Initializing AMReX (24.10-6-ge1222803739e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-6-ge1222803739e) initialized Starting run at 05:21:33 UTC on 2024-10-09. Successfully read inputs file ... Castro git describe: 24.10-1-g68c1a1537 AMReX git describe: 24.10-6-ge12228037 Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016066708 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.359693168 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.350733816 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.35568974 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.36542968 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.353264951 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.31346047 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.311093916 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.31241279 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309934355 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.314575846 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008032296 seconds Ending run at 05:21:37 UTC on 2024-10-09. Run time = 3.558397635 Run time without initialization = 3.359276535 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5579 ... 3.5582 ... 3.5584 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3091 2.3426 2.3833 66.98% Gravity::make_radial_gravity() 21 0.2945 0.3016 0.3067 8.62% Castro::estTimeStep() 21 0.04285 0.08508 0.1325 3.72% Castro::initData() 1 0.0515 0.08759 0.1291 3.63% check_for_negative_density() 10 0.05024 0.09249 0.1267 3.56% amrex::Copy() 193 0.07597 0.08237 0.08888 2.50% FabArray::setVal() 143 0.06456 0.07342 0.08322 2.34% FabArray::ParallelCopy_finish() 41 0.04638 0.06087 0.07304 2.05% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04803 0.05219 1.47% Castro::normalize_species() 62 0.04179 0.04326 0.0447 1.26% FabArray::ParallelCopy_nowait() 41 0.04085 0.04192 0.04348 1.22% FillPatchIterator::Initialize 41 0.03215 0.03529 0.03795 1.07% StateData::FillBoundary(geom) 41 0.03209 0.03452 0.03574 1.00% Gravity::interpolate_monopole_grav() 21 0.02775 0.02988 0.03198 0.90% Castro::construct_new_gravity_source() 10 0.02451 0.0269 0.03019 0.85% Castro::computeTemp() 63 0.02061 0.02116 0.0219 0.62% Castro::initialize_do_advance() 10 0.01734 0.01932 0.02157 0.61% FabArray::Saxpy() 20 0.01183 0.01296 0.01389 0.39% Castro::initialize_advance() 10 0.009775 0.01163 0.01382 0.39% VisMF::Write(FabArray) 2 0.009635 0.01056 0.01377 0.39% FabArray::setDomainBndry() 41 0.007935 0.0103 0.01225 0.34% Amr::writePlotFile() 2 0.007695 0.01099 0.01191 0.33% MultiFab::contains_nan() 20 0.009561 0.01051 0.01106 0.31% Castro::initMFs() 1 0.006358 0.00771 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.009286 0.009493 0.009694 0.27% Amr::coarseTimeStep() 10 0.002437 0.006946 0.009253 0.26% Castro::construct_new_source() 50 0.005789 0.006125 0.006346 0.18% main() 1 0.003747 0.004098 0.004334 0.12% Gravity::get_new_grav_vector() 11 0.003326 0.003644 0.004068 0.11% Gravity::get_old_grav_vector() 10 0.00162 0.00213 0.002573 0.07% Castro::finalize_do_advance() 10 0.001162 0.001266 0.001778 0.05% AmrLevel::FillPatch() 41 0.0009129 0.001055 0.001346 0.04% Amr::timeStep() 10 0.0001786 0.0002254 0.0004243 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0003034 0.000352 0.01% Castro::clean_state() 62 0.0001435 0.0001552 0.0001813 0.01% Castro::do_advance_ctu() 10 0.0001368 0.0001561 0.0001658 0.00% FillPatchIterator::FillFromLevel0() 41 9.277e-05 0.0001106 0.0001437 0.00% StateDataPhysBCFunct::() 41 0.0001017 0.0001147 0.0001291 0.00% Castro::do_old_sources() 10 8.222e-05 9.584e-05 0.000115 0.00% FabArray::ParallelCopy() 41 8.932e-05 9.649e-05 0.0001055 0.00% FillPatchSingleLevel 41 6.949e-05 8.021e-05 9.802e-05 0.00% Amr::FinalizeInit() 1 3.875e-06 1.597e-05 9.396e-05 0.00% Castro::Castro() 1 5.393e-05 6.937e-05 8.764e-05 0.00% Castro::construct_old_source() 50 6.721e-05 7.315e-05 8.526e-05 0.00% Castro::do_new_sources() 10 5.415e-05 6.285e-05 7.101e-05 0.00% Amr::defBaseLevel() 1 4.811e-05 5.681e-05 6.547e-05 0.00% Castro::subcycle_advance_ctu() 10 4.596e-05 5.392e-05 6.241e-05 0.00% Castro::advance() 10 4.245e-05 4.693e-05 5.6e-05 0.00% Castro::apply_source_to_state() 20 4.334e-05 4.796e-05 5.299e-05 0.00% Castro::construct_new_gravity() 10 3.069e-05 3.763e-05 4.959e-05 0.00% Castro::construct_old_gravity() 10 3.379e-05 3.868e-05 4.132e-05 0.00% Castro::check_for_nan() 20 2.366e-05 2.583e-05 2.999e-05 0.00% Castro::expand_state() 10 2.441e-05 2.583e-05 2.73e-05 0.00% Castro::post_timestep() 10 1.806e-05 2.173e-05 2.468e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.74e-06 1.273e-05 2.087e-05 0.00% Amr::InitializeInit() 1 2.973e-06 7.055e-06 1.636e-05 0.00% Castro::post_init() 1 8.296e-06 1.039e-05 1.566e-05 0.00% Castro::computeNewDt() 9 8.524e-06 9.653e-06 1.164e-05 0.00% Amr::init() 1 2.136e-06 4.133e-06 9.518e-06 0.00% Castro::computeInitialDt() 2 3.724e-06 4.299e-06 4.991e-06 0.00% Amr::initialInit() 1 1.473e-06 1.923e-06 2.344e-06 0.00% Other 260 0.01743 0.02048 0.02381 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.558 3.558 3.558 100.00% Amr::coarseTimeStep() 10 3.347 3.347 3.347 94.06% Amr::timeStep() 10 3.326 3.329 3.333 93.67% Castro::advance() 10 3.31 3.311 3.313 93.11% Castro::subcycle_advance_ctu() 10 3.224 3.232 3.239 91.02% Castro::do_advance_ctu() 10 3.224 3.232 3.239 91.02% Castro::construct_ctu_hydro_source() 10 2.454 2.456 2.458 69.08% Gravity::make_radial_gravity() 21 0.3122 0.3187 0.3235 9.09% AmrLevel::FillPatch() 41 0.1988 0.2173 0.233 6.55% Gravity::get_new_grav_vector() 11 0.2237 0.2248 0.2261 6.35% Castro::construct_new_gravity() 10 0.2006 0.2014 0.2024 5.69% Amr::init() 1 0.1986 0.1987 0.1988 5.59% FillPatchIterator::Initialize 41 0.1673 0.1834 0.1978 5.56% Castro::construct_old_gravity() 10 0.1821 0.1865 0.19 5.34% Gravity::get_old_grav_vector() 10 0.181 0.1855 0.1889 5.31% Castro::initialize_do_advance() 10 0.1672 0.176 0.1855 5.21% Amr::initialInit() 1 0.1823 0.1824 0.1825 5.13% Amr::InitializeInit() 1 0.07055 0.1091 0.1551 4.36% Amr::defBaseLevel() 1 0.07054 0.1091 0.1551 4.36% FillPatchIterator::FillFromLevel0() 41 0.1251 0.1378 0.1515 4.26% FillPatchSingleLevel 41 0.125 0.1377 0.1514 4.26% Castro::initData() 1 0.05535 0.09125 0.1329 3.74% Castro::estTimeStep() 21 0.04285 0.08508 0.1325 3.72% Castro::expand_state() 10 0.1091 0.1195 0.1309 3.68% check_for_negative_density() 10 0.05024 0.09249 0.1267 3.56% Castro::clean_state() 62 0.1155 0.1195 0.1264 3.55% FabArray::ParallelCopy() 41 0.08913 0.103 0.1161 3.26% Amr::FinalizeInit() 1 0.02712 0.07333 0.1119 3.14% Castro::do_old_sources() 10 0.0949 0.09816 0.1002 2.82% amrex::Copy() 193 0.07597 0.08237 0.08888 2.50% Castro::computeInitialDt() 2 0.002284 0.04844 0.08687 2.44% FabArray::setVal() 143 0.06456 0.07342 0.08322 2.34% Castro::initialize_advance() 10 0.06829 0.07544 0.08257 2.32% Castro::do_new_sources() 10 0.06006 0.06946 0.07878 2.21% Castro::computeTemp() 63 0.06723 0.0695 0.07444 2.09% FabArray::ParallelCopy_finish() 41 0.04638 0.06087 0.07304 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04634 0.04834 0.05255 1.48% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04803 0.05219 1.47% Castro::normalize_species() 62 0.04179 0.04326 0.0447 1.26% FabArray::ParallelCopy_nowait() 41 0.04095 0.04202 0.04356 1.22% Castro::finalize_do_advance() 10 0.01829 0.02777 0.03669 1.03% Castro::construct_new_source() 50 0.03041 0.03303 0.03642 1.02% StateDataPhysBCFunct::() 41 0.0322 0.03464 0.03586 1.01% StateData::FillBoundary(geom) 41 0.03209 0.03452 0.03574 1.00% Gravity::interpolate_monopole_grav() 21 0.02775 0.02988 0.03198 0.90% Castro::construct_new_gravity_source() 10 0.02451 0.0269 0.03019 0.85% Amr::writePlotFile() 2 0.02435 0.02444 0.02458 0.69% Castro::post_init() 1 0.02387 0.02432 0.02445 0.69% Castro::post_timestep() 10 0.01581 0.01749 0.02255 0.63% Castro::Castro() 1 0.009617 0.01124 0.01437 0.40% Castro::apply_source_to_state() 20 0.01188 0.01301 0.01394 0.39% FabArray::Saxpy() 20 0.01183 0.01296 0.01389 0.39% VisMF::Write(FabArray) 2 0.009635 0.01056 0.01377 0.39% FabArray::setDomainBndry() 41 0.007935 0.0103 0.01225 0.34% Castro::check_for_nan() 20 0.009585 0.01054 0.01108 0.31% MultiFab::contains_nan() 20 0.009561 0.01051 0.01106 0.31% Castro::initMFs() 1 0.006358 0.00771 0.0103 0.29% Castro::computeNewDt() 9 0.01013 0.01015 0.01018 0.29% Castro::construct_old_source() 50 0.009358 0.009567 0.009779 0.27% Castro::construct_old_gravity_source() 10 0.009286 0.009493 0.009694 0.27% AmrLevel::AmrLevel(dm) 1 0.005467 0.006396 0.008176 0.23% Other 260 0.02192 0.02615 0.03131 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8671 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6731 KiB 6737 KiB 6738 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4527 KiB 4537 KiB 4546 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 227 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2787 KiB 2791 KiB 2793 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 228 KiB 231 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 66 KiB 68 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-6-ge1222803739e) finalized