Initializing AMReX (24.09-40-g467dd681af11)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-40-g467dd681af11) initialized Starting run at 05:21:24 UTC on 2024-09-25. Successfully read inputs file ... Castro git describe: 24.09-12-gfb34ee127 AMReX git describe: 24.09-40-g467dd681a Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014182167 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.368528238 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.355743632 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322334617 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.326541693 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.366582651 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311177051 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307122874 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306984689 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307338975 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308762005 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009061696 seconds Ending run at 05:21:28 UTC on 2024-09-25. Run time = 3.498695635 Run time without initialization = 3.294567582 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4982 ... 3.4986 ... 3.4988 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2582 2.3107 2.3572 67.37% Gravity::make_radial_gravity() 21 0.2974 0.3026 0.3131 8.95% check_for_negative_density() 10 0.04975 0.1026 0.1519 4.34% Castro::initData() 1 0.04992 0.09115 0.1419 4.06% Castro::estTimeStep() 21 0.0354 0.08039 0.1237 3.54% FabArray::ParallelCopy_finish() 41 0.04021 0.0545 0.09093 2.60% amrex::Copy() 193 0.06046 0.07807 0.08542 2.44% FabArray::setVal() 143 0.05268 0.06568 0.071 2.03% Castro::normalize_species() 62 0.04153 0.04619 0.0496 1.42% Castro::reset_internal_energy(Fab) 1008 0.04606 0.0478 0.04939 1.41% FabArray::ParallelCopy_nowait() 41 0.03518 0.04153 0.04797 1.37% FillPatchIterator::Initialize 41 0.02785 0.03207 0.03445 0.98% StateData::FillBoundary(geom) 41 0.03059 0.03236 0.0342 0.98% Gravity::interpolate_monopole_grav() 21 0.02747 0.02906 0.03042 0.87% Castro::construct_new_gravity_source() 10 0.0224 0.02442 0.02648 0.76% Castro::computeTemp() 63 0.02106 0.0215 0.0225 0.64% Castro::initialize_do_advance() 10 0.01173 0.01588 0.01769 0.51% MultiFab::contains_nan() 20 0.01022 0.01155 0.01417 0.41% FabArray::setDomainBndry() 41 0.007205 0.01064 0.01322 0.38% Castro::initialize_advance() 10 0.005307 0.0108 0.01316 0.38% Amr::writePlotFile() 2 0.008694 0.01127 0.01297 0.37% FabArray::Saxpy() 20 0.01001 0.01195 0.01294 0.37% VisMF::Write(FabArray) 2 0.009092 0.009611 0.01193 0.34% Castro::construct_old_gravity_source() 10 0.006186 0.008801 0.009492 0.27% Castro::initMFs() 1 0.006166 0.006798 0.007723 0.22% Castro::construct_new_source() 50 0.005668 0.00631 0.006682 0.19% main() 1 0.003375 0.003738 0.003896 0.11% Gravity::get_new_grav_vector() 11 0.002614 0.003342 0.003843 0.11% Amr::coarseTimeStep() 10 0.001523 0.002393 0.003662 0.10% Gravity::get_old_grav_vector() 10 0.001742 0.002172 0.002489 0.07% Castro::finalize_do_advance() 10 0.0004348 0.0009712 0.001157 0.03% AmrLevel::FillPatch() 41 0.0007152 0.0008814 0.001122 0.03% Amr::timeStep() 10 0.0001482 0.000221 0.0004466 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0002943 0.0003139 0.01% Castro::do_advance_ctu() 10 0.0001383 0.0001553 0.0001757 0.01% Castro::clean_state() 62 0.000143 0.0001593 0.0001747 0.00% StateDataPhysBCFunct::() 41 9.673e-05 0.0001148 0.0001564 0.00% FillPatchIterator::FillFromLevel0() 41 9.713e-05 0.0001185 0.0001499 0.00% Castro::do_old_sources() 10 6.937e-05 8.943e-05 0.0001112 0.00% Castro::construct_old_source() 50 4.791e-05 7.395e-05 0.0001088 0.00% FillPatchSingleLevel 41 7.091e-05 8.123e-05 9.648e-05 0.00% FabArray::ParallelCopy() 41 8.59e-05 9.171e-05 9.554e-05 0.00% Castro::Castro() 1 5.428e-05 6.586e-05 8.133e-05 0.00% Amr::FinalizeInit() 1 3.662e-06 1.418e-05 7.157e-05 0.00% Castro::do_new_sources() 10 5.062e-05 5.92e-05 6.856e-05 0.00% Castro::subcycle_advance_ctu() 10 4.143e-05 5.357e-05 6.775e-05 0.00% Castro::apply_source_to_state() 20 3.777e-05 4.645e-05 6.079e-05 0.00% Castro::advance() 10 4.147e-05 4.979e-05 5.575e-05 0.00% Amr::defBaseLevel() 1 4.51e-05 4.972e-05 5.565e-05 0.00% Castro::construct_new_gravity() 10 3.098e-05 3.767e-05 4.825e-05 0.00% Castro::construct_old_gravity() 10 3.197e-05 3.702e-05 4.296e-05 0.00% Castro::check_for_nan() 20 2.4e-05 2.78e-05 3.953e-05 0.00% Castro::expand_state() 10 2.434e-05 2.566e-05 2.727e-05 0.00% Castro::post_timestep() 10 1.401e-05 1.66e-05 1.874e-05 0.00% Castro::post_init() 1 7.555e-06 1.005e-05 1.49e-05 0.00% Castro::computeNewDt() 9 7.712e-06 8.78e-06 1.007e-05 0.00% Amr::InitializeInit() 1 2.587e-06 3.597e-06 5.716e-06 0.00% Castro::computeInitialDt() 2 2.937e-06 3.666e-06 4.257e-06 0.00% Amr::init() 1 1.613e-06 2.173e-06 3.408e-06 0.00% Amr::initialInit() 1 1.232e-06 1.621e-06 2.264e-06 0.00% Other 261 0.01691 0.01892 0.0205 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.498 3.499 3.499 100.00% Amr::coarseTimeStep() 10 3.282 3.282 3.282 93.80% Amr::timeStep() 10 3.268 3.269 3.27 93.46% Castro::advance() 10 3.251 3.252 3.252 92.96% Castro::subcycle_advance_ctu() 10 3.174 3.179 3.197 91.38% Castro::do_advance_ctu() 10 3.174 3.179 3.197 91.38% Castro::construct_ctu_hydro_source() 10 2.43 2.436 2.441 69.77% Gravity::make_radial_gravity() 21 0.3121 0.3185 0.3258 9.31% AmrLevel::FillPatch() 41 0.194 0.2043 0.2172 6.21% Gravity::get_new_grav_vector() 11 0.207 0.2094 0.2117 6.05% Amr::init() 1 0.2036 0.2037 0.2038 5.82% Castro::construct_old_gravity() 10 0.1887 0.1932 0.1979 5.66% Gravity::get_old_grav_vector() 10 0.1876 0.1924 0.1972 5.64% FillPatchIterator::Initialize 41 0.1582 0.1716 0.1937 5.54% Amr::initialInit() 1 0.1888 0.1893 0.1894 5.41% Castro::construct_new_gravity() 10 0.1851 0.1871 0.1889 5.40% Castro::initialize_do_advance() 10 0.1621 0.1677 0.1811 5.18% Amr::InitializeInit() 1 0.06893 0.1114 0.1632 4.67% Amr::defBaseLevel() 1 0.06892 0.1114 0.1632 4.67% FillPatchIterator::FillFromLevel0() 41 0.1168 0.1289 0.1587 4.54% FillPatchSingleLevel 41 0.1167 0.1288 0.1586 4.53% check_for_negative_density() 10 0.04975 0.1026 0.1519 4.34% Castro::initData() 1 0.05396 0.09523 0.1457 4.16% Castro::clean_state() 62 0.1159 0.1223 0.1265 3.62% FabArray::ParallelCopy() 41 0.08377 0.09621 0.1263 3.61% Castro::expand_state() 10 0.1092 0.1139 0.1253 3.58% Castro::estTimeStep() 21 0.0354 0.08039 0.1237 3.54% Amr::FinalizeInit() 1 0.02559 0.07787 0.1204 3.44% Castro::do_old_sources() 10 0.09217 0.09791 0.1031 2.95% Castro::computeInitialDt() 2 0.002235 0.05402 0.09639 2.75% FabArray::ParallelCopy_finish() 41 0.04021 0.0545 0.09093 2.60% amrex::Copy() 193 0.06046 0.07807 0.08542 2.44% Castro::initialize_advance() 10 0.05099 0.06933 0.07476 2.14% Castro::computeTemp() 63 0.06761 0.06959 0.07221 2.06% FabArray::setVal() 143 0.05268 0.06568 0.071 2.03% Castro::do_new_sources() 10 0.05776 0.06425 0.06909 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04636 0.04809 0.04971 1.42% Castro::normalize_species() 62 0.04153 0.04619 0.0496 1.42% Castro::reset_internal_energy(Fab) 1008 0.04606 0.0478 0.04939 1.41% FabArray::ParallelCopy_nowait() 41 0.03528 0.04162 0.04805 1.37% StateDataPhysBCFunct::() 41 0.03075 0.03248 0.0343 0.98% StateData::FillBoundary(geom) 41 0.03059 0.03236 0.0342 0.98% Castro::construct_new_source() 50 0.02807 0.03073 0.03313 0.95% Gravity::interpolate_monopole_grav() 21 0.02747 0.02906 0.03042 0.87% Castro::construct_new_gravity_source() 10 0.0224 0.02442 0.02648 0.76% Castro::finalize_do_advance() 10 0.01305 0.01828 0.02454 0.70% Amr::writePlotFile() 2 0.02346 0.02359 0.02408 0.69% Castro::post_init() 1 0.02318 0.02331 0.02355 0.67% Castro::post_timestep() 10 0.0162 0.01687 0.01763 0.50% Castro::check_for_nan() 20 0.01025 0.01158 0.01421 0.41% MultiFab::contains_nan() 20 0.01022 0.01155 0.01417 0.41% FabArray::setDomainBndry() 41 0.007205 0.01064 0.01322 0.38% Castro::apply_source_to_state() 20 0.01005 0.012 0.01299 0.37% FabArray::Saxpy() 20 0.01001 0.01195 0.01294 0.37% VisMF::Write(FabArray) 2 0.009092 0.009611 0.01193 0.34% Castro::Castro() 1 0.009777 0.01049 0.01133 0.32% Castro::construct_old_source() 50 0.006234 0.008875 0.0096 0.27% Castro::construct_old_gravity_source() 10 0.006186 0.008801 0.009492 0.27% Castro::computeNewDt() 9 0.009058 0.009072 0.009091 0.26% Castro::initMFs() 1 0.006166 0.006798 0.007723 0.22% Other 261 0.0264 0.02954 0.03213 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8668 KiB 8675 KiB 8678 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6714 KiB 6721 KiB 6725 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7143 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4533 KiB 4540 KiB 4567 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 220 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2785 KiB 2788 KiB 2788 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 232 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-40-g467dd681af11) finalized