Initializing AMReX (24.09-40-g467dd681af11)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-40-g467dd681af11) initialized Starting run at 05:21:10 UTC on 2024-09-26. Successfully read inputs file ... Castro git describe: 24.09-12-gfb34ee127 AMReX git describe: 24.09-40-g467dd681a Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014552068 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353586091 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341883839 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.340130543 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.330463743 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.404164446 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.333553732 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.313992055 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.320373809 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.320789832 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.321184601 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009259451 seconds Ending run at 05:21:14 UTC on 2024-09-26. Run time = 3.586614578 Run time without initialization = 3.394434302 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5854 ... 3.5861 ... 3.5867 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3062 2.3278 2.3580 65.74% Gravity::make_radial_gravity() 21 0.3006 0.3107 0.3213 8.96% check_for_negative_density() 10 0.1082 0.1397 0.1572 4.38% Castro::initData() 1 0.04839 0.0868 0.1291 3.60% Castro::estTimeStep() 21 0.02876 0.07285 0.1135 3.16% amrex::Copy() 193 0.07004 0.08178 0.08985 2.51% FabArray::ParallelCopy_finish() 41 0.05528 0.07198 0.08865 2.47% FabArray::setVal() 143 0.06876 0.07172 0.07562 2.11% Castro::reset_internal_energy(Fab) 1008 0.0437 0.04725 0.05076 1.42% Castro::normalize_species() 62 0.04163 0.04568 0.05074 1.41% FabArray::ParallelCopy_nowait() 41 0.04004 0.04246 0.04468 1.25% FillPatchIterator::Initialize 41 0.02778 0.03401 0.03697 1.03% StateData::FillBoundary(geom) 41 0.03124 0.03329 0.0351 0.98% Gravity::interpolate_monopole_grav() 21 0.02872 0.02921 0.02983 0.83% Castro::construct_new_gravity_source() 10 0.02383 0.02517 0.02756 0.77% Castro::initialize_do_advance() 10 0.01313 0.01776 0.02377 0.66% Castro::computeTemp() 63 0.0201 0.02146 0.02291 0.64% FabArray::Saxpy() 20 0.01099 0.01259 0.01541 0.43% MultiFab::contains_nan() 20 0.01001 0.01248 0.01491 0.42% Castro::initialize_advance() 10 0.01221 0.01312 0.0141 0.39% VisMF::Write(FabArray) 2 0.009119 0.009889 0.01332 0.37% Amr::writePlotFile() 2 0.007721 0.01083 0.01176 0.33% FabArray::setDomainBndry() 41 0.006906 0.00978 0.01112 0.31% Castro::construct_old_gravity_source() 10 0.008834 0.009467 0.01049 0.29% Castro::initMFs() 1 0.006376 0.006962 0.007688 0.21% Castro::construct_new_source() 50 0.006205 0.006429 0.006689 0.19% main() 1 0.003234 0.003993 0.004535 0.13% Gravity::get_new_grav_vector() 11 0.002858 0.003345 0.003876 0.11% Amr::coarseTimeStep() 10 0.001644 0.002422 0.003588 0.10% Gravity::get_old_grav_vector() 10 0.001703 0.002056 0.002509 0.07% Castro::finalize_do_advance() 10 0.000425 0.0009165 0.001023 0.03% AmrLevel::FillPatch() 41 0.0007494 0.0008468 0.0009004 0.03% Amr::timeStep() 10 0.0001723 0.000249 0.0005594 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0002962 0.0003619 0.01% Castro::do_advance_ctu() 10 0.0001345 0.0001578 0.0001994 0.01% Castro::clean_state() 62 0.0001433 0.0001563 0.0001738 0.00% StateDataPhysBCFunct::() 41 0.0001144 0.0001342 0.000164 0.00% Castro::do_old_sources() 10 8.469e-05 9.948e-05 0.0001395 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001015 0.0001116 0.0001246 0.00% Amr::FinalizeInit() 1 4.029e-06 1.88e-05 0.0001182 0.00% Castro::construct_old_source() 50 6.921e-05 8.107e-05 0.0001138 0.00% FabArray::ParallelCopy() 41 9.153e-05 9.654e-05 0.0001092 0.00% FillPatchSingleLevel 41 7.331e-05 8.224e-05 9.806e-05 0.00% Castro::Castro() 1 5.945e-05 7.309e-05 8.917e-05 0.00% Castro::do_new_sources() 10 5.014e-05 6.008e-05 6.795e-05 0.00% Castro::subcycle_advance_ctu() 10 4.922e-05 5.68e-05 6.317e-05 0.00% Amr::defBaseLevel() 1 3.271e-05 5.166e-05 6.311e-05 0.00% Castro::advance() 10 4.127e-05 4.888e-05 5.95e-05 0.00% Castro::expand_state() 10 2.352e-05 3.112e-05 5.621e-05 0.00% Castro::apply_source_to_state() 20 4.2e-05 4.571e-05 5.321e-05 0.00% Castro::construct_new_gravity() 10 3.067e-05 3.539e-05 4.142e-05 0.00% Castro::construct_old_gravity() 10 3.169e-05 3.57e-05 3.908e-05 0.00% Castro::check_for_nan() 20 2.424e-05 2.954e-05 3.363e-05 0.00% Castro::post_timestep() 10 1.578e-05 1.79e-05 2.115e-05 0.00% Castro::post_init() 1 8.328e-06 1.013e-05 1.281e-05 0.00% Amr::initialInit() 1 1.504e-06 2.953e-06 1.027e-05 0.00% Castro::computeNewDt() 9 8.198e-06 8.787e-06 9.668e-06 0.00% Amr::InitializeInit() 1 2.601e-06 4.475e-06 9.443e-06 0.00% Castro::computeInitialDt() 2 3.694e-06 4.083e-06 4.612e-06 0.00% Amr::init() 1 1.996e-06 2.538e-06 2.902e-06 0.00% Other 261 0.01729 0.01934 0.02064 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.585 3.586 3.587 100.00% Amr::coarseTimeStep() 10 3.381 3.381 3.381 94.26% Amr::timeStep() 10 3.366 3.368 3.368 93.91% Castro::advance() 10 3.35 3.351 3.351 93.43% Castro::subcycle_advance_ctu() 10 3.268 3.272 3.279 91.42% Castro::do_advance_ctu() 10 3.268 3.272 3.279 91.42% Castro::construct_ctu_hydro_source() 10 2.485 2.49 2.493 69.52% Gravity::make_radial_gravity() 21 0.318 0.3264 0.3365 9.38% AmrLevel::FillPatch() 41 0.2103 0.226 0.239 6.66% Gravity::get_new_grav_vector() 11 0.2106 0.2124 0.2142 5.97% Castro::construct_old_gravity() 10 0.1933 0.202 0.212 5.91% Gravity::get_old_grav_vector() 10 0.1923 0.2012 0.2112 5.89% FillPatchIterator::Initialize 41 0.1812 0.192 0.2002 5.58% Castro::initialize_do_advance() 10 0.1702 0.1827 0.1952 5.44% Amr::init() 1 0.1917 0.1918 0.1918 5.35% Castro::construct_new_gravity() 10 0.1879 0.1895 0.1911 5.33% Amr::initialInit() 1 0.1769 0.1771 0.1772 4.94% FillPatchIterator::FillFromLevel0() 41 0.1342 0.1482 0.1613 4.50% FillPatchSingleLevel 41 0.1341 0.1481 0.1612 4.49% check_for_negative_density() 10 0.1082 0.1397 0.1572 4.38% Amr::InitializeInit() 1 0.06954 0.1072 0.1503 4.19% Amr::defBaseLevel() 1 0.06954 0.1072 0.1503 4.19% Castro::expand_state() 10 0.1175 0.1268 0.1409 3.93% Castro::initData() 1 0.05232 0.09079 0.1328 3.70% Castro::clean_state() 62 0.1142 0.1212 0.1315 3.67% FabArray::ParallelCopy() 41 0.09919 0.1146 0.1289 3.59% Castro::estTimeStep() 21 0.02876 0.07285 0.1135 3.16% Castro::do_old_sources() 10 0.1032 0.1073 0.1128 3.14% Amr::FinalizeInit() 1 0.02681 0.06987 0.1076 3.00% amrex::Copy() 193 0.07004 0.08178 0.08985 2.51% FabArray::ParallelCopy_finish() 41 0.05528 0.07198 0.08865 2.47% Castro::computeInitialDt() 2 0.002287 0.04534 0.08305 2.32% Castro::initialize_advance() 10 0.06858 0.07519 0.07966 2.22% FabArray::setVal() 143 0.06876 0.07172 0.07562 2.11% Castro::computeTemp() 63 0.06423 0.06901 0.07404 2.06% Castro::do_new_sources() 10 0.06355 0.06569 0.0684 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04399 0.04754 0.05112 1.43% Castro::reset_internal_energy(Fab) 1008 0.0437 0.04725 0.05076 1.42% Castro::normalize_species() 62 0.04163 0.04568 0.05074 1.41% FabArray::ParallelCopy_nowait() 41 0.04014 0.04256 0.04478 1.25% StateDataPhysBCFunct::() 41 0.03136 0.03342 0.03527 0.98% StateData::FillBoundary(geom) 41 0.03124 0.03329 0.0351 0.98% Castro::construct_new_source() 50 0.03003 0.0316 0.03425 0.96% Gravity::interpolate_monopole_grav() 21 0.02872 0.02921 0.02983 0.83% Castro::construct_new_gravity_source() 10 0.02383 0.02517 0.02756 0.77% Amr::writePlotFile() 2 0.02393 0.02401 0.02423 0.68% Castro::post_init() 1 0.02372 0.02387 0.02412 0.67% Castro::finalize_do_advance() 10 0.01597 0.01888 0.0219 0.61% Castro::post_timestep() 10 0.01561 0.0166 0.01788 0.50% Castro::apply_source_to_state() 20 0.01103 0.01264 0.01546 0.43% FabArray::Saxpy() 20 0.01099 0.01259 0.01541 0.43% Castro::check_for_nan() 20 0.01003 0.01251 0.01494 0.42% MultiFab::contains_nan() 20 0.01001 0.01248 0.01491 0.42% VisMF::Write(FabArray) 2 0.009119 0.009889 0.01332 0.37% Castro::Castro() 1 0.009678 0.01069 0.01155 0.32% FabArray::setDomainBndry() 41 0.006906 0.00978 0.01112 0.31% Castro::construct_old_source() 50 0.008905 0.009548 0.0106 0.30% Castro::construct_old_gravity_source() 10 0.008834 0.009467 0.01049 0.29% Castro::computeNewDt() 9 0.009534 0.009556 0.009577 0.27% Castro::initMFs() 1 0.006376 0.006962 0.007688 0.21% Other 261 0.02716 0.03014 0.0324 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8666 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6746 KiB 6753 KiB 6754 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4558 KiB 4564 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 239 KiB 259 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2802 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 232 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 50 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-40-g467dd681af11) finalized