Initializing AMReX (24.10-8-g8df11b69a116)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-8-g8df11b69a116) initialized Starting run at 05:25:38 UTC on 2024-10-10. Successfully read inputs file ... Castro git describe: 24.10-1-g68c1a1537 AMReX git describe: 24.10-8-g8df11b69a Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014661585 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352485679 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343580697 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339273834 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.359722993 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362368828 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307253131 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304490908 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305444521 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305754212 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305648145 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008065486 seconds Ending run at 05:25:41 UTC on 2024-10-10. Run time = 3.501009864 Run time without initialization = 3.298669546 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5008 ... 3.5010 ... 3.5011 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2499 2.2997 2.3427 66.91% Gravity::make_radial_gravity() 21 0.304 0.3125 0.3299 9.42% Castro::initData() 1 0.0477 0.09408 0.1405 4.01% check_for_negative_density() 10 0.04081 0.08594 0.139 3.97% Castro::estTimeStep() 21 0.03176 0.07927 0.1277 3.65% FabArray::ParallelCopy_finish() 41 0.04351 0.06919 0.09758 2.79% amrex::Copy() 193 0.06413 0.0784 0.08765 2.50% FabArray::setVal() 143 0.05892 0.06613 0.07846 2.24% Castro::reset_internal_energy(Fab) 1008 0.04598 0.04762 0.05031 1.44% Castro::normalize_species() 62 0.04109 0.04287 0.04386 1.25% FabArray::ParallelCopy_nowait() 41 0.03517 0.04037 0.04217 1.20% FillPatchIterator::Initialize 41 0.02863 0.03326 0.03857 1.10% StateData::FillBoundary(geom) 41 0.03137 0.03398 0.03626 1.04% Gravity::interpolate_monopole_grav() 21 0.02766 0.02919 0.03027 0.86% Castro::construct_new_gravity_source() 10 0.02253 0.02462 0.02812 0.80% Castro::computeTemp() 63 0.02072 0.02148 0.02408 0.69% Castro::initialize_do_advance() 10 0.01316 0.01753 0.02204 0.63% MultiFab::contains_nan() 20 0.009627 0.01091 0.01337 0.38% FabArray::Saxpy() 20 0.01121 0.01187 0.01277 0.36% FabArray::setDomainBndry() 41 0.006963 0.01017 0.01256 0.36% Castro::initialize_advance() 10 0.005433 0.0097 0.01213 0.35% Amr::writePlotFile() 2 0.008157 0.01038 0.01209 0.35% VisMF::Write(FabArray) 2 0.008932 0.009773 0.01209 0.35% Castro::initMFs() 1 0.006339 0.007611 0.01038 0.30% Castro::construct_old_gravity_source() 10 0.006697 0.008737 0.009368 0.27% Amr::coarseTimeStep() 10 0.001072 0.006049 0.007588 0.22% Castro::construct_new_source() 50 0.005381 0.005909 0.006072 0.17% Gravity::get_new_grav_vector() 11 0.003091 0.003856 0.005447 0.16% main() 1 0.003726 0.003854 0.003965 0.11% Gravity::get_old_grav_vector() 10 0.001565 0.002063 0.002492 0.07% Castro::finalize_do_advance() 10 0.0004788 0.0009191 0.00107 0.03% AmrLevel::FillPatch() 41 0.000774 0.0009589 0.001049 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0002806 0.0003408 0.0006805 0.02% Amr::timeStep() 10 0.0001601 0.0002174 0.0004114 0.01% Castro::clean_state() 62 0.000135 0.0001582 0.0001897 0.01% FillPatchIterator::FillFromLevel0() 41 9.779e-05 0.0001193 0.0001633 0.00% Castro::do_advance_ctu() 10 0.0001334 0.0001489 0.0001616 0.00% StateDataPhysBCFunct::() 41 0.0001011 0.000117 0.0001565 0.00% FabArray::ParallelCopy() 41 8.449e-05 9.497e-05 0.0001141 0.00% FillPatchSingleLevel 41 7.402e-05 8.202e-05 9.721e-05 0.00% Castro::do_old_sources() 10 7.206e-05 8.345e-05 9.435e-05 0.00% Castro::construct_old_source() 50 5.946e-05 7.482e-05 9.279e-05 0.00% Amr::FinalizeInit() 1 3.914e-06 1.504e-05 9.039e-05 0.00% Castro::Castro() 1 5.117e-05 6.616e-05 8.049e-05 0.00% Amr::defBaseLevel() 1 4.334e-05 5.469e-05 7.028e-05 0.00% Castro::do_new_sources() 10 4.673e-05 5.396e-05 6.042e-05 0.00% Castro::subcycle_advance_ctu() 10 4.437e-05 5.166e-05 5.886e-05 0.00% Castro::apply_source_to_state() 20 3.841e-05 4.574e-05 5.755e-05 0.00% Castro::advance() 10 4.096e-05 4.367e-05 5.276e-05 0.00% Castro::construct_old_gravity() 10 3.155e-05 3.65e-05 4.512e-05 0.00% Castro::construct_new_gravity() 10 2.753e-05 3.13e-05 3.726e-05 0.00% Castro::check_for_nan() 20 2.434e-05 2.824e-05 3.692e-05 0.00% Castro::expand_state() 10 2.125e-05 2.56e-05 3.006e-05 0.00% Castro::post_timestep() 10 1.462e-05 1.924e-05 2.463e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.34e-06 1.399e-05 2.036e-05 0.00% Castro::post_init() 1 8.803e-06 1.09e-05 1.734e-05 0.00% Amr::InitializeInit() 1 2.686e-06 5.144e-06 1.141e-05 0.00% Castro::computeNewDt() 9 8.116e-06 8.696e-06 9.472e-06 0.00% Castro::computeInitialDt() 2 3.27e-06 4.237e-06 5.157e-06 0.00% Amr::init() 1 2.078e-06 2.519e-06 2.98e-06 0.00% Amr::initialInit() 1 1.631e-06 1.895e-06 2.491e-06 0.00% Other 260 0.01717 0.02012 0.024 0.69% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.501 3.501 3.501 100.00% Amr::coarseTimeStep() 10 3.287 3.287 3.287 93.88% Amr::timeStep() 10 3.269 3.27 3.275 93.56% Castro::advance() 10 3.253 3.254 3.255 92.98% Castro::subcycle_advance_ctu() 10 3.173 3.182 3.187 91.03% Castro::do_advance_ctu() 10 3.173 3.182 3.187 91.03% Castro::construct_ctu_hydro_source() 10 2.404 2.407 2.41 68.85% Gravity::make_radial_gravity() 21 0.3197 0.3285 0.3435 9.81% AmrLevel::FillPatch() 41 0.2049 0.2197 0.2307 6.59% Gravity::get_new_grav_vector() 11 0.2196 0.2229 0.2243 6.41% Castro::construct_old_gravity() 10 0.1869 0.1937 0.206 5.88% Gravity::get_old_grav_vector() 10 0.1862 0.1929 0.2049 5.85% Amr::init() 1 0.2016 0.2019 0.202 5.77% Castro::construct_new_gravity() 10 0.1968 0.1995 0.2009 5.74% FillPatchIterator::Initialize 41 0.1703 0.1875 0.2002 5.72% Castro::initialize_do_advance() 10 0.1749 0.1821 0.1921 5.49% Amr::initialInit() 1 0.1868 0.1872 0.1874 5.35% FillPatchIterator::FillFromLevel0() 41 0.1212 0.144 0.1646 4.70% FillPatchSingleLevel 41 0.1211 0.1439 0.1645 4.70% Amr::InitializeInit() 1 0.06862 0.1156 0.1602 4.58% Amr::defBaseLevel() 1 0.06862 0.1156 0.1602 4.58% Castro::initData() 1 0.05126 0.0979 0.1447 4.13% check_for_negative_density() 10 0.04081 0.08594 0.139 3.97% Castro::expand_state() 10 0.118 0.1273 0.1389 3.97% FabArray::ParallelCopy() 41 0.08468 0.1097 0.1329 3.80% Castro::estTimeStep() 21 0.03176 0.07927 0.1277 3.65% Castro::clean_state() 62 0.1164 0.1188 0.1232 3.52% Amr::FinalizeInit() 1 0.02668 0.07159 0.1188 3.39% Castro::do_old_sources() 10 0.08945 0.09538 0.09921 2.83% FabArray::ParallelCopy_finish() 41 0.04351 0.06919 0.09758 2.79% Castro::computeInitialDt() 2 0.002265 0.04677 0.09384 2.68% amrex::Copy() 193 0.06413 0.0784 0.08765 2.50% FabArray::setVal() 143 0.05892 0.06613 0.07846 2.24% Castro::initialize_advance() 10 0.06234 0.06809 0.07728 2.21% Castro::do_new_sources() 10 0.05956 0.06469 0.07306 2.09% Castro::computeTemp() 63 0.06727 0.06944 0.07279 2.08% Castro::reset_internal_energy(MultiFab) 63 0.04628 0.04796 0.0506 1.45% Castro::reset_internal_energy(Fab) 1008 0.04598 0.04762 0.05031 1.44% Castro::normalize_species() 62 0.04109 0.04287 0.04386 1.25% FabArray::ParallelCopy_nowait() 41 0.03526 0.04046 0.04225 1.21% StateDataPhysBCFunct::() 41 0.03148 0.03409 0.03637 1.04% StateData::FillBoundary(geom) 41 0.03137 0.03398 0.03626 1.04% Castro::construct_new_source() 50 0.02859 0.03053 0.03411 0.97% Gravity::interpolate_monopole_grav() 21 0.02766 0.02919 0.03027 0.86% Castro::finalize_do_advance() 10 0.01604 0.02442 0.03003 0.86% Castro::construct_new_gravity_source() 10 0.02253 0.02462 0.02812 0.80% Castro::post_init() 1 0.02393 0.02431 0.0245 0.70% Amr::writePlotFile() 2 0.02267 0.02285 0.02326 0.66% Castro::post_timestep() 10 0.01575 0.01647 0.01984 0.57% Castro::Castro() 1 0.009644 0.01104 0.01385 0.40% Castro::check_for_nan() 20 0.009652 0.01094 0.0134 0.38% MultiFab::contains_nan() 20 0.009627 0.01091 0.01337 0.38% Castro::apply_source_to_state() 20 0.01124 0.01192 0.01281 0.37% FabArray::Saxpy() 20 0.01121 0.01187 0.01277 0.36% FabArray::setDomainBndry() 41 0.006963 0.01017 0.01256 0.36% VisMF::Write(FabArray) 2 0.008932 0.009773 0.01209 0.35% Castro::initMFs() 1 0.006339 0.007611 0.01038 0.30% Castro::construct_old_source() 50 0.006757 0.008812 0.009451 0.27% Castro::construct_old_gravity_source() 10 0.006697 0.008737 0.009368 0.27% Castro::computeNewDt() 9 0.00901 0.009017 0.009031 0.26% AmrLevel::AmrLevel(dm) 1 0.005371 0.006316 0.00858 0.25% Other 260 0.02177 0.02585 0.03126 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8670 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6718 KiB 6725 KiB 6728 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4529 KiB 4541 KiB 4549 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 239 KiB 254 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2784 KiB 2787 KiB 2789 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 239 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 49 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-8-g8df11b69a116) finalized