Initializing AMReX (24.10-2-gf3514e408aaa)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-2-gf3514e408aaa) initialized Starting run at 05:26:13 UTC on 2024-10-03. Successfully read inputs file ... Castro git describe: 24.10 AMReX git describe: 24.10-2-gf3514e408 Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016627452 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360602372 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.350337658 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327110798 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.354629328 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.34232478 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306995474 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.306358382 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307022287 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308580508 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307006517 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007696612 seconds Ending run at 05:26:16 UTC on 2024-10-03. Run time = 3.514293498 Run time without initialization = 3.287892911 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.5137 ... 3.5141 ... 3.5143 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2446 2.3010 2.3538 66.98% Gravity::make_radial_gravity() 21 0.3001 0.3053 0.316 8.99% Castro::initData() 1 0.04912 0.09217 0.1499 4.27% Castro::estTimeStep() 21 0.04705 0.1015 0.1479 4.21% check_for_negative_density() 10 0.03041 0.08629 0.1415 4.03% amrex::Copy() 193 0.06722 0.07732 0.08457 2.41% FabArray::setVal() 143 0.06362 0.07247 0.08175 2.33% FabArray::ParallelCopy_finish() 41 0.04139 0.05754 0.0674 1.92% Castro::reset_internal_energy(Fab) 1008 0.04537 0.04713 0.04843 1.38% Castro::normalize_species() 62 0.04203 0.0426 0.04371 1.24% FabArray::ParallelCopy_nowait() 41 0.03454 0.03945 0.04119 1.17% StateData::FillBoundary(geom) 41 0.0317 0.03362 0.03588 1.02% FillPatchIterator::Initialize 41 0.02957 0.0328 0.03581 1.02% Gravity::interpolate_monopole_grav() 21 0.02757 0.02959 0.03096 0.88% Castro::construct_new_gravity_source() 10 0.02217 0.02559 0.03037 0.86% Castro::computeTemp() 63 0.02039 0.0209 0.02161 0.61% Castro::initialize_do_advance() 10 0.01416 0.01787 0.02078 0.59% FabArray::Saxpy() 20 0.01033 0.01274 0.01734 0.49% VisMF::Write(FabArray) 2 0.009449 0.01039 0.01382 0.39% Castro::initialize_advance() 10 0.009818 0.01168 0.01362 0.39% Amr::writePlotFile() 2 0.007931 0.01148 0.01259 0.36% MultiFab::contains_nan() 20 0.01049 0.0112 0.01222 0.35% FabArray::setDomainBndry() 41 0.007298 0.009767 0.01175 0.33% Castro::initMFs() 1 0.00636 0.007886 0.01116 0.32% Castro::construct_old_gravity_source() 10 0.006631 0.008736 0.009334 0.27% Amr::coarseTimeStep() 10 0.005879 0.006857 0.008205 0.23% Castro::construct_new_source() 50 0.005506 0.005841 0.006048 0.17% main() 1 0.003882 0.004223 0.00451 0.13% Gravity::get_new_grav_vector() 11 0.003164 0.003554 0.004188 0.12% Gravity::get_old_grav_vector() 10 0.001549 0.001998 0.002393 0.07% Castro::finalize_do_advance() 10 0.0004977 0.001062 0.001521 0.04% AmrLevel::FillPatch() 41 0.0007689 0.001007 0.001192 0.03% Amr::timeStep() 10 0.000176 0.0002306 0.0005124 0.01% Castro::Castro() 1 5.492e-05 0.0001011 0.0003558 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000275 0.0002873 0.0003036 0.01% Castro::do_advance_ctu() 10 0.0001349 0.0001702 0.0002117 0.01% Castro::clean_state() 62 0.0001381 0.0001593 0.0001852 0.01% Amr::defBaseLevel() 1 4.92e-05 7.582e-05 0.0001845 0.01% FillPatchIterator::FillFromLevel0() 41 9.618e-05 0.0001067 0.000122 0.00% StateDataPhysBCFunct::() 41 8.922e-05 0.0001024 0.000116 0.00% Castro::do_old_sources() 10 7.218e-05 8.902e-05 0.0001038 0.00% FabArray::ParallelCopy() 41 8.598e-05 9.409e-05 9.873e-05 0.00% Amr::FinalizeInit() 1 3.763e-06 1.612e-05 9.174e-05 0.00% Castro::apply_source_to_state() 20 3.35e-05 4.627e-05 8.805e-05 0.00% FillPatchSingleLevel 41 7.289e-05 7.986e-05 8.724e-05 0.00% Castro::construct_old_source() 50 5.576e-05 6.918e-05 8.657e-05 0.00% Castro::subcycle_advance_ctu() 10 4.377e-05 5.489e-05 6.8e-05 0.00% Castro::do_new_sources() 10 5.315e-05 5.77e-05 6.286e-05 0.00% Castro::computeNewDt() 9 8.561e-06 1.638e-05 6.042e-05 0.00% Castro::advance() 10 4.013e-05 4.736e-05 5.491e-05 0.00% Castro::construct_old_gravity() 10 3.379e-05 3.777e-05 4.222e-05 0.00% Castro::construct_new_gravity() 10 3.21e-05 3.525e-05 3.891e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.537e-06 1.45e-05 3.001e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.605e-05 2.809e-05 0.00% Castro::expand_state() 10 2.268e-05 2.492e-05 2.733e-05 0.00% Castro::post_timestep() 10 1.86e-05 2.1e-05 2.436e-05 0.00% Castro::post_init() 1 8.853e-06 1.097e-05 1.463e-05 0.00% Amr::InitializeInit() 1 2.685e-06 3.982e-06 6.861e-06 0.00% Castro::computeInitialDt() 2 3.342e-06 4.074e-06 4.615e-06 0.00% Amr::init() 1 2.413e-06 2.594e-06 2.852e-06 0.00% Amr::initialInit() 1 1.348e-06 1.656e-06 1.881e-06 0.00% Other 260 0.01731 0.02043 0.02528 0.72% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.514 3.514 3.514 100.00% Amr::coarseTimeStep() 10 3.276 3.276 3.276 93.21% Amr::timeStep() 10 3.255 3.256 3.257 92.67% Castro::advance() 10 3.238 3.239 3.24 92.20% Castro::subcycle_advance_ctu() 10 3.153 3.16 3.167 90.11% Castro::do_advance_ctu() 10 3.153 3.16 3.167 90.11% Castro::construct_ctu_hydro_source() 10 2.406 2.409 2.411 68.62% Gravity::make_radial_gravity() 21 0.316 0.3216 0.3305 9.41% Amr::init() 1 0.2258 0.226 0.226 6.43% Gravity::get_new_grav_vector() 11 0.221 0.2225 0.2242 6.38% AmrLevel::FillPatch() 41 0.1879 0.2049 0.2183 6.21% Amr::initialInit() 1 0.2088 0.209 0.2093 5.95% Castro::construct_new_gravity() 10 0.1951 0.1965 0.1978 5.63% Castro::construct_old_gravity() 10 0.1848 0.1888 0.1968 5.60% Gravity::get_old_grav_vector() 10 0.1841 0.1879 0.1957 5.57% FillPatchIterator::Initialize 41 0.1587 0.1736 0.1852 5.27% Amr::InitializeInit() 1 0.06859 0.1143 0.179 5.09% Amr::defBaseLevel() 1 0.06858 0.1143 0.179 5.09% Castro::initialize_do_advance() 10 0.1542 0.169 0.1781 5.07% Castro::initData() 1 0.05305 0.09591 0.1537 4.37% Castro::estTimeStep() 21 0.04705 0.1015 0.1479 4.21% check_for_negative_density() 10 0.03041 0.08629 0.1415 4.03% FillPatchIterator::FillFromLevel0() 41 0.1182 0.1311 0.1408 4.01% FillPatchSingleLevel 41 0.1181 0.131 0.1407 4.00% Amr::FinalizeInit() 1 0.03014 0.0947 0.1404 4.00% Castro::expand_state() 10 0.1038 0.114 0.1243 3.54% Castro::clean_state() 62 0.1148 0.1175 0.1205 3.43% Castro::computeInitialDt() 2 0.002442 0.06722 0.1128 3.21% FabArray::ParallelCopy() 41 0.08275 0.09717 0.1077 3.06% Castro::do_old_sources() 10 0.08697 0.0914 0.0943 2.68% amrex::Copy() 193 0.06722 0.07732 0.08457 2.41% Castro::initialize_advance() 10 0.06869 0.07567 0.08236 2.34% FabArray::setVal() 143 0.06362 0.07247 0.08175 2.33% Castro::do_new_sources() 10 0.05679 0.06687 0.07797 2.22% Castro::computeTemp() 63 0.06603 0.06832 0.07031 2.00% FabArray::ParallelCopy_finish() 41 0.04139 0.05754 0.0674 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04565 0.04742 0.04871 1.39% Castro::reset_internal_energy(Fab) 1008 0.04537 0.04713 0.04843 1.38% Castro::normalize_species() 62 0.04203 0.0426 0.04371 1.24% FabArray::ParallelCopy_nowait() 41 0.03464 0.03954 0.04128 1.17% Castro::construct_new_source() 50 0.02798 0.03143 0.03642 1.04% StateDataPhysBCFunct::() 41 0.0318 0.03372 0.03598 1.02% StateData::FillBoundary(geom) 41 0.0317 0.03362 0.03588 1.02% Castro::finalize_do_advance() 10 0.01234 0.02358 0.03338 0.95% Gravity::interpolate_monopole_grav() 21 0.02757 0.02959 0.03096 0.88% Castro::construct_new_gravity_source() 10 0.02217 0.02559 0.03037 0.86% Castro::post_init() 1 0.02683 0.02695 0.02712 0.77% Amr::writePlotFile() 2 0.02453 0.02476 0.02502 0.71% Castro::apply_source_to_state() 20 0.01036 0.01279 0.01742 0.50% FabArray::Saxpy() 20 0.01033 0.01274 0.01734 0.49% Castro::post_timestep() 10 0.01586 0.01626 0.01722 0.49% Castro::Castro() 1 0.009805 0.01164 0.01585 0.45% VisMF::Write(FabArray) 2 0.009449 0.01039 0.01382 0.39% Castro::check_for_nan() 20 0.01051 0.01123 0.01225 0.35% MultiFab::contains_nan() 20 0.01049 0.0112 0.01222 0.35% Castro::computeNewDt() 9 0.01179 0.01181 0.01182 0.34% FabArray::setDomainBndry() 41 0.007298 0.009767 0.01175 0.33% Castro::initMFs() 1 0.00636 0.007886 0.01116 0.32% Castro::construct_old_source() 50 0.006689 0.008805 0.009409 0.27% Castro::construct_old_gravity_source() 10 0.006631 0.008736 0.009334 0.27% AmrLevel::AmrLevel(dm) 1 0.005385 0.006505 0.009318 0.27% Other 260 0.02189 0.02597 0.03202 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 42 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6668 KiB 6675 KiB 6678 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4483 KiB 4492 KiB 4501 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 198 KiB 217 KiB 232 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2761 KiB 2764 KiB 2766 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 233 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 41 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-2-gf3514e408aaa) finalized