Initializing AMReX (24.10-11-g62c2a81eac78)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-11-g62c2a81eac78) initialized Starting run at 05:39:08 UTC on 2024-10-14. Successfully read inputs file ... Castro git describe: 24.10-1-g68c1a1537 AMReX git describe: 24.10-11-g62c2a81ea Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014559978 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.358054972 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.334464168 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.329619448 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322897068 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.390034156 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.315232252 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308450378 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306663732 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309318293 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307271567 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007728604 seconds Ending run at 05:39:11 UTC on 2024-10-14. Run time = 3.488002953 Run time without initialization = 3.294754982 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4876 ... 3.4878 ... 3.4881 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2146 2.2961 2.3519 67.43% Gravity::make_radial_gravity() 21 0.3022 0.3105 0.3257 9.34% check_for_negative_density() 10 0.05292 0.1109 0.19 5.45% Castro::initData() 1 0.05091 0.0901 0.1304 3.74% Castro::estTimeStep() 21 0.03331 0.07159 0.1142 3.27% FabArray::ParallelCopy_finish() 41 0.03846 0.05942 0.1061 3.04% amrex::Copy() 193 0.06553 0.0794 0.09458 2.71% FabArray::setVal() 143 0.04874 0.06486 0.07183 2.06% Castro::reset_internal_energy(Fab) 1008 0.04309 0.04708 0.04887 1.40% Castro::normalize_species() 62 0.04197 0.04255 0.04406 1.26% FabArray::ParallelCopy_nowait() 41 0.03593 0.04037 0.042 1.20% StateData::FillBoundary(geom) 41 0.0311 0.03364 0.03542 1.02% FillPatchIterator::Initialize 41 0.0274 0.03193 0.03517 1.01% Gravity::interpolate_monopole_grav() 21 0.027 0.02953 0.0311 0.89% Castro::construct_new_gravity_source() 10 0.02308 0.02449 0.02639 0.76% Castro::computeTemp() 63 0.0195 0.02099 0.02224 0.64% Castro::initialize_do_advance() 10 0.01145 0.01577 0.01717 0.49% Castro::initialize_advance() 10 0.005301 0.01058 0.01352 0.39% VisMF::Write(FabArray) 2 0.0092 0.009857 0.01313 0.38% FabArray::Saxpy() 20 0.01089 0.01188 0.01308 0.38% MultiFab::contains_nan() 20 0.009054 0.01021 0.01122 0.32% Amr::writePlotFile() 2 0.007553 0.009593 0.01011 0.29% FabArray::setDomainBndry() 41 0.007125 0.008851 0.009716 0.28% Castro::construct_old_gravity_source() 10 0.006662 0.008789 0.009496 0.27% Castro::initMFs() 1 0.006493 0.007245 0.007737 0.22% Castro::construct_new_source() 50 0.005546 0.006123 0.006566 0.19% main() 1 0.003915 0.004123 0.004488 0.13% Gravity::get_new_grav_vector() 11 0.00276 0.003287 0.00366 0.10% Amr::coarseTimeStep() 10 0.001718 0.002424 0.003264 0.09% Gravity::get_old_grav_vector() 10 0.00146 0.002053 0.002394 0.07% Castro::finalize_do_advance() 10 0.0004915 0.001043 0.001294 0.04% AmrLevel::FillPatch() 41 0.0007757 0.0009612 0.001022 0.03% Amr::timeStep() 10 0.0001703 0.0002118 0.0004007 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002792 0.0002975 0.0003468 0.01% Castro::do_advance_ctu() 10 0.0001274 0.0001493 0.0001677 0.00% Castro::clean_state() 62 0.0001324 0.0001476 0.0001631 0.00% StateDataPhysBCFunct::() 41 9.521e-05 0.0001105 0.000137 0.00% FillPatchIterator::FillFromLevel0() 41 9.337e-05 9.956e-05 0.0001089 0.00% Castro::do_old_sources() 10 7.112e-05 8.509e-05 9.95e-05 0.00% FabArray::ParallelCopy() 41 7.922e-05 8.687e-05 9.818e-05 0.00% Castro::Castro() 1 6.492e-05 8.037e-05 9.406e-05 0.00% FillPatchSingleLevel 41 6.585e-05 7.56e-05 8.199e-05 0.00% Castro::construct_old_source() 50 5.18e-05 6.865e-05 7.985e-05 0.00% Castro::do_new_sources() 10 5.229e-05 6.129e-05 6.833e-05 0.00% Amr::FinalizeInit() 1 3.83e-06 1.222e-05 6.62e-05 0.00% Amr::defBaseLevel() 1 4.554e-05 5.165e-05 6.475e-05 0.00% Castro::subcycle_advance_ctu() 10 4.35e-05 4.965e-05 6.154e-05 0.00% Castro::apply_source_to_state() 20 4.116e-05 4.578e-05 5.215e-05 0.00% Castro::advance() 10 3.692e-05 4.41e-05 5e-05 0.00% Castro::construct_old_gravity() 10 3.182e-05 3.651e-05 4.293e-05 0.00% Castro::construct_new_gravity() 10 2.814e-05 3.311e-05 3.827e-05 0.00% Castro::check_for_nan() 20 2.343e-05 2.654e-05 3.013e-05 0.00% Castro::expand_state() 10 2.27e-05 2.579e-05 2.763e-05 0.00% Castro::post_timestep() 10 1.505e-05 1.64e-05 1.884e-05 0.00% Castro::post_init() 1 8.861e-06 1.047e-05 1.326e-05 0.00% Amr::InitializeInit() 1 2.733e-06 4.613e-06 1.114e-05 0.00% Castro::computeNewDt() 9 7.999e-06 8.691e-06 9.121e-06 0.00% Castro::computeInitialDt() 2 3.382e-06 4.104e-06 5.074e-06 0.00% Amr::init() 1 1.945e-06 2.268e-06 2.652e-06 0.00% Amr::initialInit() 1 1.523e-06 1.87e-06 2.235e-06 0.00% Other 261 0.01612 0.01964 0.02094 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.488 3.488 3.488 100.00% Amr::coarseTimeStep() 10 3.283 3.283 3.283 94.11% Amr::timeStep() 10 3.269 3.27 3.271 93.76% Castro::advance() 10 3.253 3.254 3.254 93.29% Castro::subcycle_advance_ctu() 10 3.179 3.183 3.2 91.75% Castro::do_advance_ctu() 10 3.179 3.183 3.2 91.75% Castro::construct_ctu_hydro_source() 10 2.425 2.428 2.432 69.72% Gravity::make_radial_gravity() 21 0.319 0.3261 0.3391 9.72% AmrLevel::FillPatch() 41 0.1867 0.2063 0.2365 6.78% Castro::construct_old_gravity() 10 0.1988 0.2042 0.2146 6.15% Gravity::get_old_grav_vector() 10 0.1981 0.2035 0.214 6.14% Gravity::get_new_grav_vector() 11 0.2083 0.2102 0.2121 6.08% FillPatchIterator::Initialize 41 0.1567 0.1747 0.2081 5.97% Amr::init() 1 0.1927 0.1929 0.1929 5.53% check_for_negative_density() 10 0.05292 0.1109 0.19 5.45% Castro::construct_new_gravity() 10 0.1867 0.1881 0.1893 5.43% Amr::initialInit() 1 0.178 0.1786 0.1788 5.13% FillPatchIterator::FillFromLevel0() 41 0.1141 0.1339 0.1736 4.98% FillPatchSingleLevel 41 0.114 0.1338 0.1735 4.97% Castro::initialize_do_advance() 10 0.1566 0.1619 0.1687 4.84% Amr::InitializeInit() 1 0.07268 0.1115 0.1525 4.37% Amr::defBaseLevel() 1 0.07268 0.1115 0.1525 4.37% FabArray::ParallelCopy() 41 0.07952 0.09997 0.1422 4.08% Castro::initData() 1 0.05446 0.09403 0.1341 3.85% Castro::expand_state() 10 0.103 0.1092 0.1214 3.48% Castro::clean_state() 62 0.1118 0.1174 0.121 3.47% Castro::estTimeStep() 21 0.03331 0.07159 0.1142 3.27% Castro::do_old_sources() 10 0.0908 0.09949 0.1076 3.08% FabArray::ParallelCopy_finish() 41 0.03846 0.05942 0.1061 3.04% Amr::FinalizeInit() 1 0.02619 0.06714 0.106 3.04% amrex::Copy() 193 0.06553 0.0794 0.09458 2.71% Castro::computeInitialDt() 2 0.002253 0.04322 0.08206 2.35% FabArray::setVal() 143 0.04874 0.06486 0.07183 2.06% Castro::initialize_advance() 10 0.04938 0.06727 0.07171 2.06% Castro::computeTemp() 63 0.06287 0.06837 0.07088 2.03% Castro::do_new_sources() 10 0.05832 0.06313 0.06908 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04337 0.04738 0.04917 1.41% Castro::reset_internal_energy(Fab) 1008 0.04309 0.04708 0.04887 1.40% Castro::normalize_species() 62 0.04197 0.04255 0.04406 1.26% FabArray::ParallelCopy_nowait() 41 0.03601 0.04046 0.04209 1.21% StateDataPhysBCFunct::() 41 0.03123 0.03375 0.03553 1.02% StateData::FillBoundary(geom) 41 0.0311 0.03364 0.03542 1.02% Castro::construct_new_source() 50 0.02891 0.03061 0.03282 0.94% Gravity::interpolate_monopole_grav() 21 0.027 0.02953 0.0311 0.89% Castro::construct_new_gravity_source() 10 0.02308 0.02449 0.02639 0.76% Castro::finalize_do_advance() 10 0.01432 0.02014 0.02473 0.71% Castro::post_init() 1 0.02293 0.02345 0.02358 0.68% Amr::writePlotFile() 2 0.02193 0.02205 0.02254 0.65% Castro::post_timestep() 10 0.01531 0.01607 0.01647 0.47% Castro::apply_source_to_state() 20 0.01094 0.01193 0.01313 0.38% VisMF::Write(FabArray) 2 0.0092 0.009857 0.01313 0.38% FabArray::Saxpy() 20 0.01089 0.01188 0.01308 0.38% Castro::Castro() 1 0.00955 0.0113 0.01205 0.35% Castro::check_for_nan() 20 0.009082 0.01024 0.01125 0.32% MultiFab::contains_nan() 20 0.009054 0.01021 0.01122 0.32% FabArray::setDomainBndry() 41 0.007125 0.008851 0.009716 0.28% Castro::construct_old_source() 50 0.006714 0.008858 0.009576 0.27% Castro::construct_old_gravity_source() 10 0.006662 0.008789 0.009496 0.27% Castro::computeNewDt() 9 0.009268 0.009278 0.009289 0.27% Castro::initMFs() 1 0.006493 0.007245 0.007737 0.22% Other 261 0.02615 0.03063 0.03243 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6737 KiB 6741 KiB 6742 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4559 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 200 KiB 218 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 238 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 41 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-11-g62c2a81eac78) finalized