Initializing AMReX (24.09-40-g467dd681af11)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-40-g467dd681af11) initialized Starting run at 18:43:52 UTC on 2024-09-26. Successfully read inputs file ... Castro git describe: 24.09-13-gb9a0114ab AMReX git describe: 24.09-40-g467dd681a Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015540462 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.357311321 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3529329 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.331811544 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.354554603 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.392544595 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.315221216 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.316657441 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.315523371 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.342722053 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.316064596 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00935512 seconds Ending run at 18:43:55 UTC on 2024-09-26. Run time = 3.598355614 Run time without initialization = 3.410334182 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5965 ... 3.5977 ... 3.5984 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2627 2.3228 2.3752 66.01% Gravity::make_radial_gravity() 21 0.3061 0.3225 0.3358 9.33% check_for_negative_density() 10 0.0727 0.1299 0.1936 5.38% Castro::initData() 1 0.04718 0.08983 0.1224 3.40% Castro::estTimeStep() 21 0.03641 0.06591 0.11 3.06% FabArray::ParallelCopy_finish() 41 0.06921 0.07681 0.09483 2.64% amrex::Copy() 193 0.07638 0.08408 0.09185 2.55% FabArray::setVal() 143 0.0622 0.07048 0.07824 2.17% Castro::reset_internal_energy(Fab) 1008 0.04473 0.04854 0.0555 1.54% FabArray::ParallelCopy_nowait() 41 0.03706 0.04189 0.04458 1.24% Castro::normalize_species() 62 0.04155 0.04278 0.04336 1.20% StateData::FillBoundary(geom) 41 0.0325 0.0355 0.03913 1.09% FillPatchIterator::Initialize 41 0.0278 0.03456 0.0377 1.05% Gravity::interpolate_monopole_grav() 21 0.02959 0.03036 0.03142 0.87% Castro::construct_new_gravity_source() 10 0.0249 0.0258 0.02875 0.80% Castro::computeTemp() 63 0.02004 0.02136 0.02343 0.65% Castro::initialize_do_advance() 10 0.01439 0.01828 0.02075 0.58% FabArray::Saxpy() 20 0.0102 0.01235 0.01417 0.39% FabArray::setDomainBndry() 41 0.007047 0.01124 0.01377 0.38% VisMF::Write(FabArray) 2 0.009305 0.01 0.01365 0.38% MultiFab::contains_nan() 20 0.009673 0.01133 0.01345 0.37% Castro::initialize_advance() 10 0.01108 0.01185 0.01302 0.36% Amr::writePlotFile() 2 0.008667 0.01146 0.01281 0.36% Castro::enforce_min_density() 62 0.007061 0.00802 0.01235 0.34% Amr::coarseTimeStep() 10 0.001667 0.00916 0.01152 0.32% Castro::initMFs() 1 0.00631 0.007664 0.01016 0.28% Castro::construct_old_gravity_source() 10 0.008138 0.009236 0.01015 0.28% Castro::construct_new_source() 50 0.006112 0.006282 0.006448 0.18% main() 1 0.003105 0.004324 0.005055 0.14% Gravity::get_new_grav_vector() 11 0.003007 0.003699 0.004674 0.13% Gravity::get_old_grav_vector() 10 0.001556 0.002242 0.002545 0.07% Castro::finalize_do_advance() 10 0.001142 0.00122 0.001454 0.04% AmrLevel::FillPatch() 41 0.0009066 0.001051 0.001179 0.03% Amr::timeStep() 10 0.0001701 0.0002431 0.0005117 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002723 0.0003001 0.000371 0.01% Castro::do_advance_ctu() 10 0.0001574 0.0001766 0.0002036 0.01% Castro::clean_state() 62 0.0001464 0.0001631 0.0001816 0.01% FillPatchIterator::FillFromLevel0() 41 9.76e-05 0.0001208 0.000166 0.00% StateDataPhysBCFunct::() 41 9.552e-05 0.0001094 0.0001311 0.00% Castro::do_old_sources() 10 8.167e-05 9.915e-05 0.0001066 0.00% FillPatchSingleLevel 41 8.025e-05 8.705e-05 0.0001059 0.00% FabArray::ParallelCopy() 41 8.567e-05 9.433e-05 0.0001039 0.00% Amr::FinalizeInit() 1 3.383e-06 1.749e-05 0.0001011 0.00% Castro::construct_old_source() 50 6.166e-05 7.812e-05 9.923e-05 0.00% Castro::Castro() 1 5.482e-05 6.701e-05 8.649e-05 0.00% Amr::defBaseLevel() 1 4.691e-05 5.491e-05 6.997e-05 0.00% Castro::do_new_sources() 10 5.703e-05 6.217e-05 6.732e-05 0.00% Castro::advance() 10 4.491e-05 5.134e-05 6.229e-05 0.00% Castro::subcycle_advance_ctu() 10 5.458e-05 5.742e-05 6.141e-05 0.00% Castro::apply_source_to_state() 20 4.24e-05 4.843e-05 5.664e-05 0.00% Castro::construct_new_gravity() 10 3.25e-05 3.699e-05 4.797e-05 0.00% Castro::construct_old_gravity() 10 3.429e-05 3.81e-05 4.35e-05 0.00% Castro::check_for_nan() 20 2.4e-05 2.809e-05 3.703e-05 0.00% Castro::expand_state() 10 2.164e-05 2.594e-05 3.213e-05 0.00% Castro::computeNewDt() 9 8.563e-06 1.62e-05 2.759e-05 0.00% Castro::post_timestep() 10 1.643e-05 1.796e-05 2.006e-05 0.00% Castro::post_init() 1 8.699e-06 1.061e-05 1.622e-05 0.00% Amr::InitializeInit() 1 2.801e-06 3.345e-06 5.478e-06 0.00% Castro::computeInitialDt() 2 3.38e-06 3.823e-06 4.107e-06 0.00% Amr::init() 1 1.945e-06 2.35e-06 2.772e-06 0.00% Amr::initialInit() 1 1.56e-06 1.813e-06 2.119e-06 0.00% Other 199 0.01029 0.01309 0.01591 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.596 3.598 3.598 100.00% Amr::coarseTimeStep() 10 3.396 3.396 3.396 94.37% Amr::timeStep() 10 3.373 3.375 3.382 94.00% Castro::advance() 10 3.357 3.358 3.363 93.45% Castro::subcycle_advance_ctu() 10 3.276 3.282 3.29 91.43% Castro::do_advance_ctu() 10 3.276 3.282 3.29 91.43% Castro::construct_ctu_hydro_source() 10 2.472 2.474 2.479 68.88% Gravity::make_radial_gravity() 21 0.3234 0.3398 0.3557 9.88% AmrLevel::FillPatch() 41 0.2225 0.2343 0.2439 6.78% Gravity::get_new_grav_vector() 11 0.219 0.2225 0.2248 6.25% Castro::construct_old_gravity() 10 0.2018 0.209 0.2211 6.15% Gravity::get_old_grav_vector() 10 0.2011 0.2082 0.2205 6.13% FillPatchIterator::Initialize 41 0.195 0.2005 0.2069 5.75% Castro::initialize_do_advance() 10 0.1819 0.192 0.2019 5.61% Castro::construct_new_gravity() 10 0.1931 0.1966 0.198 5.50% check_for_negative_density() 10 0.0727 0.1299 0.1936 5.38% Amr::init() 1 0.1875 0.1876 0.1877 5.22% Amr::initialInit() 1 0.1718 0.1724 0.173 4.81% FillPatchIterator::FillFromLevel0() 41 0.1458 0.1547 0.1651 4.59% FillPatchSingleLevel 41 0.1457 0.1546 0.165 4.58% Amr::InitializeInit() 1 0.0673 0.1112 0.1429 3.97% Amr::defBaseLevel() 1 0.0673 0.1112 0.1429 3.97% Castro::expand_state() 10 0.1233 0.1343 0.1401 3.89% FabArray::ParallelCopy() 41 0.1084 0.1189 0.1321 3.67% Castro::clean_state() 62 0.1141 0.1203 0.1292 3.59% Castro::initData() 1 0.05065 0.09346 0.126 3.50% Castro::estTimeStep() 21 0.03641 0.06591 0.11 3.06% Castro::do_old_sources() 10 0.09542 0.1037 0.1071 2.97% Amr::FinalizeInit() 1 0.02996 0.06121 0.105 2.92% FabArray::ParallelCopy_finish() 41 0.06921 0.07681 0.09483 2.64% amrex::Copy() 193 0.07638 0.08408 0.09185 2.55% Castro::computeTemp() 63 0.06505 0.0702 0.0793 2.20% FabArray::setVal() 143 0.0622 0.07048 0.07824 2.17% Castro::computeInitialDt() 2 0.002743 0.03434 0.07814 2.17% Castro::initialize_advance() 10 0.0636 0.07298 0.07796 2.17% Castro::do_new_sources() 10 0.06318 0.06578 0.07178 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04501 0.04884 0.05587 1.55% Castro::reset_internal_energy(Fab) 1008 0.04473 0.04854 0.0555 1.54% FabArray::ParallelCopy_nowait() 41 0.03715 0.04198 0.04466 1.24% Castro::normalize_species() 62 0.04155 0.04278 0.04336 1.20% StateDataPhysBCFunct::() 41 0.03263 0.03561 0.03926 1.09% StateData::FillBoundary(geom) 41 0.0325 0.0355 0.03913 1.09% Castro::construct_new_source() 50 0.03108 0.03208 0.03491 0.97% Gravity::interpolate_monopole_grav() 21 0.02959 0.03036 0.03142 0.87% Castro::construct_new_gravity_source() 10 0.0249 0.0258 0.02875 0.80% Castro::post_init() 1 0.02636 0.02691 0.02746 0.76% Castro::finalize_do_advance() 10 0.01355 0.02264 0.02562 0.71% Amr::writePlotFile() 2 0.0241 0.02464 0.02516 0.70% Castro::post_timestep() 10 0.01562 0.01657 0.01958 0.54% Castro::apply_source_to_state() 20 0.01025 0.0124 0.01423 0.40% FabArray::Saxpy() 20 0.0102 0.01235 0.01417 0.39% Castro::Castro() 1 0.00917 0.0112 0.01397 0.39% FabArray::setDomainBndry() 41 0.007047 0.01124 0.01377 0.38% VisMF::Write(FabArray) 2 0.009305 0.01 0.01365 0.38% Castro::check_for_nan() 20 0.009698 0.01136 0.01348 0.37% MultiFab::contains_nan() 20 0.009673 0.01133 0.01345 0.37% Castro::enforce_min_density() 62 0.007061 0.00802 0.01235 0.34% Castro::construct_old_source() 50 0.0082 0.009314 0.01024 0.28% Castro::computeNewDt() 9 0.01007 0.01017 0.01021 0.28% Castro::initMFs() 1 0.00631 0.007664 0.01016 0.28% Castro::construct_old_gravity_source() 10 0.008138 0.009236 0.01015 0.28% Other 199 0.02013 0.02477 0.03105 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8669 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6754 KiB 6760 KiB 6763 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4548 KiB 4556 KiB 4564 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 235 KiB 248 KiB 259 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2799 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 240 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 52 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-40-g467dd681af11) finalized