Initializing AMReX (24.09-38-g1bfdb84c124a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-38-g1bfdb84c124a) initialized Starting run at 05:31:00 UTC on 2024-09-23. Successfully read inputs file ... Castro git describe: 24.09-12-gfb34ee127 AMReX git describe: 24.09-38-g1bfdb84c1 Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014645762 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344371391 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328927946 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328004267 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.375326392 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.332450502 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302491435 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.342809928 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304457303 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303036793 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307662917 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007992206 seconds Ending run at 05:31:03 UTC on 2024-09-23. Run time = 3.528076714 Run time without initialization = 3.282693184 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.5270 ... 3.5277 ... 3.5281 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2364 2.2948 2.3225 65.83% Gravity::make_radial_gravity() 21 0.3048 0.3115 0.3244 9.19% check_for_negative_density() 10 0.06543 0.09534 0.1547 4.38% Castro::initData() 1 0.04716 0.09214 0.1429 4.05% Castro::estTimeStep() 21 0.03408 0.08232 0.1205 3.42% amrex::Copy() 193 0.06645 0.07841 0.08476 2.40% FabArray::ParallelCopy_finish() 41 0.04047 0.06064 0.07861 2.23% FabArray::setVal() 143 0.05899 0.06535 0.07742 2.19% Castro::reset_internal_energy(Fab) 1008 0.04584 0.04689 0.04815 1.36% Castro::normalize_species() 62 0.04158 0.04303 0.04591 1.30% FabArray::ParallelCopy_nowait() 41 0.03549 0.0399 0.0416 1.18% Amr::InitAmr() 1 0.0002176 0.004838 0.03696 1.05% DistributionMapping::LeastUsedCPUs() 1 3.219e-05 0.03217 0.0368 1.04% FillPatchIterator::Initialize 41 0.02846 0.03259 0.03594 1.02% StateData::FillBoundary(geom) 41 0.03029 0.03366 0.03552 1.01% Gravity::interpolate_monopole_grav() 21 0.02809 0.02938 0.03132 0.89% Castro::construct_new_gravity_source() 10 0.02245 0.02481 0.02771 0.79% Castro::computeTemp() 63 0.02046 0.02086 0.02151 0.61% Castro::initialize_do_advance() 10 0.01387 0.01704 0.0201 0.57% FabArray::Saxpy() 20 0.01114 0.01215 0.0129 0.37% FabArray::setDomainBndry() 41 0.008863 0.01041 0.01245 0.35% Castro::initialize_advance() 10 0.005592 0.009691 0.01238 0.35% VisMF::Write(FabArray) 2 0.009219 0.009646 0.01196 0.34% MultiFab::contains_nan() 20 0.01029 0.01104 0.01173 0.33% Amr::writePlotFile() 2 0.008021 0.01065 0.01139 0.32% Castro::initMFs() 1 0.006299 0.007955 0.01002 0.28% Castro::construct_old_gravity_source() 10 0.007227 0.008723 0.009402 0.27% Castro::construct_new_source() 50 0.005101 0.005819 0.006044 0.17% main() 1 0.003447 0.004079 0.004575 0.13% Gravity::get_new_grav_vector() 11 0.003091 0.003503 0.003715 0.11% Amr::coarseTimeStep() 10 0.001882 0.002561 0.003215 0.09% Gravity::get_old_grav_vector() 10 0.001635 0.002029 0.002516 0.07% Castro::finalize_do_advance() 10 0.0005034 0.001004 0.001524 0.04% AmrLevel::FillPatch() 41 0.0008392 0.000927 0.001047 0.03% Amr::timeStep() 10 0.0001622 0.0002154 0.0004517 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002791 0.0002995 0.0003346 0.01% Castro::do_advance_ctu() 10 0.0001313 0.0001547 0.0001852 0.01% StateDataPhysBCFunct::() 41 9.426e-05 0.0001213 0.0001703 0.00% Castro::clean_state() 62 0.0001356 0.0001515 0.0001653 0.00% FillPatchIterator::FillFromLevel0() 41 9.849e-05 0.000111 0.0001194 0.00% Castro::do_old_sources() 10 7.756e-05 9.094e-05 0.0001113 0.00% FabArray::ParallelCopy() 41 8.729e-05 9.242e-05 9.854e-05 0.00% Castro::Castro() 1 5.683e-05 6.739e-05 9.749e-05 0.00% FillPatchSingleLevel 41 7.158e-05 7.681e-05 8.943e-05 0.00% Amr::FinalizeInit() 1 3.329e-06 1.553e-05 8.321e-05 0.00% Castro::construct_old_source() 50 4.899e-05 6.342e-05 7.724e-05 0.00% Castro::do_new_sources() 10 4.964e-05 6.016e-05 7.697e-05 0.00% Amr::defBaseLevel() 1 4.929e-05 6.122e-05 7.216e-05 0.00% Castro::subcycle_advance_ctu() 10 3.508e-05 4.819e-05 6.919e-05 0.00% Castro::advance() 10 3.692e-05 4.68e-05 5.743e-05 0.00% Castro::construct_new_gravity() 10 3.015e-05 3.607e-05 5.298e-05 0.00% Castro::apply_source_to_state() 20 3.474e-05 4.198e-05 5.263e-05 0.00% Castro::construct_old_gravity() 10 3.242e-05 3.673e-05 4.465e-05 0.00% Castro::post_timestep() 10 1.468e-05 2.03e-05 4.235e-05 0.00% Castro::check_for_nan() 20 2.362e-05 2.86e-05 3.719e-05 0.00% Castro::expand_state() 10 2.015e-05 2.371e-05 2.736e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.385e-06 1.345e-05 1.852e-05 0.00% Castro::post_init() 1 9.604e-06 1.091e-05 1.361e-05 0.00% Castro::computeNewDt() 9 8.118e-06 8.863e-06 9.504e-06 0.00% Amr::InitializeInit() 1 2.888e-06 4.086e-06 8.251e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.969e-06 5.675e-06 7.182e-06 0.00% Castro::computeInitialDt() 2 4.031e-06 4.357e-06 5.387e-06 0.00% Amr::init() 1 2.116e-06 2.532e-06 2.879e-06 0.00% Amr::initialInit() 1 1.504e-06 1.929e-06 2.597e-06 0.00% Other 257 0.01682 0.01983 0.02334 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.527 3.528 3.528 100.00% Amr::coarseTimeStep() 10 3.27 3.27 3.27 92.69% Amr::timeStep() 10 3.257 3.257 3.258 92.34% Castro::advance() 10 3.241 3.241 3.242 91.88% Castro::subcycle_advance_ctu() 10 3.16 3.17 3.175 89.99% Castro::do_advance_ctu() 10 3.16 3.17 3.175 89.99% Castro::construct_ctu_hydro_source() 10 2.41 2.412 2.414 68.42% Gravity::make_radial_gravity() 21 0.3219 0.3281 0.3377 9.57% Amr::init() 1 0.2083 0.2404 0.245 6.94% Amr::initialInit() 1 0.1934 0.2254 0.2304 6.53% AmrLevel::FillPatch() 41 0.1957 0.2099 0.2219 6.29% Gravity::get_new_grav_vector() 11 0.2159 0.2172 0.2177 6.17% Castro::construct_old_gravity() 10 0.1924 0.1987 0.2067 5.86% Gravity::get_old_grav_vector() 10 0.1917 0.1979 0.2056 5.83% Amr::InitializeInit() 1 0.08699 0.146 0.2003 5.68% Amr::defBaseLevel() 1 0.08698 0.146 0.2003 5.68% Castro::construct_new_gravity() 10 0.1904 0.1914 0.1918 5.44% FillPatchIterator::Initialize 41 0.1616 0.1777 0.1864 5.28% Castro::initialize_do_advance() 10 0.1637 0.1714 0.1829 5.18% check_for_negative_density() 10 0.06543 0.09534 0.1547 4.38% FillPatchIterator::FillFromLevel0() 41 0.1155 0.1347 0.1479 4.19% FillPatchSingleLevel 41 0.1154 0.1346 0.1478 4.19% Castro::initData() 1 0.05081 0.09579 0.1467 4.16% Amr::FinalizeInit() 1 0.03007 0.07934 0.1273 3.61% Castro::expand_state() 10 0.1074 0.1171 0.1268 3.60% Castro::estTimeStep() 21 0.03408 0.08232 0.1205 3.42% Castro::clean_state() 62 0.1152 0.1175 0.1199 3.40% FabArray::ParallelCopy() 41 0.08125 0.1007 0.1143 3.24% Castro::computeInitialDt() 2 0.002603 0.05218 0.1005 2.85% Castro::do_old_sources() 10 0.09206 0.0946 0.09685 2.74% amrex::Copy() 193 0.06645 0.07841 0.08476 2.40% FabArray::ParallelCopy_finish() 41 0.04047 0.06064 0.07861 2.23% Castro::initialize_advance() 10 0.06244 0.06747 0.07759 2.20% FabArray::setVal() 143 0.05899 0.06535 0.07742 2.19% Castro::do_new_sources() 10 0.05948 0.06518 0.07456 2.11% Castro::computeTemp() 63 0.0669 0.06804 0.06952 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04614 0.04719 0.04845 1.37% Castro::reset_internal_energy(Fab) 1008 0.04584 0.04689 0.04815 1.36% Castro::normalize_species() 62 0.04158 0.04303 0.04591 1.30% FabArray::ParallelCopy_nowait() 41 0.03559 0.04 0.0417 1.18% Amr::InitAmr() 1 0.0002213 0.004841 0.03696 1.05% DistributionMapping::SFCProcessorMapDoIt() 1 3.932e-05 0.03218 0.03681 1.04% DistributionMapping::LeastUsedCPUs() 1 3.219e-05 0.03217 0.0368 1.04% StateDataPhysBCFunct::() 41 0.03039 0.03378 0.03569 1.01% StateData::FillBoundary(geom) 41 0.03029 0.03366 0.03552 1.01% Castro::construct_new_source() 50 0.02823 0.03063 0.03358 0.95% Gravity::interpolate_monopole_grav() 21 0.02809 0.02938 0.03132 0.89% Castro::finalize_do_advance() 10 0.012 0.02212 0.02845 0.81% Castro::construct_new_gravity_source() 10 0.02245 0.02481 0.02771 0.79% Castro::post_init() 1 0.0265 0.0268 0.02722 0.77% Amr::writePlotFile() 2 0.02272 0.02307 0.0234 0.66% Castro::post_timestep() 10 0.01535 0.01603 0.01699 0.48% Castro::Castro() 1 0.00947 0.01155 0.01413 0.40% Castro::apply_source_to_state() 20 0.01118 0.01219 0.01295 0.37% FabArray::Saxpy() 20 0.01114 0.01215 0.0129 0.37% FabArray::setDomainBndry() 41 0.008863 0.01041 0.01245 0.35% VisMF::Write(FabArray) 2 0.009219 0.009646 0.01196 0.34% Castro::check_for_nan() 20 0.01031 0.01106 0.01177 0.33% MultiFab::contains_nan() 20 0.01029 0.01104 0.01173 0.33% Castro::initMFs() 1 0.006299 0.007955 0.01002 0.28% Castro::construct_old_source() 50 0.007276 0.008786 0.009474 0.27% Castro::construct_old_gravity_source() 10 0.007227 0.008723 0.009402 0.27% Castro::computeNewDt() 9 0.009029 0.009039 0.009048 0.26% AmrLevel::AmrLevel(dm) 1 0.005227 0.006465 0.008622 0.24% Other 257 0.02134 0.02499 0.02928 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 41 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8563 KiB 8579 KiB 8586 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6633 KiB 6639 KiB 6642 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7058 KiB 7067 KiB 7069 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4476 KiB 4489 KiB 4496 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 223 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2752 KiB 2755 KiB 2756 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 237 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 43 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2005 KiB 2008 KiB 2009 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-38-g1bfdb84c124a) finalized