Initializing AMReX (24.10-1-g83497899f0a2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-1-g83497899f0a2) initialized Starting run at 05:22:04 UTC on 2024-10-02. Successfully read inputs file ... Castro git describe: 24.10 AMReX git describe: 24.10-1-g83497899f Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019458861 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.427945979 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.398732703 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.388725368 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.415853718 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.389599731 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.391131995 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.393162151 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.387481874 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.387560461 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.391763027 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.013110361 seconds Ending run at 05:22:08 UTC on 2024-10-02. Run time = 4.193787167 Run time without initialization = 3.992839131 Average number of zones advanced per microsecond: 0.657 Average number of zones advanced per microsecond per rank: 0.082 TinyProfiler total time across processes [min...avg...max]: 4.1925 ... 4.1934 ... 4.1938 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3985 2.6326 2.8869 68.84% check_for_negative_density() 10 0.008933 0.269 0.5113 12.19% Gravity::make_radial_gravity() 21 0.2981 0.3172 0.3384 8.07% amrex::Copy() 193 0.09476 0.1136 0.1293 3.08% Castro::initData() 1 0.04901 0.08686 0.1209 2.88% FabArray::setVal() 143 0.09175 0.1014 0.107 2.55% Castro::estTimeStep() 21 0.02728 0.06232 0.1045 2.49% FabArray::ParallelCopy_finish() 41 0.05617 0.06892 0.092 2.19% FabArray::ParallelCopy_nowait() 41 0.05608 0.06283 0.06744 1.61% FillPatchIterator::Initialize 41 0.04639 0.05489 0.06198 1.48% Castro::reset_internal_energy(Fab) 1008 0.04919 0.05207 0.05489 1.31% StateData::FillBoundary(geom) 41 0.03804 0.04154 0.04654 1.11% Castro::normalize_species() 62 0.04286 0.04396 0.04552 1.09% Castro::construct_new_gravity_source() 10 0.03 0.03307 0.03545 0.85% Gravity::interpolate_monopole_grav() 21 0.02735 0.02901 0.03 0.72% Castro::initialize_do_advance() 10 0.02295 0.02513 0.02766 0.66% Castro::computeTemp() 63 0.02139 0.023 0.02511 0.60% FabArray::Saxpy() 20 0.01761 0.01953 0.02069 0.49% FabArray::setDomainBndry() 41 0.01431 0.01796 0.0202 0.48% Amr::writePlotFile() 2 0.01036 0.0145 0.0184 0.44% Castro::construct_old_gravity_source() 10 0.01463 0.01593 0.01777 0.42% Castro::initialize_advance() 10 0.01527 0.01617 0.0172 0.41% VisMF::Write(FabArray) 2 0.0109 0.01304 0.01694 0.40% MultiFab::contains_nan() 20 0.01233 0.01467 0.01644 0.39% Castro::initMFs() 1 0.008338 0.009163 0.01035 0.25% Castro::construct_new_source() 50 0.007217 0.008204 0.00937 0.22% main() 1 0.005822 0.006745 0.007191 0.17% Gravity::get_new_grav_vector() 11 0.004005 0.005237 0.006181 0.15% Amr::coarseTimeStep() 10 0.001773 0.002618 0.003501 0.08% Gravity::get_old_grav_vector() 10 0.002745 0.002919 0.003241 0.08% Castro::finalize_do_advance() 10 0.001119 0.001238 0.001724 0.04% AmrLevel::FillPatch() 41 0.001008 0.001209 0.001404 0.03% Amr::timeStep() 10 0.0001686 0.0002721 0.000522 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003188 0.0003386 0.0003736 0.01% Castro::do_advance_ctu() 10 0.0001695 0.0002067 0.0002404 0.01% Castro::clean_state() 62 0.0001764 0.0002029 0.0002359 0.01% Castro::Castro() 1 8.458e-05 0.0001214 0.0001933 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001439 0.0001526 0.0001677 0.00% StateDataPhysBCFunct::() 41 0.0001283 0.000138 0.0001479 0.00% Castro::do_old_sources() 10 9.848e-05 0.000123 0.0001443 0.00% Castro::construct_old_source() 50 8.164e-05 0.0001027 0.0001392 0.00% FabArray::ParallelCopy() 41 0.0001081 0.0001217 0.000137 0.00% FillPatchSingleLevel 41 9.532e-05 0.0001121 0.0001279 0.00% Amr::FinalizeInit() 1 4.247e-06 1.721e-05 0.0001013 0.00% Castro::do_new_sources() 10 6.751e-05 7.687e-05 8.444e-05 0.00% Castro::subcycle_advance_ctu() 10 5.886e-05 7.129e-05 8.25e-05 0.00% Castro::apply_source_to_state() 20 5.516e-05 6.51e-05 7.77e-05 0.00% Amr::defBaseLevel() 1 4e-05 6.079e-05 7.003e-05 0.00% Castro::advance() 10 4.617e-05 5.739e-05 6.734e-05 0.00% Castro::construct_new_gravity() 10 3.277e-05 4.09e-05 6.087e-05 0.00% Castro::construct_old_gravity() 10 3.896e-05 4.438e-05 5.632e-05 0.00% Castro::expand_state() 10 3.568e-05 4.143e-05 5.212e-05 0.00% Castro::check_for_nan() 20 2.657e-05 3.066e-05 3.361e-05 0.00% Castro::post_timestep() 10 1.75e-05 1.975e-05 2.404e-05 0.00% Castro::post_init() 1 9.539e-06 1.064e-05 1.442e-05 0.00% Castro::computeNewDt() 9 8.19e-06 9.539e-06 1.088e-05 0.00% Amr::initialInit() 1 1.604e-06 3.044e-06 1.055e-05 0.00% Amr::InitializeInit() 1 2.685e-06 3.975e-06 9.523e-06 0.00% Castro::computeInitialDt() 2 3.954e-06 4.93e-06 6.013e-06 0.00% Amr::init() 1 2.27e-06 2.632e-06 3.092e-06 0.00% Other 261 0.02123 0.02427 0.02619 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.192 4.193 4.194 100.00% Amr::coarseTimeStep() 10 3.973 3.973 3.973 94.73% Amr::timeStep() 10 3.958 3.959 3.96 94.42% Castro::advance() 10 3.942 3.942 3.943 94.02% Castro::subcycle_advance_ctu() 10 3.833 3.838 3.846 91.71% Castro::do_advance_ctu() 10 3.833 3.838 3.846 91.70% Castro::construct_ctu_hydro_source() 10 2.92 2.925 2.932 69.91% check_for_negative_density() 10 0.008933 0.269 0.5113 12.19% Gravity::make_radial_gravity() 21 0.3205 0.3401 0.3603 8.59% AmrLevel::FillPatch() 41 0.2796 0.294 0.3108 7.41% FillPatchIterator::Initialize 41 0.2406 0.2468 0.2549 6.08% Castro::initialize_do_advance() 10 0.2188 0.2351 0.2475 5.90% Gravity::get_new_grav_vector() 11 0.2352 0.2367 0.2381 5.68% Castro::construct_old_gravity() 10 0.1947 0.2095 0.2244 5.35% Gravity::get_old_grav_vector() 10 0.1937 0.2086 0.2236 5.33% Castro::construct_new_gravity() 10 0.2066 0.2078 0.2089 4.98% Amr::init() 1 0.2004 0.2006 0.2006 4.78% FillPatchIterator::FillFromLevel0() 41 0.1626 0.1739 0.1872 4.46% FillPatchSingleLevel 41 0.1625 0.1738 0.187 4.46% Amr::initialInit() 1 0.1804 0.181 0.1811 4.32% Castro::expand_state() 10 0.1498 0.165 0.1794 4.28% FabArray::ParallelCopy() 41 0.1208 0.132 0.1483 3.54% Amr::InitializeInit() 1 0.07576 0.1149 0.148 3.53% Amr::defBaseLevel() 1 0.07575 0.1149 0.148 3.53% Castro::do_old_sources() 10 0.138 0.1401 0.1424 3.39% Castro::clean_state() 62 0.1235 0.1271 0.1312 3.13% amrex::Copy() 193 0.09476 0.1136 0.1293 3.08% Castro::initData() 1 0.05386 0.09168 0.1264 3.01% FabArray::setVal() 143 0.09175 0.1014 0.107 2.55% Amr::FinalizeInit() 1 0.03306 0.06607 0.105 2.50% Castro::initialize_advance() 10 0.09153 0.1 0.1046 2.50% Castro::estTimeStep() 21 0.02728 0.06232 0.1045 2.49% FabArray::ParallelCopy_finish() 41 0.05617 0.06892 0.092 2.19% Castro::do_new_sources() 10 0.07461 0.08051 0.08478 2.02% Castro::computeTemp() 63 0.0709 0.07542 0.08037 1.92% Castro::computeInitialDt() 2 0.002387 0.03543 0.07443 1.77% FabArray::ParallelCopy_nowait() 41 0.05621 0.06295 0.06754 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04952 0.05241 0.05527 1.32% Castro::reset_internal_energy(Fab) 1008 0.04919 0.05207 0.05489 1.31% StateDataPhysBCFunct::() 41 0.03817 0.04168 0.04668 1.11% StateData::FillBoundary(geom) 41 0.03804 0.04154 0.04654 1.11% Castro::normalize_species() 62 0.04286 0.04396 0.04552 1.09% Castro::construct_new_source() 50 0.03754 0.04128 0.04482 1.07% Castro::construct_new_gravity_source() 10 0.03 0.03307 0.03545 0.85% Amr::writePlotFile() 2 0.03267 0.03281 0.03342 0.80% Castro::post_init() 1 0.02952 0.03017 0.03038 0.72% Gravity::interpolate_monopole_grav() 21 0.02735 0.02901 0.03 0.72% Castro::finalize_do_advance() 10 0.0126 0.01856 0.02617 0.62% Castro::apply_source_to_state() 20 0.01767 0.0196 0.02075 0.49% FabArray::Saxpy() 20 0.01761 0.01953 0.02069 0.49% FabArray::setDomainBndry() 41 0.01431 0.01796 0.0202 0.48% Castro::construct_old_source() 50 0.01472 0.01604 0.01791 0.43% Castro::construct_old_gravity_source() 10 0.01463 0.01593 0.01777 0.42% Castro::post_timestep() 10 0.01585 0.01639 0.01699 0.41% VisMF::Write(FabArray) 2 0.0109 0.01304 0.01694 0.40% Castro::Castro() 1 0.01389 0.01557 0.01693 0.40% Castro::check_for_nan() 20 0.01236 0.0147 0.01647 0.39% MultiFab::contains_nan() 20 0.01233 0.01467 0.01644 0.39% Castro::initMFs() 1 0.008338 0.009163 0.01035 0.25% Castro::computeNewDt() 9 0.009564 0.00958 0.009601 0.23% Other 261 0.0342 0.03833 0.04127 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 29 B 31 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8668 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6785 KiB 6790 KiB 6793 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4567 KiB 4572 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 249 KiB 266 KiB 285 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 20 KiB 24 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2820 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 194 KiB 206 KiB 219 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 48 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 72 KiB 72 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 59 KiB 63 KiB 68 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-1-g83497899f0a2) finalized