Initializing AMReX (24.10-4-g49245d638474)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-4-g49245d638474) initialized Starting run at 05:39:16 UTC on 2024-10-04. Successfully read inputs file ... Castro git describe: 24.10 AMReX git describe: 24.10-4-g49245d638 Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014376853 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350810237 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330092778 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.324792075 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.354993211 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.382365324 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312076463 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305959403 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305888212 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305654767 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.327895268 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.044616244 seconds Ending run at 05:39:20 UTC on 2024-10-04. Run time = 3.556676231 Run time without initialization = 3.350617098 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5551 ... 3.5560 ... 3.5567 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2746 2.3101 2.3594 66.34% Gravity::make_radial_gravity() 21 0.2937 0.3143 0.3378 9.50% check_for_negative_density() 10 0.06287 0.1132 0.1505 4.23% Castro::initData() 1 0.04763 0.09018 0.1434 4.03% Castro::estTimeStep() 21 0.03214 0.08473 0.131 3.68% amrex::Copy() 193 0.06539 0.0809 0.09636 2.71% FabArray::ParallelCopy_finish() 41 0.04286 0.05486 0.08608 2.42% FabArray::setVal() 143 0.05396 0.06465 0.07164 2.01% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04657 0.04905 1.38% Amr::writePlotFile() 2 0.04372 0.04679 0.04873 1.37% Castro::normalize_species() 62 0.0419 0.04356 0.04807 1.35% FabArray::ParallelCopy_nowait() 41 0.03467 0.03976 0.04189 1.18% StateData::FillBoundary(geom) 41 0.03155 0.03515 0.04016 1.13% FillPatchIterator::Initialize 41 0.02761 0.03152 0.03397 0.96% Gravity::interpolate_monopole_grav() 21 0.02752 0.02925 0.02986 0.84% Castro::construct_new_gravity_source() 10 0.02238 0.02382 0.02621 0.74% Castro::computeTemp() 63 0.02006 0.02064 0.02177 0.61% Castro::initialize_do_advance() 10 0.0114 0.01541 0.01643 0.46% MultiFab::contains_nan() 20 0.01092 0.01203 0.01466 0.41% Castro::initialize_advance() 10 0.005272 0.01036 0.01322 0.37% FabArray::Saxpy() 20 0.009855 0.01184 0.01282 0.36% VisMF::Write(FabArray) 2 0.009087 0.009839 0.01267 0.36% FabArray::setDomainBndry() 41 0.00693 0.009964 0.01238 0.35% Castro::construct_old_gravity_source() 10 0.006019 0.008446 0.008993 0.25% Castro::initMFs() 1 0.006412 0.006997 0.00805 0.23% Castro::construct_new_source() 50 0.005462 0.006049 0.006427 0.18% main() 1 0.003439 0.004319 0.005072 0.14% Gravity::get_new_grav_vector() 11 0.002834 0.003427 0.003818 0.11% Amr::coarseTimeStep() 10 0.001043 0.002099 0.002809 0.08% Gravity::get_old_grav_vector() 10 0.001685 0.002215 0.002536 0.07% Castro::finalize_do_advance() 10 0.0004772 0.00106 0.001643 0.05% AmrLevel::FillPatch() 41 0.0007302 0.001032 0.001448 0.04% Amr::timeStep() 10 0.000165 0.0002237 0.0004117 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002802 0.0002949 0.0003098 0.01% Castro::do_advance_ctu() 10 0.000137 0.0001634 0.0001885 0.01% Castro::clean_state() 62 0.0001387 0.0001604 0.0001759 0.00% StateDataPhysBCFunct::() 41 8.948e-05 0.0001186 0.0001538 0.00% FillPatchIterator::FillFromLevel0() 41 9.866e-05 0.0001224 0.0001489 0.00% Castro::do_old_sources() 10 8.114e-05 9.191e-05 0.0001243 0.00% FabArray::ParallelCopy() 41 9.028e-05 9.518e-05 0.0001006 0.00% Castro::Castro() 1 5.77e-05 7.051e-05 9.628e-05 0.00% FillPatchSingleLevel 41 7.284e-05 8.223e-05 9.181e-05 0.00% Castro::construct_old_source() 50 5.327e-05 7.021e-05 8.619e-05 0.00% Amr::FinalizeInit() 1 3.581e-06 1.343e-05 7.357e-05 0.00% Castro::do_new_sources() 10 4.77e-05 5.952e-05 6.793e-05 0.00% Amr::defBaseLevel() 1 3.544e-05 5.517e-05 6.737e-05 0.00% Castro::subcycle_advance_ctu() 10 4.402e-05 5.416e-05 5.936e-05 0.00% Castro::advance() 10 3.885e-05 4.751e-05 5.76e-05 0.00% Castro::construct_old_gravity() 10 3.193e-05 4.187e-05 5.144e-05 0.00% Castro::apply_source_to_state() 20 4.034e-05 4.678e-05 5.037e-05 0.00% Castro::construct_new_gravity() 10 3.16e-05 3.412e-05 3.705e-05 0.00% Castro::expand_state() 10 2.015e-05 2.587e-05 3.205e-05 0.00% Castro::check_for_nan() 20 2.548e-05 2.741e-05 3.147e-05 0.00% Castro::post_timestep() 10 1.528e-05 1.745e-05 2.105e-05 0.00% Amr::initialInit() 1 1.155e-06 3.984e-06 1.95e-05 0.00% Castro::post_init() 1 8.615e-06 9.848e-06 1.255e-05 0.00% Castro::computeNewDt() 9 7.959e-06 8.813e-06 9.827e-06 0.00% Amr::InitializeInit() 1 2.33e-06 3.877e-06 8.727e-06 0.00% Castro::computeInitialDt() 2 2.643e-06 3.648e-06 4.01e-06 0.00% Amr::init() 1 1.782e-06 2.198e-06 3.161e-06 0.00% Other 261 0.01688 0.01901 0.02068 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.555 3.556 3.557 100.00% Amr::coarseTimeStep() 10 3.301 3.301 3.301 92.81% Amr::timeStep() 10 3.288 3.289 3.29 92.49% Castro::advance() 10 3.272 3.272 3.273 92.02% Castro::subcycle_advance_ctu() 10 3.198 3.203 3.218 90.46% Castro::do_advance_ctu() 10 3.198 3.203 3.217 90.46% Castro::construct_ctu_hydro_source() 10 2.44 2.445 2.447 68.80% Gravity::make_radial_gravity() 21 0.3106 0.3303 0.3501 9.84% Castro::construct_old_gravity() 10 0.1873 0.206 0.2242 6.30% Gravity::get_old_grav_vector() 10 0.1863 0.2052 0.2236 6.29% AmrLevel::FillPatch() 41 0.197 0.2066 0.2147 6.04% Gravity::get_new_grav_vector() 11 0.2089 0.2101 0.211 5.93% Amr::init() 1 0.2055 0.2057 0.2057 5.78% Amr::initialInit() 1 0.1905 0.191 0.1912 5.37% FillPatchIterator::Initialize 41 0.1649 0.1718 0.1882 5.29% Castro::construct_new_gravity() 10 0.187 0.1877 0.1882 5.29% Castro::initialize_do_advance() 10 0.1541 0.1703 0.1837 5.16% Amr::InitializeInit() 1 0.0671 0.1105 0.1649 4.64% Amr::defBaseLevel() 1 0.06709 0.1105 0.1649 4.64% FillPatchIterator::FillFromLevel0() 41 0.1229 0.1303 0.1537 4.32% FillPatchSingleLevel 41 0.1228 0.1302 0.1536 4.32% check_for_negative_density() 10 0.06287 0.1132 0.1505 4.23% Castro::initData() 1 0.05147 0.09391 0.1471 4.14% Castro::estTimeStep() 21 0.03214 0.08473 0.131 3.68% Castro::expand_state() 10 0.1007 0.1156 0.128 3.60% Amr::FinalizeInit() 1 0.02556 0.0805 0.1241 3.49% Castro::clean_state() 62 0.1143 0.1176 0.1213 3.41% FabArray::ParallelCopy() 41 0.08304 0.09481 0.121 3.40% Castro::do_old_sources() 10 0.09395 0.09629 0.1002 2.82% Castro::computeInitialDt() 2 0.002123 0.05661 0.1001 2.81% amrex::Copy() 193 0.06539 0.0809 0.09636 2.71% FabArray::ParallelCopy_finish() 41 0.04286 0.05486 0.08608 2.42% FabArray::setVal() 143 0.05396 0.06465 0.07164 2.01% Castro::computeTemp() 63 0.06613 0.0675 0.07111 2.00% Castro::initialize_advance() 10 0.05096 0.06621 0.07109 2.00% Castro::do_new_sources() 10 0.05709 0.06242 0.06699 1.88% Amr::writePlotFile() 2 0.05921 0.05934 0.05979 1.68% Castro::reset_internal_energy(MultiFab) 63 0.04574 0.04687 0.04934 1.39% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04657 0.04905 1.38% Castro::normalize_species() 62 0.0419 0.04356 0.04807 1.35% FabArray::ParallelCopy_nowait() 41 0.03479 0.03986 0.04197 1.18% StateDataPhysBCFunct::() 41 0.03171 0.03527 0.04029 1.13% StateData::FillBoundary(geom) 41 0.03155 0.03515 0.04016 1.13% Castro::construct_new_source() 50 0.02784 0.02987 0.03223 0.91% Gravity::interpolate_monopole_grav() 21 0.02752 0.02925 0.02986 0.84% Castro::construct_new_gravity_source() 10 0.02238 0.02382 0.02621 0.74% Castro::finalize_do_advance() 10 0.01568 0.01986 0.02462 0.69% Castro::post_init() 1 0.02317 0.02346 0.02355 0.66% Castro::post_timestep() 10 0.01546 0.01603 0.01684 0.47% Castro::check_for_nan() 20 0.01095 0.01206 0.01468 0.41% MultiFab::contains_nan() 20 0.01092 0.01203 0.01466 0.41% Castro::apply_source_to_state() 20 0.009904 0.01189 0.01286 0.36% FabArray::Saxpy() 20 0.009855 0.01184 0.01282 0.36% VisMF::Write(FabArray) 2 0.009087 0.009839 0.01267 0.36% FabArray::setDomainBndry() 41 0.00693 0.009964 0.01238 0.35% Castro::Castro() 1 0.0101 0.01076 0.01165 0.33% Castro::computeNewDt() 9 0.009324 0.009334 0.009349 0.26% Castro::construct_old_source() 50 0.006072 0.008516 0.009079 0.26% Castro::construct_old_gravity_source() 10 0.006019 0.008446 0.008993 0.25% Castro::initMFs() 1 0.006412 0.006997 0.00805 0.23% Other 261 0.02667 0.02955 0.03205 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6716 KiB 6722 KiB 6726 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4492 KiB 4499 KiB 4521 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 219 KiB 234 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2757 KiB 2759 KiB 2760 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 236 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 74 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-4-g49245d638474) finalized