Initializing AMReX (24.09-40-g467dd681af11)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-40-g467dd681af11) initialized Starting run at 05:21:44 UTC on 2024-09-27. Successfully read inputs file ... Castro git describe: 24.09-16-g6ea903d52 AMReX git describe: 24.09-40-g467dd681a Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014781038 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.356853762 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.355164941 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.332049413 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.395193533 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.342934124 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306897081 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307081071 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.311921973 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.311917642 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.313134257 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.08191144 seconds Ending run at 05:21:48 UTC on 2024-09-27. Run time = 3.623260281 Run time without initialization = 3.419639253 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.6226 ... 3.6231 ... 3.6233 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2472 2.3109 2.3758 65.57% Gravity::make_radial_gravity() 21 0.2937 0.3028 0.3085 8.51% check_for_negative_density() 10 0.0682 0.1328 0.1991 5.49% Castro::initData() 1 0.04906 0.08721 0.1392 3.84% Castro::estTimeStep() 21 0.03369 0.08196 0.1242 3.43% amrex::Copy() 193 0.07728 0.08212 0.08776 2.42% Amr::writePlotFile() 2 0.08166 0.08414 0.08474 2.34% FabArray::setVal() 143 0.06562 0.07335 0.08412 2.32% FabArray::ParallelCopy_finish() 41 0.0424 0.05487 0.06257 1.73% Castro::normalize_species() 62 0.04233 0.04582 0.05056 1.40% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04757 0.04994 1.38% FabArray::ParallelCopy_nowait() 41 0.03872 0.04122 0.04258 1.18% StateData::FillBoundary(geom) 41 0.03222 0.03421 0.03603 0.99% FillPatchIterator::Initialize 41 0.02986 0.03302 0.03423 0.94% Gravity::interpolate_monopole_grav() 21 0.02754 0.02906 0.02985 0.82% Castro::construct_new_gravity_source() 10 0.02377 0.02553 0.02791 0.77% Castro::computeTemp() 63 0.02072 0.02138 0.02191 0.60% Castro::initialize_do_advance() 10 0.01691 0.01827 0.02139 0.59% Castro::initialize_advance() 10 0.009978 0.01132 0.01312 0.36% FabArray::Saxpy() 20 0.0118 0.01253 0.01305 0.36% FabArray::setDomainBndry() 41 0.008875 0.01095 0.01304 0.36% VisMF::Write(FabArray) 2 0.009262 0.009754 0.01227 0.34% MultiFab::contains_nan() 20 0.009683 0.0104 0.01127 0.31% Castro::construct_old_gravity_source() 10 0.008997 0.009638 0.01016 0.28% Castro::enforce_min_density() 62 0.007189 0.007439 0.00774 0.21% Castro::construct_new_source() 50 0.005994 0.006271 0.006409 0.18% Gravity::get_new_grav_vector() 11 0.003311 0.004021 0.005537 0.15% Amr::coarseTimeStep() 10 0.002908 0.004183 0.005022 0.14% main() 1 0.003354 0.00385 0.004093 0.11% Gravity::get_old_grav_vector() 10 0.001865 0.002171 0.002583 0.07% AmrLevel::FillPatch() 41 0.0008151 0.0009644 0.001246 0.03% Castro::finalize_do_advance() 10 0.001092 0.001144 0.001241 0.03% Amr::timeStep() 10 0.0001669 0.0002214 0.0004563 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002793 0.000291 0.0003194 0.01% Castro::clean_state() 62 0.0001485 0.000178 0.0002039 0.01% Castro::do_advance_ctu() 10 0.0001336 0.0001591 0.000177 0.00% Amr::FinalizeInit() 1 3.95e-06 2.268e-05 0.0001439 0.00% FillPatchIterator::FillFromLevel0() 41 9.816e-05 0.0001139 0.000135 0.00% StateDataPhysBCFunct::() 41 9.786e-05 0.0001091 0.0001212 0.00% Castro::do_old_sources() 10 7.983e-05 9.446e-05 0.0001118 0.00% Castro::construct_old_source() 50 6.269e-05 7.98e-05 0.000107 0.00% FabArray::ParallelCopy() 41 8.848e-05 9.206e-05 9.791e-05 0.00% FillPatchSingleLevel 41 7.122e-05 8.174e-05 9.692e-05 0.00% Castro::Castro() 1 6.569e-05 8.084e-05 9.516e-05 0.00% Castro::do_new_sources() 10 4.99e-05 6.04e-05 6.773e-05 0.00% Amr::defBaseLevel() 1 4.599e-05 5.401e-05 5.982e-05 0.00% Castro::apply_source_to_state() 20 3.826e-05 4.483e-05 5.793e-05 0.00% Castro::subcycle_advance_ctu() 10 4.161e-05 4.957e-05 5.531e-05 0.00% Castro::advance() 10 4.181e-05 4.556e-05 5.12e-05 0.00% Castro::construct_old_gravity() 10 3.115e-05 3.728e-05 4.977e-05 0.00% Castro::construct_new_gravity() 10 2.804e-05 3.259e-05 3.784e-05 0.00% Castro::post_timestep() 10 1.618e-05 2.308e-05 3.456e-05 0.00% Castro::expand_state() 10 2.201e-05 2.5e-05 2.864e-05 0.00% Castro::check_for_nan() 20 2.3e-05 2.487e-05 2.815e-05 0.00% Castro::post_init() 1 7.854e-06 9.248e-06 1.194e-05 0.00% Castro::computeNewDt() 9 7.736e-06 8.658e-06 9.816e-06 0.00% Amr::init() 1 2.063e-06 3.152e-06 7.483e-06 0.00% Castro::computeInitialDt() 2 3.475e-06 4.385e-06 7.2e-06 0.00% Amr::InitializeInit() 1 2.712e-06 3.499e-06 5.974e-06 0.00% Amr::initialInit() 1 1.564e-06 1.79e-06 2.199e-06 0.00% Other 200 0.01731 0.02017 0.02129 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.623 3.623 3.623 100.00% Amr::coarseTimeStep() 10 3.334 3.334 3.334 92.01% Amr::timeStep() 10 3.319 3.319 3.321 91.65% Castro::advance() 10 3.302 3.303 3.304 91.19% Castro::subcycle_advance_ctu() 10 3.218 3.224 3.229 89.12% Castro::do_advance_ctu() 10 3.218 3.224 3.229 89.12% Castro::construct_ctu_hydro_source() 10 2.465 2.467 2.469 68.15% Gravity::make_radial_gravity() 21 0.3108 0.3199 0.3248 8.96% AmrLevel::FillPatch() 41 0.1939 0.2084 0.2207 6.09% Gravity::get_new_grav_vector() 11 0.2125 0.2148 0.217 5.99% Amr::init() 1 0.2031 0.2032 0.2032 5.61% check_for_negative_density() 10 0.0682 0.1328 0.1991 5.49% Castro::construct_old_gravity() 10 0.1894 0.193 0.1969 5.43% Gravity::get_old_grav_vector() 10 0.1887 0.1923 0.1962 5.42% Castro::construct_new_gravity() 10 0.1901 0.1921 0.1939 5.35% Amr::initialInit() 1 0.1881 0.1883 0.1884 5.20% FillPatchIterator::Initialize 41 0.1644 0.1747 0.1851 5.11% Castro::initialize_do_advance() 10 0.1658 0.1714 0.1782 4.92% Amr::InitializeInit() 1 0.07162 0.1091 0.1616 4.46% Amr::defBaseLevel() 1 0.07161 0.109 0.1616 4.46% Castro::initData() 1 0.05302 0.09109 0.1428 3.94% FillPatchIterator::FillFromLevel0() 41 0.1181 0.1308 0.1402 3.87% FillPatchSingleLevel 41 0.118 0.1307 0.1401 3.87% Castro::clean_state() 62 0.1166 0.1218 0.1265 3.49% Castro::expand_state() 10 0.1099 0.1165 0.1258 3.47% Castro::estTimeStep() 21 0.03369 0.08196 0.1242 3.43% Amr::FinalizeInit() 1 0.02679 0.07921 0.1165 3.22% FabArray::ParallelCopy() 41 0.08391 0.09627 0.1044 2.88% Castro::do_old_sources() 10 0.09268 0.09678 0.1002 2.77% Amr::writePlotFile() 2 0.09687 0.09694 0.09705 2.68% Castro::computeInitialDt() 2 0.002261 0.05475 0.09203 2.54% amrex::Copy() 193 0.07728 0.08212 0.08776 2.42% FabArray::setVal() 143 0.06562 0.07335 0.08412 2.32% Castro::initialize_advance() 10 0.06941 0.07441 0.08086 2.23% Castro::do_new_sources() 10 0.0636 0.06876 0.07369 2.03% Castro::computeTemp() 63 0.06609 0.06925 0.07186 1.98% FabArray::ParallelCopy_finish() 41 0.0424 0.05487 0.06257 1.73% Castro::normalize_species() 62 0.04233 0.04582 0.05056 1.40% Castro::reset_internal_energy(MultiFab) 63 0.04509 0.04787 0.05026 1.39% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04757 0.04994 1.38% FabArray::ParallelCopy_nowait() 41 0.03882 0.04131 0.04267 1.18% StateDataPhysBCFunct::() 41 0.03231 0.03432 0.03614 1.00% StateData::FillBoundary(geom) 41 0.03222 0.03421 0.03603 0.99% Castro::construct_new_source() 50 0.03007 0.0318 0.03425 0.95% Gravity::interpolate_monopole_grav() 21 0.02754 0.02906 0.02985 0.82% Castro::construct_new_gravity_source() 10 0.02377 0.02553 0.02791 0.77% Castro::finalize_do_advance() 10 0.01407 0.01946 0.02497 0.69% Castro::post_init() 1 0.02359 0.02394 0.02414 0.67% Castro::post_timestep() 10 0.01569 0.01665 0.01755 0.48% Castro::apply_source_to_state() 20 0.01184 0.01257 0.0131 0.36% FabArray::Saxpy() 20 0.0118 0.01253 0.01305 0.36% FabArray::setDomainBndry() 41 0.008875 0.01095 0.01304 0.36% VisMF::Write(FabArray) 2 0.009262 0.009754 0.01227 0.34% Castro::Castro() 1 0.009794 0.01146 0.01223 0.34% Castro::check_for_nan() 20 0.009706 0.01043 0.01129 0.31% MultiFab::contains_nan() 20 0.009683 0.0104 0.01127 0.31% Castro::construct_old_source() 50 0.00906 0.009718 0.01025 0.28% Castro::construct_old_gravity_source() 10 0.008997 0.009638 0.01016 0.28% Castro::computeNewDt() 9 0.008893 0.008903 0.008915 0.25% Castro::enforce_min_density() 62 0.007189 0.007439 0.00774 0.21% Other 200 0.02767 0.03211 0.03485 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6730 KiB 6736 KiB 6737 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4437 KiB 4446 KiB 4453 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 216 KiB 231 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2730 KiB 2734 KiB 2735 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 218 KiB 225 KiB 228 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 40 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-40-g467dd681af11) finalized