Initializing AMReX (24.10-5-g6239d2576489)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-5-g6239d2576489) initialized Starting run at 05:39:33 UTC on 2024-10-07. Successfully read inputs file ... Castro git describe: 24.10 AMReX git describe: 24.10-5-g6239d2576 Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014953223 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341569625 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329253156 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.32742982 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.329628827 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.399040609 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.321221626 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.310414769 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.311202198 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310647994 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.312082074 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00843388 seconds Ending run at 05:39:36 UTC on 2024-10-07. Run time = 3.494158059 Run time without initialization = 3.306382246 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4934 ... 3.4937 ... 3.4943 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2340 2.3220 2.3644 67.66% Gravity::make_radial_gravity() 21 0.2919 0.302 0.3255 9.32% check_for_negative_density() 10 0.06173 0.1038 0.1981 5.67% Castro::initData() 1 0.04878 0.0877 0.1234 3.53% Castro::estTimeStep() 21 0.03033 0.06421 0.1038 2.97% FabArray::ParallelCopy_finish() 41 0.04206 0.05443 0.09941 2.84% amrex::Copy() 193 0.06135 0.08197 0.08711 2.49% FabArray::setVal() 143 0.05116 0.06345 0.06966 1.99% Castro::reset_internal_energy(Fab) 1008 0.04555 0.04733 0.04855 1.39% FabArray::ParallelCopy_nowait() 41 0.03411 0.04148 0.04483 1.28% Castro::normalize_species() 62 0.04105 0.0422 0.04361 1.25% StateData::FillBoundary(geom) 41 0.03153 0.0351 0.0388 1.11% FillPatchIterator::Initialize 41 0.02659 0.03375 0.03708 1.06% Gravity::interpolate_monopole_grav() 21 0.02822 0.02927 0.03034 0.87% Castro::construct_new_gravity_source() 10 0.02363 0.02512 0.02762 0.79% Castro::computeTemp() 63 0.01995 0.02102 0.02189 0.63% Castro::initialize_do_advance() 10 0.0107 0.01621 0.01877 0.54% Castro::initialize_advance() 10 0.005295 0.01034 0.0139 0.40% FabArray::Saxpy() 20 0.009853 0.01254 0.01371 0.39% Amr::writePlotFile() 2 0.008293 0.01148 0.01257 0.36% VisMF::Write(FabArray) 2 0.009326 0.009847 0.01253 0.36% FabArray::setDomainBndry() 41 0.006581 0.0105 0.01177 0.34% MultiFab::contains_nan() 20 0.009724 0.01027 0.0112 0.32% Castro::construct_old_gravity_source() 10 0.006377 0.009222 0.01021 0.29% Castro::initMFs() 1 0.006678 0.007077 0.008125 0.23% Castro::construct_new_source() 50 0.005354 0.006285 0.006578 0.19% main() 1 0.003779 0.004132 0.004657 0.13% Gravity::get_new_grav_vector() 11 0.002748 0.003742 0.00448 0.13% Gravity::get_old_grav_vector() 10 0.00149 0.002178 0.002779 0.08% Amr::coarseTimeStep() 10 0.0009565 0.001787 0.002693 0.08% Castro::finalize_do_advance() 10 0.0004752 0.0009882 0.001083 0.03% AmrLevel::FillPatch() 41 0.0007863 0.0009274 0.0009988 0.03% Amr::timeStep() 10 0.0001794 0.0002306 0.0004122 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002811 0.0002917 0.000312 0.01% Castro::do_advance_ctu() 10 0.0001267 0.0001514 0.0001731 0.00% Castro::clean_state() 62 0.0001354 0.0001533 0.0001647 0.00% FillPatchIterator::FillFromLevel0() 41 9.718e-05 0.0001117 0.0001362 0.00% StateDataPhysBCFunct::() 41 0.0001056 0.0001203 0.000136 0.00% Castro::Castro() 1 6.078e-05 8.601e-05 0.0001179 0.00% FabArray::ParallelCopy() 41 8.585e-05 9.558e-05 0.000111 0.00% Castro::do_old_sources() 10 7.933e-05 9.123e-05 0.0001099 0.00% Castro::construct_old_source() 50 5.781e-05 7.082e-05 8.777e-05 0.00% FillPatchSingleLevel 41 7.249e-05 7.976e-05 8.484e-05 0.00% Amr::FinalizeInit() 1 3.638e-06 1.341e-05 7.523e-05 0.00% Castro::do_new_sources() 10 4.996e-05 5.938e-05 7.058e-05 0.00% Castro::apply_source_to_state() 20 4.098e-05 4.962e-05 5.733e-05 0.00% Castro::subcycle_advance_ctu() 10 4.2e-05 4.961e-05 5.703e-05 0.00% Amr::defBaseLevel() 1 4.403e-05 4.983e-05 5.574e-05 0.00% Castro::advance() 10 4.123e-05 4.541e-05 5.315e-05 0.00% Castro::construct_new_gravity() 10 2.936e-05 3.374e-05 4.037e-05 0.00% Castro::construct_old_gravity() 10 3.186e-05 3.607e-05 3.987e-05 0.00% Castro::expand_state() 10 1.98e-05 2.471e-05 3.286e-05 0.00% Castro::check_for_nan() 20 2.396e-05 2.621e-05 2.93e-05 0.00% Castro::post_timestep() 10 1.478e-05 1.666e-05 1.843e-05 0.00% Castro::post_init() 1 8.833e-06 1.072e-05 1.531e-05 0.00% Castro::computeNewDt() 9 8.473e-06 9.195e-06 1.005e-05 0.00% Amr::InitializeInit() 1 2.673e-06 3.414e-06 6.032e-06 0.00% Castro::computeInitialDt() 2 3.401e-06 4.121e-06 4.666e-06 0.00% Amr::init() 1 1.66e-06 2.275e-06 2.833e-06 0.00% Amr::initialInit() 1 1.398e-06 1.725e-06 2.156e-06 0.00% Other 261 0.0172 0.01944 0.02093 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.493 3.494 3.494 100.00% Amr::coarseTimeStep() 10 3.293 3.293 3.293 94.25% Amr::timeStep() 10 3.28 3.281 3.282 93.93% Castro::advance() 10 3.264 3.265 3.265 93.44% Castro::subcycle_advance_ctu() 10 3.191 3.196 3.211 91.90% Castro::do_advance_ctu() 10 3.191 3.196 3.211 91.90% Castro::construct_ctu_hydro_source() 10 2.44 2.447 2.452 70.18% Gravity::make_radial_gravity() 21 0.3097 0.3192 0.3381 9.67% AmrLevel::FillPatch() 41 0.2026 0.2096 0.2204 6.31% Gravity::get_new_grav_vector() 11 0.2127 0.214 0.215 6.15% Castro::construct_old_gravity() 10 0.1843 0.1917 0.2075 5.94% Gravity::get_old_grav_vector() 10 0.1837 0.1911 0.2068 5.92% FillPatchIterator::Initialize 41 0.1695 0.1758 0.1987 5.69% check_for_negative_density() 10 0.06173 0.1038 0.1981 5.67% Castro::construct_new_gravity() 10 0.19 0.1905 0.1914 5.48% Amr::init() 1 0.1872 0.1874 0.1874 5.36% Castro::initialize_do_advance() 10 0.1647 0.1694 0.1725 4.94% Amr::initialInit() 1 0.1713 0.1718 0.1724 4.93% FillPatchIterator::FillFromLevel0() 41 0.1209 0.1315 0.1655 4.74% FillPatchSingleLevel 41 0.1208 0.1314 0.1654 4.73% Amr::InitializeInit() 1 0.06979 0.1089 0.1442 4.13% Amr::defBaseLevel() 1 0.06979 0.1089 0.1442 4.13% FabArray::ParallelCopy() 41 0.08601 0.0961 0.1337 3.83% Castro::initData() 1 0.05267 0.09169 0.1275 3.65% Castro::expand_state() 10 0.1123 0.1161 0.1227 3.51% Castro::clean_state() 62 0.113 0.1174 0.1205 3.45% Castro::do_old_sources() 10 0.09427 0.09835 0.1042 2.98% Castro::estTimeStep() 21 0.03033 0.06421 0.1038 2.97% Amr::FinalizeInit() 1 0.02782 0.06287 0.1016 2.91% FabArray::ParallelCopy_finish() 41 0.04206 0.05443 0.09941 2.84% amrex::Copy() 193 0.06135 0.08197 0.08711 2.49% Castro::computeInitialDt() 2 0.002263 0.03751 0.07668 2.19% Castro::do_new_sources() 10 0.05845 0.0648 0.07095 2.03% Castro::initialize_advance() 10 0.0499 0.06571 0.07057 2.02% Castro::computeTemp() 63 0.06579 0.06865 0.07037 2.01% FabArray::setVal() 143 0.05116 0.06345 0.06966 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04584 0.04762 0.04883 1.40% Castro::reset_internal_energy(Fab) 1008 0.04555 0.04733 0.04855 1.39% FabArray::ParallelCopy_nowait() 41 0.03422 0.04158 0.04492 1.29% Castro::normalize_species() 62 0.04105 0.0422 0.04361 1.25% StateDataPhysBCFunct::() 41 0.03164 0.03522 0.03892 1.11% StateData::FillBoundary(geom) 41 0.03153 0.0351 0.0388 1.11% Castro::construct_new_source() 50 0.02899 0.0314 0.03413 0.98% Gravity::interpolate_monopole_grav() 21 0.02822 0.02927 0.03034 0.87% Castro::construct_new_gravity_source() 10 0.02363 0.02512 0.02762 0.79% Castro::post_init() 1 0.02431 0.02483 0.0255 0.73% Castro::finalize_do_advance() 10 0.01259 0.01859 0.02489 0.71% Amr::writePlotFile() 2 0.02357 0.02413 0.02463 0.70% Castro::post_timestep() 10 0.0158 0.01616 0.01664 0.48% Castro::apply_source_to_state() 20 0.009897 0.01259 0.01377 0.39% FabArray::Saxpy() 20 0.009853 0.01254 0.01371 0.39% VisMF::Write(FabArray) 2 0.009326 0.009847 0.01253 0.36% Castro::Castro() 1 0.0107 0.01123 0.01208 0.35% FabArray::setDomainBndry() 41 0.006581 0.0105 0.01177 0.34% Castro::check_for_nan() 20 0.009752 0.0103 0.01122 0.32% MultiFab::contains_nan() 20 0.009724 0.01027 0.0112 0.32% Castro::construct_old_source() 50 0.006434 0.009293 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.006377 0.009222 0.01021 0.29% Castro::computeNewDt() 9 0.009102 0.009118 0.009129 0.26% Castro::initMFs() 1 0.006678 0.007077 0.008125 0.23% Other 261 0.02726 0.03038 0.03256 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6747 KiB 6752 KiB 6755 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4557 KiB 4569 KiB 4592 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 226 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2802 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 232 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 70 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-5-g6239d2576489) finalized