Initializing AMReX (24.10-11-g62c2a81eac78)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-11-g62c2a81eac78) initialized Starting run at 05:24:09 UTC on 2024-10-15. Successfully read inputs file ... Castro git describe: 24.10-2-g7b80efd06 AMReX git describe: 24.10-11-g62c2a81ea Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017315765 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.389642913 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.390620016 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.334939291 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.398443526 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.330156583 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.318408547 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.316075445 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.321745266 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.348070472 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.331296839 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008381057 seconds Ending run at 05:24:12 UTC on 2024-10-15. Run time = 3.716322444 Run time without initialization = 3.4945246 Average number of zones advanced per microsecond: 0.750 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.7138 ... 3.7155 ... 3.7164 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3467 2.3955 2.4591 66.17% Gravity::make_radial_gravity() 21 0.3198 0.3297 0.3388 9.12% check_for_negative_density() 10 0.08602 0.1532 0.205 5.52% Castro::initData() 1 0.05113 0.09269 0.1436 3.86% Castro::estTimeStep() 21 0.04164 0.09377 0.1392 3.75% FabArray::setVal() 143 0.06635 0.0761 0.08298 2.23% amrex::Copy() 193 0.0687 0.07697 0.08269 2.23% FabArray::ParallelCopy_finish() 41 0.04531 0.05472 0.07747 2.08% Castro::normalize_species() 62 0.04435 0.05039 0.05773 1.55% Castro::reset_internal_energy(Fab) 1008 0.04822 0.05078 0.05425 1.46% FabArray::ParallelCopy_nowait() 41 0.03559 0.0398 0.04316 1.16% StateData::FillBoundary(geom) 41 0.03373 0.03677 0.03957 1.06% FillPatchIterator::Initialize 41 0.02855 0.03411 0.03685 0.99% Gravity::interpolate_monopole_grav() 21 0.02936 0.03014 0.031 0.83% Castro::construct_new_gravity_source() 10 0.024 0.02626 0.03046 0.82% Castro::computeTemp() 63 0.02191 0.02245 0.02308 0.62% Castro::initialize_do_advance() 10 0.01606 0.01772 0.01925 0.52% VisMF::Write(FabArray) 2 0.009572 0.0104 0.01435 0.39% Amr::writePlotFile() 2 0.009612 0.01274 0.01377 0.37% FabArray::Saxpy() 20 0.01077 0.01199 0.01346 0.36% FabArray::setDomainBndry() 41 0.007274 0.0107 0.01303 0.35% Castro::initialize_advance() 10 0.00948 0.01119 0.01302 0.35% MultiFab::contains_nan() 20 0.009641 0.01034 0.01129 0.30% Castro::initMFs() 1 0.008719 0.009825 0.01058 0.28% Castro::construct_old_gravity_source() 10 0.00854 0.009797 0.01055 0.28% Castro::construct_new_source() 50 0.005806 0.006266 0.006592 0.18% main() 1 0.003691 0.005335 0.006255 0.17% Gravity::get_new_grav_vector() 11 0.003045 0.003824 0.005668 0.15% Amr::coarseTimeStep() 10 0.002358 0.002872 0.003749 0.10% Gravity::get_old_grav_vector() 10 0.001907 0.002187 0.002826 0.08% Castro::finalize_do_advance() 10 0.001138 0.001206 0.00136 0.04% AmrLevel::FillPatch() 41 0.0008998 0.001004 0.001104 0.03% Amr::timeStep() 10 0.0001817 0.0002479 0.0005222 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002918 0.0003222 0.0003588 0.01% Castro::Castro() 1 8.374e-05 0.0001196 0.0001919 0.01% Castro::do_advance_ctu() 10 0.0001398 0.0001609 0.000185 0.00% Castro::clean_state() 62 0.0001527 0.0001635 0.0001756 0.00% StateDataPhysBCFunct::() 41 0.0001022 0.0001216 0.000156 0.00% FillPatchIterator::FillFromLevel0() 41 9.267e-05 0.0001077 0.0001175 0.00% FabArray::ParallelCopy() 41 8.082e-05 9.261e-05 0.0001013 0.00% Castro::do_old_sources() 10 7.94e-05 9.017e-05 0.0001001 0.00% Castro::construct_old_source() 50 6.476e-05 7.435e-05 8.695e-05 0.00% Amr::FinalizeInit() 1 4.88e-06 1.563e-05 8.276e-05 0.00% FillPatchSingleLevel 41 7.292e-05 7.845e-05 8.257e-05 0.00% Castro::subcycle_advance_ctu() 10 4.966e-05 6.199e-05 7.274e-05 0.00% Amr::defBaseLevel() 1 5.335e-05 5.918e-05 6.721e-05 0.00% Castro::do_new_sources() 10 4.936e-05 6.056e-05 6.584e-05 0.00% Castro::advance() 10 4.594e-05 5.274e-05 6.168e-05 0.00% Castro::apply_source_to_state() 20 4.257e-05 4.504e-05 4.776e-05 0.00% Castro::construct_old_gravity() 10 3.389e-05 3.872e-05 4.543e-05 0.00% Castro::construct_new_gravity() 10 2.755e-05 3.472e-05 4.219e-05 0.00% Castro::expand_state() 10 2.301e-05 2.819e-05 3.284e-05 0.00% Castro::check_for_nan() 20 2.575e-05 2.929e-05 3.262e-05 0.00% Castro::post_timestep() 10 1.795e-05 2.054e-05 2.739e-05 0.00% Castro::post_init() 1 8.267e-06 1.067e-05 1.599e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.773e-06 1.188e-05 1.408e-05 0.00% Castro::computeNewDt() 9 9.232e-06 1.035e-05 1.214e-05 0.00% Amr::init() 1 1.775e-06 2.957e-06 8.291e-06 0.00% Castro::computeInitialDt() 2 5.265e-06 5.975e-06 6.946e-06 0.00% Amr::InitializeInit() 1 2.706e-06 3.404e-06 5.579e-06 0.00% Amr::initialInit() 1 1.725e-06 1.978e-06 2.421e-06 0.00% Other 260 0.02012 0.02272 0.02418 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.714 3.715 3.716 100.00% Amr::coarseTimeStep() 10 3.48 3.48 3.48 93.64% Amr::timeStep() 10 3.465 3.466 3.466 93.26% Castro::advance() 10 3.447 3.448 3.448 92.78% Castro::subcycle_advance_ctu() 10 3.363 3.367 3.373 90.77% Castro::do_advance_ctu() 10 3.363 3.367 3.373 90.77% Castro::construct_ctu_hydro_source() 10 2.568 2.572 2.576 69.31% Gravity::make_radial_gravity() 21 0.3355 0.3458 0.353 9.50% Gravity::get_new_grav_vector() 11 0.229 0.2313 0.2336 6.28% Amr::init() 1 0.2213 0.2214 0.2215 5.96% AmrLevel::FillPatch() 41 0.2013 0.209 0.2125 5.72% Castro::construct_new_gravity() 10 0.2043 0.2064 0.2081 5.60% Castro::construct_old_gravity() 10 0.1963 0.2014 0.207 5.57% Gravity::get_old_grav_vector() 10 0.1957 0.2007 0.2063 5.55% check_for_negative_density() 10 0.08602 0.1532 0.205 5.52% Amr::initialInit() 1 0.2038 0.2045 0.205 5.51% FillPatchIterator::Initialize 41 0.1721 0.1766 0.1849 4.97% Castro::initialize_do_advance() 10 0.1715 0.1765 0.1799 4.84% Amr::InitializeInit() 1 0.07826 0.1226 0.1751 4.71% Amr::defBaseLevel() 1 0.07825 0.1226 0.1751 4.71% Castro::initData() 1 0.0567 0.09813 0.1492 4.01% FillPatchIterator::FillFromLevel0() 41 0.1237 0.1318 0.149 4.01% FillPatchSingleLevel 41 0.1236 0.1317 0.1489 4.01% Castro::estTimeStep() 21 0.04164 0.09377 0.1392 3.75% Castro::clean_state() 62 0.1234 0.1306 0.1347 3.62% Amr::FinalizeInit() 1 0.02962 0.08198 0.1266 3.41% Castro::expand_state() 10 0.1154 0.1202 0.1235 3.32% FabArray::ParallelCopy() 41 0.0861 0.09471 0.1132 3.05% Castro::do_old_sources() 10 0.09179 0.09543 0.09947 2.68% Castro::computeInitialDt() 2 0.002505 0.05502 0.09937 2.67% FabArray::setVal() 143 0.06635 0.0761 0.08298 2.23% amrex::Copy() 193 0.0687 0.07697 0.08269 2.23% Castro::initialize_advance() 10 0.07032 0.07653 0.08108 2.18% Castro::do_new_sources() 10 0.06782 0.07068 0.07764 2.09% FabArray::ParallelCopy_finish() 41 0.04531 0.05472 0.07747 2.08% Castro::computeTemp() 63 0.07042 0.07355 0.07696 2.07% Castro::normalize_species() 62 0.04435 0.05039 0.05773 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04851 0.05111 0.05456 1.47% Castro::reset_internal_energy(Fab) 1008 0.04822 0.05078 0.05425 1.46% FabArray::ParallelCopy_nowait() 41 0.03568 0.0399 0.04326 1.16% StateDataPhysBCFunct::() 41 0.03383 0.03689 0.03969 1.07% StateData::FillBoundary(geom) 41 0.03373 0.03677 0.03957 1.06% Castro::construct_new_source() 50 0.03005 0.03253 0.03684 0.99% Castro::finalize_do_advance() 10 0.02232 0.02971 0.03288 0.88% Gravity::interpolate_monopole_grav() 21 0.02936 0.03014 0.031 0.83% Castro::construct_new_gravity_source() 10 0.024 0.02626 0.03046 0.82% Castro::post_init() 1 0.02534 0.02604 0.02665 0.72% Amr::writePlotFile() 2 0.02496 0.02535 0.02594 0.70% Castro::post_timestep() 10 0.01646 0.01768 0.01906 0.51% Castro::Castro() 1 0.01409 0.01653 0.01785 0.48% VisMF::Write(FabArray) 2 0.009572 0.0104 0.01435 0.39% Castro::apply_source_to_state() 20 0.01082 0.01203 0.0135 0.36% FabArray::Saxpy() 20 0.01077 0.01199 0.01346 0.36% FabArray::setDomainBndry() 41 0.007274 0.0107 0.01303 0.35% Castro::check_for_nan() 20 0.009667 0.01037 0.01133 0.30% MultiFab::contains_nan() 20 0.009641 0.01034 0.01129 0.30% Castro::construct_old_source() 50 0.008605 0.009871 0.01062 0.29% Castro::initMFs() 1 0.008719 0.009825 0.01058 0.28% Castro::construct_old_gravity_source() 10 0.00854 0.009797 0.01055 0.28% Castro::computeNewDt() 9 0.01026 0.01027 0.01028 0.28% AmrLevel::AmrLevel(dm) 1 0.007213 0.007687 0.007962 0.21% Other 260 0.02509 0.02893 0.03122 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8662 KiB 8666 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6700 KiB 6706 KiB 6708 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4521 KiB 4526 KiB 4534 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 214 KiB 218 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2779 KiB 2782 KiB 2783 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 237 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-11-g62c2a81eac78) finalized