Initializing AMReX (24.09-45-g6d9c25b989f1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.09-45-g6d9c25b989f1) initialized Starting run at 05:22:50 UTC on 2024-10-01. Successfully read inputs file ... Castro git describe: 24.09-16-g6ea903d52 AMReX git describe: 24.09-45-g6d9c25b98 Microphysics git describe: 24.09-5-g397d3d20 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014929541 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360008511 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.350335629 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328902497 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.342382869 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.351333125 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306909906 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30778645 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.312664344 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30689879 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30846464 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007902136 seconds Ending run at 05:22:54 UTC on 2024-10-01. Run time = 3.486977666 Run time without initialization = 3.28840261 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4863 ... 3.4865 ... 3.4871 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2616 2.3069 2.3431 67.19% Gravity::make_radial_gravity() 21 0.2865 0.298 0.309 8.86% Castro::initData() 1 0.04891 0.08902 0.1321 3.79% Castro::estTimeStep() 21 0.03644 0.08469 0.1269 3.64% check_for_negative_density() 10 0.0354 0.0736 0.1195 3.43% FabArray::ParallelCopy_finish() 41 0.03895 0.05989 0.08924 2.56% amrex::Copy() 193 0.06811 0.07848 0.08723 2.50% FabArray::setVal() 143 0.0607 0.07071 0.08301 2.38% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04831 0.05155 1.48% Castro::normalize_species() 62 0.04141 0.04579 0.05092 1.46% FabArray::ParallelCopy_nowait() 41 0.03756 0.04125 0.04271 1.22% FillPatchIterator::Initialize 41 0.03067 0.03402 0.03806 1.09% StateData::FillBoundary(geom) 41 0.03184 0.03352 0.03531 1.01% Gravity::interpolate_monopole_grav() 21 0.02812 0.02905 0.02977 0.85% Castro::construct_new_gravity_source() 10 0.02298 0.02514 0.02809 0.81% Castro::computeTemp() 63 0.02118 0.02168 0.02284 0.65% Castro::initialize_do_advance() 10 0.01452 0.01857 0.02163 0.62% FabArray::Saxpy() 20 0.01142 0.01252 0.01363 0.39% MultiFab::contains_nan() 20 0.01011 0.01133 0.01308 0.38% VisMF::Write(FabArray) 2 0.009312 0.009936 0.01262 0.36% Castro::initialize_advance() 10 0.005679 0.01031 0.01257 0.36% Amr::writePlotFile() 2 0.007631 0.01096 0.01224 0.35% FabArray::setDomainBndry() 41 0.007248 0.009176 0.01026 0.29% Amr::coarseTimeStep() 10 0.00179 0.008116 0.01012 0.29% Castro::construct_old_gravity_source() 10 0.006791 0.009042 0.009938 0.29% Castro::construct_new_source() 50 0.006145 0.006684 0.00893 0.26% Castro::initMFs() 1 0.00634 0.006996 0.008072 0.23% Castro::enforce_min_density() 62 0.007002 0.007343 0.007933 0.23% main() 1 0.003636 0.00386 0.004415 0.13% Gravity::get_new_grav_vector() 11 0.002977 0.003464 0.004075 0.12% Gravity::get_old_grav_vector() 10 0.001748 0.002012 0.002398 0.07% Castro::finalize_do_advance() 10 0.0005384 0.001 0.001168 0.03% AmrLevel::FillPatch() 41 0.000735 0.0008682 0.001018 0.03% Amr::timeStep() 10 0.0001514 0.0002148 0.0004467 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.0002898 0.0003067 0.01% Castro::do_advance_ctu() 10 0.0001348 0.0001585 0.0001961 0.01% Castro::clean_state() 62 0.0001391 0.0001527 0.0001815 0.01% FillPatchIterator::FillFromLevel0() 41 9.926e-05 0.000105 0.0001279 0.00% StateDataPhysBCFunct::() 41 9.651e-05 0.000104 0.000114 0.00% Castro::do_old_sources() 10 8.281e-05 9.198e-05 0.0001035 0.00% FabArray::ParallelCopy() 41 8.273e-05 8.964e-05 9.659e-05 0.00% Castro::Castro() 1 5.603e-05 7.313e-05 9.2e-05 0.00% Castro::construct_old_source() 50 5.626e-05 7.077e-05 9.076e-05 0.00% Amr::FinalizeInit() 1 3.359e-06 1.474e-05 8.612e-05 0.00% FillPatchSingleLevel 41 7.377e-05 7.926e-05 8.43e-05 0.00% Castro::do_new_sources() 10 5.171e-05 5.864e-05 7.255e-05 0.00% Amr::defBaseLevel() 1 4.407e-05 5.694e-05 7.24e-05 0.00% Castro::computeNewDt() 9 9.137e-06 2.938e-05 6.819e-05 0.00% Castro::subcycle_advance_ctu() 10 4.282e-05 5.31e-05 5.96e-05 0.00% Castro::advance() 10 4.16e-05 4.701e-05 5.561e-05 0.00% Castro::apply_source_to_state() 20 3.804e-05 4.476e-05 5.019e-05 0.00% Castro::construct_old_gravity() 10 2.99e-05 3.553e-05 4.228e-05 0.00% Castro::construct_new_gravity() 10 2.571e-05 3.267e-05 3.76e-05 0.00% Castro::expand_state() 10 2.391e-05 2.681e-05 3.715e-05 0.00% Castro::check_for_nan() 20 2.253e-05 2.556e-05 3.007e-05 0.00% Castro::post_timestep() 10 1.451e-05 1.931e-05 2.567e-05 0.00% Castro::post_init() 1 8.997e-06 1.115e-05 1.658e-05 0.00% Amr::initialInit() 1 1.424e-06 2.649e-06 8.786e-06 0.00% Amr::init() 1 1.99e-06 3.725e-06 8.42e-06 0.00% Amr::InitializeInit() 1 2.538e-06 3.395e-06 5.481e-06 0.00% Castro::computeInitialDt() 2 3.38e-06 4.055e-06 5.007e-06 0.00% Other 199 0.01035 0.01233 0.01386 0.40% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.486 3.486 3.487 100.00% Amr::coarseTimeStep() 10 3.276 3.276 3.276 93.95% Amr::timeStep() 10 3.253 3.255 3.261 93.52% Castro::advance() 10 3.236 3.238 3.241 92.93% Castro::subcycle_advance_ctu() 10 3.151 3.16 3.169 90.88% Castro::do_advance_ctu() 10 3.151 3.16 3.169 90.88% Castro::construct_ctu_hydro_source() 10 2.4 2.402 2.405 68.96% Gravity::make_radial_gravity() 21 0.3006 0.3137 0.3227 9.26% AmrLevel::FillPatch() 41 0.1905 0.2101 0.2257 6.47% Gravity::get_new_grav_vector() 11 0.2104 0.2129 0.215 6.16% FillPatchIterator::Initialize 41 0.161 0.1783 0.1996 5.72% Amr::init() 1 0.1981 0.1982 0.1982 5.68% Castro::initialize_do_advance() 10 0.1631 0.1776 0.1959 5.62% Castro::construct_old_gravity() 10 0.1724 0.1874 0.1952 5.60% Gravity::get_old_grav_vector() 10 0.1716 0.1865 0.1941 5.57% Castro::construct_new_gravity() 10 0.1864 0.1881 0.1897 5.44% Amr::initialInit() 1 0.1819 0.1825 0.1833 5.26% FillPatchIterator::FillFromLevel0() 41 0.1164 0.1351 0.1608 4.61% FillPatchSingleLevel 41 0.1163 0.135 0.1607 4.61% Amr::InitializeInit() 1 0.06979 0.1101 0.1539 4.41% Amr::defBaseLevel() 1 0.06979 0.1101 0.1539 4.41% Castro::initData() 1 0.05253 0.09315 0.1356 3.89% Castro::clean_state() 62 0.1154 0.1226 0.1315 3.77% Castro::expand_state() 10 0.1055 0.1206 0.1298 3.72% FabArray::ParallelCopy() 41 0.08078 0.1013 0.127 3.64% Castro::estTimeStep() 21 0.03644 0.08469 0.1269 3.64% check_for_negative_density() 10 0.0354 0.0736 0.1195 3.43% Amr::FinalizeInit() 1 0.02936 0.07247 0.1132 3.25% Castro::do_old_sources() 10 0.09344 0.09623 0.09808 2.81% FabArray::ParallelCopy_finish() 41 0.03895 0.05989 0.08924 2.56% amrex::Copy() 193 0.06811 0.07848 0.08723 2.50% Castro::computeInitialDt() 2 0.00241 0.04627 0.08638 2.48% FabArray::setVal() 143 0.0607 0.07071 0.08301 2.38% Castro::initialize_advance() 10 0.06435 0.07372 0.08219 2.36% Castro::computeTemp() 63 0.06747 0.07028 0.07469 2.14% Castro::do_new_sources() 10 0.06161 0.06561 0.06997 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04629 0.0486 0.05185 1.49% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04831 0.05155 1.48% Castro::normalize_species() 62 0.04141 0.04579 0.05092 1.46% FabArray::ParallelCopy_nowait() 41 0.03769 0.04135 0.0428 1.23% Castro::construct_new_source() 50 0.02913 0.03182 0.03702 1.06% StateDataPhysBCFunct::() 41 0.03196 0.03362 0.03541 1.02% StateData::FillBoundary(geom) 41 0.03184 0.03352 0.03531 1.01% Castro::finalize_do_advance() 10 0.02276 0.02746 0.03274 0.94% Gravity::interpolate_monopole_grav() 21 0.02812 0.02905 0.02977 0.85% Castro::construct_new_gravity_source() 10 0.02298 0.02514 0.02809 0.81% Castro::post_init() 1 0.02446 0.02564 0.02669 0.77% Amr::writePlotFile() 2 0.0229 0.02366 0.02432 0.70% Castro::post_timestep() 10 0.01558 0.01691 0.02046 0.59% Castro::apply_source_to_state() 20 0.01146 0.01257 0.01367 0.39% FabArray::Saxpy() 20 0.01142 0.01252 0.01363 0.39% Castro::check_for_nan() 20 0.01013 0.01136 0.01311 0.38% MultiFab::contains_nan() 20 0.01011 0.01133 0.01308 0.38% Castro::computeNewDt() 9 0.01168 0.01199 0.01277 0.37% VisMF::Write(FabArray) 2 0.009312 0.009936 0.01262 0.36% Castro::Castro() 1 0.01007 0.01092 0.0119 0.34% FabArray::setDomainBndry() 41 0.007248 0.009176 0.01026 0.29% Castro::construct_old_source() 50 0.006847 0.009113 0.01001 0.29% Castro::construct_old_gravity_source() 10 0.006791 0.009042 0.009938 0.29% Castro::initMFs() 1 0.00634 0.006996 0.008072 0.23% Castro::enforce_min_density() 62 0.007002 0.007343 0.007933 0.23% Other 199 0.02021 0.0237 0.02787 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6723 KiB 6729 KiB 6732 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4510 KiB 4528 KiB 4541 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 229 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2780 KiB 2785 KiB 2787 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 219 KiB 229 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 45 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.09-45-g6d9c25b989f1) finalized