Initializing AMReX (24.09-40-g467dd681af11)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-40-g467dd681af11) initialized Starting run at 05:37:49 UTC on 2024-09-24. Successfully read inputs file ... Castro git describe: 24.09-12-gfb34ee127 AMReX git describe: 24.09-40-g467dd681a Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014342666 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346957849 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34678828 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325883195 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.3263366 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.379732453 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.316874183 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.309276453 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.312119967 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309001128 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.309787777 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007824847 seconds Ending run at 05:37:53 UTC on 2024-09-24. Run time = 3.489560577 Run time without initialization = 3.29556952 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4892 ... 3.4894 ... 3.4896 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2791 2.3060 2.3545 67.47% Gravity::make_radial_gravity() 21 0.2982 0.3058 0.3181 9.12% check_for_negative_density() 10 0.05646 0.1086 0.1383 3.96% Castro::initData() 1 0.04971 0.09041 0.1308 3.75% Castro::estTimeStep() 21 0.0267 0.07029 0.1105 3.17% amrex::Copy() 193 0.06342 0.08019 0.09462 2.71% FabArray::ParallelCopy_finish() 41 0.03649 0.05716 0.09071 2.60% FabArray::setVal() 143 0.0501 0.06486 0.07301 2.09% Castro::reset_internal_energy(Fab) 1008 0.04508 0.04683 0.04872 1.40% Castro::normalize_species() 62 0.04119 0.04256 0.04669 1.34% FabArray::ParallelCopy_nowait() 41 0.03817 0.04027 0.04165 1.19% FillPatchIterator::Initialize 41 0.02839 0.03223 0.03531 1.01% StateData::FillBoundary(geom) 41 0.03089 0.03251 0.0353 1.01% Gravity::interpolate_monopole_grav() 21 0.02773 0.02966 0.03178 0.91% Castro::construct_new_gravity_source() 10 0.0232 0.02452 0.02803 0.80% Castro::computeTemp() 63 0.01967 0.02065 0.02143 0.61% Castro::initialize_do_advance() 10 0.01155 0.01613 0.01722 0.49% Castro::initialize_advance() 10 0.0053 0.0106 0.01338 0.38% FabArray::Saxpy() 20 0.01029 0.01177 0.01335 0.38% FabArray::setDomainBndry() 41 0.007092 0.009746 0.01239 0.36% Amr::writePlotFile() 2 0.007515 0.01021 0.01222 0.35% VisMF::Write(FabArray) 2 0.008787 0.009662 0.01218 0.35% MultiFab::contains_nan() 20 0.01061 0.01126 0.01212 0.35% Castro::construct_old_gravity_source() 10 0.006546 0.008808 0.00947 0.27% Castro::enforce_min_density() 62 0.006972 0.007303 0.007765 0.22% Castro::construct_new_source() 50 0.00575 0.006102 0.006331 0.18% main() 1 0.003988 0.00416 0.004372 0.13% Gravity::get_new_grav_vector() 11 0.002921 0.003469 0.003789 0.11% Gravity::get_old_grav_vector() 10 0.001622 0.002019 0.002764 0.08% Amr::coarseTimeStep() 10 0.001397 0.001976 0.002402 0.07% AmrLevel::FillPatch() 41 0.0007526 0.001125 0.001639 0.05% Castro::finalize_do_advance() 10 0.0004862 0.0009816 0.001131 0.03% Amr::timeStep() 10 0.000179 0.0002337 0.0004493 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002756 0.0002939 0.0003309 0.01% Castro::clean_state() 62 0.0001329 0.000156 0.0001738 0.00% Castro::do_advance_ctu() 10 0.0001345 0.0001518 0.0001697 0.00% FillPatchIterator::FillFromLevel0() 41 9.388e-05 0.0001029 0.0001288 0.00% StateDataPhysBCFunct::() 41 9.693e-05 0.0001068 0.0001286 0.00% FabArray::ParallelCopy() 41 8.3e-05 9.204e-05 9.946e-05 0.00% Castro::do_old_sources() 10 8.081e-05 8.842e-05 9.813e-05 0.00% FillPatchSingleLevel 41 7.235e-05 8.015e-05 9.55e-05 0.00% Castro::Castro() 1 6.263e-05 7.945e-05 9.549e-05 0.00% Amr::FinalizeInit() 1 3.917e-06 1.568e-05 9.164e-05 0.00% Amr::defBaseLevel() 1 4.659e-05 6.264e-05 7.456e-05 0.00% Castro::construct_old_source() 50 6.206e-05 6.692e-05 7.419e-05 0.00% Castro::do_new_sources() 10 5.028e-05 6.029e-05 6.804e-05 0.00% Castro::subcycle_advance_ctu() 10 4.227e-05 5.193e-05 5.848e-05 0.00% Castro::advance() 10 4.036e-05 4.819e-05 5.802e-05 0.00% Castro::apply_source_to_state() 20 3.374e-05 4.101e-05 4.578e-05 0.00% Castro::construct_old_gravity() 10 3.131e-05 3.711e-05 4.494e-05 0.00% Castro::construct_new_gravity() 10 3.049e-05 3.557e-05 4.43e-05 0.00% Castro::expand_state() 10 1.991e-05 2.481e-05 3.057e-05 0.00% Castro::check_for_nan() 20 2.318e-05 2.655e-05 2.948e-05 0.00% Castro::post_timestep() 10 1.428e-05 1.743e-05 2.276e-05 0.00% Castro::post_init() 1 8.214e-06 9.724e-06 1.272e-05 0.00% Castro::computeNewDt() 9 8.114e-06 8.624e-06 9.224e-06 0.00% Amr::InitializeInit() 1 2.929e-06 4.414e-06 7.621e-06 0.00% Castro::computeInitialDt() 2 3.652e-06 4.282e-06 5.397e-06 0.00% Amr::init() 1 1.93e-06 2.218e-06 2.693e-06 0.00% Amr::initialInit() 1 1.23e-06 1.519e-06 1.838e-06 0.00% Other 200 0.01682 0.01963 0.0213 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.489 3.489 3.49 100.00% Amr::coarseTimeStep() 10 3.283 3.283 3.283 94.09% Amr::timeStep() 10 3.271 3.271 3.272 93.76% Castro::advance() 10 3.255 3.255 3.256 93.29% Castro::subcycle_advance_ctu() 10 3.181 3.185 3.2 91.71% Castro::do_advance_ctu() 10 3.181 3.185 3.2 91.71% Castro::construct_ctu_hydro_source() 10 2.432 2.436 2.438 69.87% Gravity::make_radial_gravity() 21 0.3142 0.322 0.3305 9.47% AmrLevel::FillPatch() 41 0.1845 0.2043 0.2222 6.37% Gravity::get_new_grav_vector() 11 0.2088 0.2105 0.2114 6.06% Castro::construct_old_gravity() 10 0.1951 0.1994 0.2064 5.92% Gravity::get_old_grav_vector() 10 0.1943 0.1988 0.2058 5.90% FillPatchIterator::Initialize 41 0.1543 0.1724 0.1964 5.63% Amr::init() 1 0.1934 0.1936 0.1936 5.55% Castro::construct_new_gravity() 10 0.1873 0.1881 0.1892 5.42% Amr::initialInit() 1 0.1786 0.179 0.1792 5.13% Castro::initialize_do_advance() 10 0.1549 0.1618 0.1704 4.88% FillPatchIterator::FillFromLevel0() 41 0.1139 0.1304 0.1609 4.61% FillPatchSingleLevel 41 0.1138 0.1303 0.1608 4.61% Amr::InitializeInit() 1 0.06813 0.1118 0.1527 4.37% Amr::defBaseLevel() 1 0.06812 0.1118 0.1527 4.37% check_for_negative_density() 10 0.05646 0.1086 0.1383 3.96% Castro::initData() 1 0.05317 0.0943 0.1346 3.86% FabArray::ParallelCopy() 41 0.07832 0.09762 0.1291 3.70% Castro::clean_state() 62 0.1145 0.1169 0.1233 3.53% Castro::expand_state() 10 0.1005 0.1086 0.1222 3.50% Amr::FinalizeInit() 1 0.02627 0.06717 0.1109 3.18% Castro::estTimeStep() 21 0.0267 0.07029 0.1105 3.17% Castro::do_old_sources() 10 0.09096 0.09911 0.1037 2.97% amrex::Copy() 193 0.06342 0.08019 0.09462 2.71% FabArray::ParallelCopy_finish() 41 0.03649 0.05716 0.09071 2.60% Castro::computeInitialDt() 2 0.00229 0.04307 0.08672 2.49% FabArray::setVal() 143 0.0501 0.06486 0.07301 2.09% Castro::initialize_advance() 10 0.05102 0.06721 0.07136 2.05% Castro::computeTemp() 63 0.06504 0.06777 0.07048 2.02% Castro::do_new_sources() 10 0.05875 0.06297 0.07011 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04537 0.04713 0.04905 1.41% Castro::reset_internal_energy(Fab) 1008 0.04508 0.04683 0.04872 1.40% Castro::normalize_species() 62 0.04119 0.04256 0.04669 1.34% FabArray::ParallelCopy_nowait() 41 0.03827 0.04036 0.04173 1.20% StateDataPhysBCFunct::() 41 0.031 0.03262 0.03541 1.01% StateData::FillBoundary(geom) 41 0.03089 0.03251 0.0353 1.01% Castro::construct_new_source() 50 0.02925 0.03062 0.03434 0.98% Gravity::interpolate_monopole_grav() 21 0.02773 0.02966 0.03178 0.91% Castro::construct_new_gravity_source() 10 0.0232 0.02452 0.02803 0.80% Castro::post_init() 1 0.02325 0.02369 0.02385 0.68% Castro::finalize_do_advance() 10 0.01249 0.01927 0.0232 0.66% Amr::writePlotFile() 2 0.02235 0.02246 0.02288 0.66% Castro::post_timestep() 10 0.01548 0.01581 0.01613 0.46% Castro::apply_source_to_state() 20 0.01032 0.01181 0.0134 0.38% FabArray::Saxpy() 20 0.01029 0.01177 0.01335 0.38% FabArray::setDomainBndry() 41 0.007092 0.009746 0.01239 0.36% Castro::Castro() 1 0.009387 0.0113 0.0122 0.35% VisMF::Write(FabArray) 2 0.008787 0.009662 0.01218 0.35% Castro::check_for_nan() 20 0.01064 0.01128 0.01215 0.35% MultiFab::contains_nan() 20 0.01061 0.01126 0.01212 0.35% Castro::construct_old_source() 50 0.006612 0.008874 0.009536 0.27% Castro::construct_old_gravity_source() 10 0.006546 0.008808 0.00947 0.27% Castro::computeNewDt() 9 0.008939 0.008945 0.008955 0.26% Castro::enforce_min_density() 62 0.006972 0.007303 0.007765 0.22% Other 200 0.02693 0.03067 0.0329 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6740 KiB 6744 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4553 KiB 4559 KiB 4584 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 195 KiB 216 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2798 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 235 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 41 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-40-g467dd681af11) finalized