05 8.66e-05 0.0001077 0.00% Castro::Castro() 1 5.682e-05 8.411e-05 0.0001031 0.00% Amr::FinalizeInit() 1 3.556e-06 1.548e-05 8.625e-05 0.00% Castro::construct_old_source() 50 5.111e-05 6.71e-05 8.271e-05 0.00% Castro::do_new_sources() 10 5.537e-05 6.413e-05 7.461e-05 0.00% Castro::subcycle_advance_ctu() 10 4.129e-05 5.582e-05 7.261e-05 0.00% Amr::defBaseLevel() 1 4.273e-05 5.448e-05 6.087e-05 0.00% Castro::apply_source_to_state() 20 3.957e-05 4.834e-05 5.804e-05 0.00% Castro::advance() 10 4.711e-05 5.178e-05 5.729e-05 0.00% Castro::construct_new_gravity() 10 3.271e-05 3.801e-05 4.73e-05 0.00% Castro::construct_old_gravity() 10 3.511e-05 3.862e-05 4.302e-05 0.00% Castro::check_for_nan() 20 2.632e-05 2.905e-05 3.369e-05 0.00% Castro::post_timestep() 10 1.462e-05 1.907e-05 3.355e-05 0.00% Castro::expand_state() 10 2.234e-05 2.651e-05 3.031e-05 0.00% Castro::post_init() 1 7.85e-06 9.481e-06 1.098e-05 0.00% Castro::computeNewDt() 9 7.923e-06 8.989e-06 1.028e-05 0.00% Amr::InitializeInit() 1 2.601e-06 3.441e-06 6.01e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.896e-06 4.427e-06 5.825e-06 0.00% Castro::computeInitialDt() 2 3.989e-06 4.611e-06 5.208e-06 0.00% Amr::init() 1 1.969e-06 2.5e-06 3.168e-06 0.00% Amr::initialInit() 1 1.418e-06 1.738e-06 2.367e-06 0.00% Other 258 0.01709 0.01859 0.0199 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.581 3.582 3.583 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 93.62% Amr::timeStep() 10 3.335 3.337 3.342 93.26% Castro::advance() 10 3.318 3.319 3.32 92.64% Castro::subcycle_advance_ctu() 10 3.232 3.242 3.254 90.80% Castro::do_advance_ctu() 10 3.232 3.242 3.254 90.80% Castro::construct_ctu_hydro_source() 10 2.443 2.449 2.454 68.47% Gravity::make_radial_gravity() 21 0.3177 0.3319 0.3425 9.56% AmrLevel::FillPatch() 41 0.2087 0.231 0.2543 7.10% Castro::construct_old_gravity() 10 0.198 0.2095 0.2228 6.22% Gravity::get_old_grav_vector() 10 0.1972 0.2087 0.2221 6.20% FillPatchIterator::Initialize 41 0.1808 0.1984 0.2176 6.07% Gravity::get_new_grav_vector() 11 0.2111 0.2142 0.2171 6.06% Amr::init() 1 0.184 0.2104 0.2142 5.98% Castro::initialize_do_advance() 10 0.1655 0.1858 0.1995 5.57% Amr::initialInit() 1 0.1683 0.1945 0.1984 5.54% Castro::construct_new_gravity() 10 0.1894 0.1914 0.1936 5.40% FillPatchIterator::FillFromLevel0() 41 0.1408 0.154 0.1823 5.09% FillPatchSingleLevel 41 0.1407 0.1539 0.1821 5.08% Amr::InitializeInit() 1 0.07107 0.1327 0.1716 4.79% Amr::defBaseLevel() 1 0.07107 0.1327 0.1716 4.79% check_for_negative_density() 10 0.02848 0.1033 0.1566 4.37% FabArray::ParallelCopy() 41 0.1063 0.1202 0.148 4.13% Castro::expand_state() 10 0.1095 0.1284 0.142 3.96% Castro::clean_state() 62 0.1164 0.126 0.1417 3.95% Castro::initData() 1 0.05265 0.08984 0.1251 3.49% FabArray::ParallelCopy_finish() 41 0.06312 0.07855 0.1146 3.20% Castro::do_old_sources() 10 0.09546 0.1041 0.1113 3.10% Castro::estTimeStep() 21 0.02565 0.06642 0.1054 2.94% Amr::FinalizeInit() 1 0.02679 0.06179 0.09944 2.77% amrex::Copy() 193 0.06644 0.0819 0.08749 2.44% Castro::initialize_advance() 10 0.06151 0.07379 0.08386 2.34% FabArray::setVal() 143 0.05781 0.06889 0.078 2.18% Castro::computeInitialDt() 2 0.002393 0.03745 0.07508 2.10% Castro::computeTemp() 63 0.06815 0.07098 0.0743 2.07% Castro::do_new_sources() 10 0.0582 0.06483 0.07121 1.99% Castro::normalize_species() 62 0.04129 0.04839 0.06053 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04668 0.04899 0.05233 1.46% Castro::reset_internal_energy(Fab) 1008 0.0464 0.04866 0.05196 1.45% FabArray::ParallelCopy_nowait() 41 0.03319 0.04152 0.04588 1.28% StateDataPhysBCFunct::() 41 0.0312 0.03362 0.03556 0.99% StateData::FillBoundary(geom) 41 0.0311 0.03349 0.0354 0.99% Castro::construct_new_source() 50 0.03004 0.03093 0.03238 0.90% Amr::InitAmr() 1 0.0002063 0.00398 0.03037 0.85% Gravity::interpolate_monopole_grav() 21 0.02749 0.02938 0.03023 0.84% DistributionMapping::SFCProcessorMapDoIt() 1 3.215e-05 0.02643 0.03021 0.84% DistributionMapping::LeastUsedCPUs() 1 2.718e-05 0.02643 0.03021 0.84% Castro::finalize_do_advance() 10 0.01308 0.02017 0.02594 0.72% Castro::construct_new_gravity_source() 10 0.02388 0.0245 0.02561 0.71% Amr::writePlotFile() 2 0.02478 0.0249 0.02507 0.70% Castro::post_init() 1 0.02344 0.02396 0.02421 0.68% Castro::post_timestep() 10 0.01623 0.01757 0.02215 0.62% Castro::check_for_nan() 20 0.01133 0.01203 0.01395 0.39% MultiFab::contains_nan() 20 0.0113 0.012 0.01392 0.39% Castro::apply_source_to_state() 20 0.0093 0.01227 0.01357 0.38% FabArray::Saxpy() 20 0.009258 0.01222 0.01351 0.38% VisMF::Write(FabArray) 2 0.009068 0.009798 0.01302 0.36% FabArray::setDomainBndry() 41 0.006339 0.01051 0.01295 0.36% Castro::Castro() 1 0.01072 0.01102 0.01183 0.33% Castro::construct_old_source() 50 0.005675 0.008677 0.00984 0.27% Castro::construct_old_gravity_source() 10 0.005623 0.00861 0.009758 0.27% Castro::computeNewDt() 9 0.00966 0.009674 0.009688 0.27% Castro::initMFs() 1 0.006385 0.00668 0.008215 0.23% Other 258 0.02694 0.02908 0.03162 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8591 KiB 8600 KiB 8602 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6701 KiB 6707 KiB 6708 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7075 KiB 7080 KiB 7083 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4507 KiB 4520 KiB 4538 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 242 KiB 267 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2775 KiB 2778 KiB 2779 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 236 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 51 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2011 KiB 2013 KiB 2013 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 74 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-37-g3734079379bb) finalized