Initializing AMReX (24.10-6-ge1222803739e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-6-ge1222803739e) initialized Starting run at 05:30:02 UTC on 2024-10-08. Successfully read inputs file ... Castro git describe: 24.10-1-g68c1a1537 AMReX git describe: 24.10-6-ge12228037 Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014457676 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353731464 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34878891 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.331310991 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.361588701 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.350912574 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.351509651 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.334055571 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.341225039 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.33859983 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.338318708 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009957179 seconds Ending run at 05:30:06 UTC on 2024-10-08. Run time = 3.674141393 Run time without initialization = 3.466569038 Average number of zones advanced per microsecond: 0.756 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.6733 ... 3.6738 ... 3.6742 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2688 2.3528 2.4870 67.69% Gravity::make_radial_gravity() 21 0.2956 0.3111 0.3396 9.24% check_for_negative_density() 10 0.02302 0.163 0.2486 6.77% Castro::initData() 1 0.04854 0.0896 0.1434 3.90% Castro::estTimeStep() 21 0.04018 0.09325 0.1416 3.85% FabArray::ParallelCopy_finish() 41 0.04743 0.07241 0.1402 3.82% amrex::Copy() 193 0.05552 0.08412 0.09884 2.69% FabArray::setVal() 143 0.05724 0.07718 0.08478 2.31% Castro::reset_internal_energy(Fab) 1008 0.04564 0.04859 0.05222 1.42% FabArray::ParallelCopy_nowait() 41 0.03373 0.0425 0.04573 1.24% Castro::normalize_species() 62 0.04138 0.04325 0.04443 1.21% FillPatchIterator::Initialize 41 0.02575 0.0347 0.03893 1.06% StateData::FillBoundary(geom) 41 0.03227 0.03481 0.03876 1.06% Gravity::interpolate_monopole_grav() 21 0.02726 0.02898 0.03003 0.82% Castro::construct_new_gravity_source() 10 0.02344 0.02596 0.02852 0.78% Castro::computeTemp() 63 0.02015 0.02149 0.02234 0.61% Castro::initialize_do_advance() 10 0.01104 0.01922 0.02204 0.60% FabArray::setDomainBndry() 41 0.006854 0.01156 0.01818 0.49% Castro::initialize_advance() 10 0.004294 0.01215 0.01687 0.46% MultiFab::contains_nan() 20 0.009645 0.01129 0.01484 0.40% FabArray::Saxpy() 20 0.01078 0.01316 0.01467 0.40% Amr::writePlotFile() 2 0.008868 0.01127 0.01382 0.38% Castro::enforce_min_density() 62 0.00713 0.008273 0.01325 0.36% VisMF::Write(FabArray) 2 0.008994 0.00986 0.01234 0.34% Castro::construct_new_source() 50 0.005263 0.00663 0.01136 0.31% Castro::construct_old_gravity_source() 10 0.005257 0.00909 0.01051 0.29% main() 1 0.005148 0.005652 0.006011 0.16% Gravity::get_new_grav_vector() 11 0.002395 0.003796 0.004665 0.13% Gravity::get_old_grav_vector() 10 0.001481 0.002413 0.003368 0.09% Amr::coarseTimeStep() 10 0.001442 0.001915 0.002479 0.07% Castro::finalize_do_advance() 10 0.0004819 0.001008 0.001523 0.04% AmrLevel::FillPatch() 41 0.0008573 0.001155 0.001378 0.04% Amr::timeStep() 10 0.0001662 0.0002564 0.0005084 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002846 0.0003089 0.0003381 0.01% Castro::clean_state() 62 0.0001418 0.0001683 0.0002113 0.01% Castro::do_advance_ctu() 10 0.0001507 0.0001746 0.0002052 0.01% FillPatchIterator::FillFromLevel0() 41 9.485e-05 0.0001293 0.0001743 0.00% StateDataPhysBCFunct::() 41 0.0001062 0.0001235 0.0001419 0.00% Castro::do_old_sources() 10 8.771e-05 0.0001012 0.0001176 0.00% Castro::construct_old_source() 50 6.092e-05 7.898e-05 0.0001169 0.00% FabArray::ParallelCopy() 41 8.62e-05 0.0001007 0.0001165 0.00% FillPatchSingleLevel 41 7.837e-05 9.03e-05 0.00011 0.00% Castro::Castro() 1 5.336e-05 6.738e-05 8.503e-05 0.00% Amr::FinalizeInit() 1 4.049e-06 1.516e-05 7.754e-05 0.00% Castro::do_new_sources() 10 5.352e-05 6.476e-05 7.501e-05 0.00% Castro::apply_source_to_state() 20 4.164e-05 5.069e-05 7.195e-05 0.00% Castro::subcycle_advance_ctu() 10 4.828e-05 5.891e-05 6.99e-05 0.00% Amr::defBaseLevel() 1 4.862e-05 5.372e-05 6.154e-05 0.00% Castro::advance() 10 4.519e-05 5.065e-05 5.901e-05 0.00% Castro::construct_new_gravity() 10 2.999e-05 3.9e-05 5.441e-05 0.00% Castro::construct_old_gravity() 10 3.409e-05 4.183e-05 4.909e-05 0.00% Castro::expand_state() 10 2.796e-05 3.38e-05 3.795e-05 0.00% Castro::check_for_nan() 20 2.458e-05 2.817e-05 3.396e-05 0.00% Castro::post_timestep() 10 1.762e-05 2.017e-05 2.596e-05 0.00% Castro::post_init() 1 8.531e-06 1.118e-05 1.646e-05 0.00% Castro::computeNewDt() 9 8.234e-06 9.518e-06 1.05e-05 0.00% Amr::init() 1 2.192e-06 3.486e-06 1.03e-05 0.00% Amr::InitializeInit() 1 2.497e-06 3.355e-06 5.663e-06 0.00% Castro::computeInitialDt() 2 3.686e-06 4.175e-06 4.729e-06 0.00% Amr::initialInit() 1 1.541e-06 1.937e-06 2.648e-06 0.00% Other 200 0.01676 0.01948 0.02135 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.673 3.674 3.674 100.00% Amr::coarseTimeStep() 10 3.451 3.451 3.451 93.92% Amr::timeStep() 10 3.438 3.438 3.439 93.59% Castro::advance() 10 3.421 3.422 3.422 93.14% Castro::subcycle_advance_ctu() 10 3.326 3.336 3.36 91.45% Castro::do_advance_ctu() 10 3.326 3.336 3.36 91.45% Castro::construct_ctu_hydro_source() 10 2.532 2.538 2.548 69.35% Gravity::make_radial_gravity() 21 0.3135 0.3283 0.3505 9.54% AmrLevel::FillPatch() 41 0.2227 0.2322 0.2634 7.17% check_for_negative_density() 10 0.02302 0.163 0.2486 6.77% FillPatchIterator::Initialize 41 0.1819 0.1965 0.2405 6.55% Gravity::get_new_grav_vector() 11 0.2181 0.2299 0.2349 6.39% Castro::construct_old_gravity() 10 0.1848 0.1952 0.2129 5.79% Gravity::get_old_grav_vector() 10 0.1838 0.1944 0.2121 5.77% Castro::construct_new_gravity() 10 0.1962 0.2074 0.2119 5.77% Amr::init() 1 0.2069 0.2071 0.2072 5.64% FillPatchIterator::FillFromLevel0() 41 0.1315 0.1503 0.2069 5.63% FillPatchSingleLevel 41 0.1314 0.1501 0.2067 5.63% Amr::initialInit() 1 0.1925 0.1928 0.193 5.25% Castro::initialize_do_advance() 10 0.1733 0.1841 0.1905 5.18% FabArray::ParallelCopy() 41 0.09241 0.1151 0.1742 4.74% Amr::InitializeInit() 1 0.0689 0.1107 0.1659 4.52% Amr::defBaseLevel() 1 0.0689 0.1107 0.1659 4.52% Castro::initData() 1 0.05222 0.09353 0.1477 4.02% Castro::expand_state() 10 0.1174 0.1263 0.1425 3.88% Castro::estTimeStep() 21 0.04018 0.09325 0.1416 3.85% FabArray::ParallelCopy_finish() 41 0.04743 0.07241 0.1402 3.82% Castro::clean_state() 62 0.1148 0.1212 0.1317 3.59% Amr::FinalizeInit() 1 0.02659 0.08208 0.1237 3.37% Castro::do_old_sources() 10 0.0977 0.1007 0.1026 2.79% Castro::computeInitialDt() 2 0.00292 0.0581 0.09983 2.72% amrex::Copy() 193 0.05552 0.08412 0.09884 2.69% Castro::initialize_advance() 10 0.05678 0.08144 0.09105 2.48% FabArray::setVal() 143 0.05724 0.07718 0.08478 2.31% Castro::computeTemp() 63 0.06609 0.07039 0.07478 2.04% Castro::do_new_sources() 10 0.06325 0.06738 0.07449 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04594 0.0489 0.05255 1.43% Castro::reset_internal_energy(Fab) 1008 0.04564 0.04859 0.05222 1.42% FabArray::ParallelCopy_nowait() 41 0.03386 0.0426 0.04583 1.25% Castro::normalize_species() 62 0.04138 0.04325 0.04443 1.21% StateDataPhysBCFunct::() 41 0.03242 0.03493 0.03888 1.06% StateData::FillBoundary(geom) 41 0.03227 0.03481 0.03876 1.06% Castro::construct_new_source() 50 0.02949 0.03259 0.0348 0.95% Castro::finalize_do_advance() 10 0.01629 0.02681 0.03338 0.91% Gravity::interpolate_monopole_grav() 21 0.02726 0.02898 0.03003 0.82% Castro::construct_new_gravity_source() 10 0.02344 0.02596 0.02852 0.78% Amr::writePlotFile() 2 0.02431 0.02443 0.02473 0.67% Castro::post_init() 1 0.02303 0.02348 0.02369 0.64% FabArray::setDomainBndry() 41 0.006854 0.01156 0.01818 0.49% Castro::post_timestep() 10 0.01589 0.01624 0.01659 0.45% Castro::check_for_nan() 20 0.009672 0.01132 0.01488 0.40% MultiFab::contains_nan() 20 0.009645 0.01129 0.01484 0.40% Castro::apply_source_to_state() 20 0.01082 0.01321 0.01474 0.40% FabArray::Saxpy() 20 0.01078 0.01316 0.01467 0.40% Castro::enforce_min_density() 62 0.00713 0.008273 0.01325 0.36% VisMF::Write(FabArray) 2 0.008994 0.00986 0.01234 0.34% Castro::Castro() 1 0.009865 0.01094 0.01178 0.32% Castro::construct_old_source() 50 0.005318 0.009168 0.01062 0.29% Castro::construct_old_gravity_source() 10 0.005257 0.00909 0.01051 0.29% Castro::computeNewDt() 9 0.009343 0.00936 0.00938 0.26% Other 200 0.02787 0.03157 0.03432 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6726 KiB 6733 KiB 6738 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4524 KiB 4536 KiB 4570 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 233 KiB 265 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2790 KiB 2793 KiB 2794 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 217 KiB 227 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 46 KiB 71 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 80 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 67 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-6-ge1222803739e) finalized