Initializing AMReX (24.10-11-g62c2a81eac78)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-11-g62c2a81eac78) initialized Starting run at 05:21:28 UTC on 2024-10-16. Successfully read inputs file ... Castro git describe: 24.10-2-g7b80efd06 AMReX git describe: 24.10-11-g62c2a81ea Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014759125 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.356274001 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33707145 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.353718428 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.359827889 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.33258183 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307427045 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307321452 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309463742 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30799055 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307824591 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.111152673 seconds Ending run at 05:21:31 UTC on 2024-10-16. Run time = 3.608857261 Run time without initialization = 3.395557547 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.6081 ... 3.6087 ... 3.6089 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2530 2.3152 2.3612 65.43% Gravity::make_radial_gravity() 21 0.2983 0.3047 0.3181 8.81% check_for_negative_density() 10 0.03938 0.08512 0.1505 4.17% Castro::initData() 1 0.04933 0.09092 0.1452 4.02% Castro::estTimeStep() 21 0.02326 0.08792 0.1342 3.72% Amr::writePlotFile() 2 0.1105 0.1138 0.1155 3.20% FabArray::ParallelCopy_finish() 41 0.04027 0.05903 0.08547 2.37% amrex::Copy() 193 0.0652 0.0775 0.08491 2.35% FabArray::setVal() 143 0.0626 0.06826 0.07832 2.17% Castro::reset_internal_energy(Fab) 1008 0.04526 0.04778 0.0498 1.38% Castro::normalize_species() 62 0.04141 0.04451 0.0474 1.31% FabArray::ParallelCopy_nowait() 41 0.03524 0.04065 0.04258 1.18% FillPatchIterator::Initialize 41 0.0295 0.03418 0.0371 1.03% StateData::FillBoundary(geom) 41 0.03211 0.03372 0.03508 0.97% Gravity::interpolate_monopole_grav() 21 0.02793 0.02992 0.03206 0.89% Castro::construct_new_gravity_source() 10 0.02272 0.02583 0.02858 0.79% Castro::computeTemp() 63 0.02065 0.02139 0.02228 0.62% Castro::initialize_do_advance() 10 0.01317 0.01797 0.02093 0.58% FabArray::Saxpy() 20 0.01147 0.01259 0.01405 0.39% FabArray::setDomainBndry() 41 0.007524 0.01043 0.01273 0.35% VisMF::Write(FabArray) 2 0.008883 0.00959 0.01273 0.35% Castro::initialize_advance() 10 0.005474 0.009901 0.01228 0.34% MultiFab::contains_nan() 20 0.009293 0.01009 0.01074 0.30% Castro::construct_old_gravity_source() 10 0.006555 0.008973 0.00952 0.26% Castro::initMFs() 1 0.006333 0.007059 0.008179 0.23% Castro::construct_new_source() 50 0.005486 0.006024 0.006247 0.17% main() 1 0.003653 0.004205 0.004428 0.12% Gravity::get_new_grav_vector() 11 0.002951 0.00346 0.004114 0.11% Amr::coarseTimeStep() 10 0.001961 0.002719 0.003524 0.10% Gravity::get_old_grav_vector() 10 0.001598 0.002096 0.002507 0.07% Castro::finalize_do_advance() 10 0.0004968 0.0009559 0.001043 0.03% AmrLevel::FillPatch() 41 0.0007322 0.0007927 0.0008544 0.02% Amr::timeStep() 10 0.0001589 0.0002196 0.000449 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002795 0.0002922 0.0003118 0.01% Castro::do_advance_ctu() 10 0.0001292 0.0001511 0.0001657 0.00% Castro::clean_state() 62 0.0001363 0.0001469 0.0001587 0.00% FillPatchIterator::FillFromLevel0() 41 9.666e-05 0.0001108 0.0001426 0.00% StateDataPhysBCFunct::() 41 9.673e-05 0.0001067 0.0001213 0.00% FabArray::ParallelCopy() 41 8.547e-05 9.603e-05 0.0001091 0.00% Castro::do_old_sources() 10 6.74e-05 8.693e-05 9.64e-05 0.00% FillPatchSingleLevel 41 6.642e-05 7.637e-05 9.296e-05 0.00% Castro::construct_old_source() 50 4.296e-05 6.928e-05 8.482e-05 0.00% Castro::Castro() 1 5.787e-05 6.942e-05 8.436e-05 0.00% Amr::FinalizeInit() 1 3.478e-06 1.328e-05 7.537e-05 0.00% Castro::do_new_sources() 10 4.752e-05 5.78e-05 6.686e-05 0.00% Amr::defBaseLevel() 1 4.681e-05 5.281e-05 6.073e-05 0.00% Castro::subcycle_advance_ctu() 10 3.694e-05 4.727e-05 5.777e-05 0.00% Castro::advance() 10 3.587e-05 4.49e-05 5.721e-05 0.00% Castro::apply_source_to_state() 20 3.276e-05 4.506e-05 5.28e-05 0.00% Castro::construct_old_gravity() 10 2.823e-05 3.527e-05 4.081e-05 0.00% Castro::construct_new_gravity() 10 2.732e-05 3.145e-05 3.755e-05 0.00% Castro::expand_state() 10 2.283e-05 2.585e-05 3.058e-05 0.00% Castro::check_for_nan() 20 2.28e-05 2.544e-05 2.823e-05 0.00% Castro::post_timestep() 10 1.622e-05 1.959e-05 2.325e-05 0.00% Castro::post_init() 1 8.871e-06 1.026e-05 1.277e-05 0.00% Castro::computeNewDt() 9 8.494e-06 9.039e-06 9.801e-06 0.00% Amr::InitializeInit() 1 2.854e-06 3.669e-06 6.107e-06 0.00% Castro::computeInitialDt() 2 3.135e-06 3.749e-06 4.516e-06 0.00% Amr::init() 1 1.777e-06 2.218e-06 2.729e-06 0.00% Amr::initialInit() 1 1.436e-06 1.863e-06 2.473e-06 0.00% Other 261 0.01712 0.0195 0.02189 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.608 3.609 3.609 100.00% Amr::coarseTimeStep() 10 3.28 3.28 3.28 90.89% Amr::timeStep() 10 3.266 3.267 3.268 90.55% Castro::advance() 10 3.25 3.25 3.251 90.09% Castro::subcycle_advance_ctu() 10 3.169 3.177 3.183 88.19% Castro::do_advance_ctu() 10 3.169 3.177 3.183 88.19% Castro::construct_ctu_hydro_source() 10 2.419 2.422 2.426 67.21% Gravity::make_radial_gravity() 21 0.3144 0.3205 0.3321 9.20% AmrLevel::FillPatch() 41 0.1932 0.21 0.2221 6.15% Gravity::get_new_grav_vector() 11 0.2156 0.2177 0.2194 6.08% Amr::init() 1 0.2127 0.2129 0.2129 5.90% Castro::construct_old_gravity() 10 0.1863 0.1908 0.2014 5.58% Gravity::get_old_grav_vector() 10 0.1851 0.1899 0.2003 5.55% Amr::initialInit() 1 0.1975 0.1979 0.1982 5.49% Castro::construct_new_gravity() 10 0.1906 0.1921 0.1936 5.37% FillPatchIterator::Initialize 41 0.1637 0.1785 0.1911 5.29% Castro::initialize_do_advance() 10 0.1658 0.1745 0.182 5.04% Amr::InitializeInit() 1 0.07003 0.1117 0.1682 4.66% Amr::defBaseLevel() 1 0.07003 0.1117 0.1682 4.66% FillPatchIterator::FillFromLevel0() 41 0.1162 0.1339 0.154 4.27% FillPatchSingleLevel 41 0.1161 0.1338 0.154 4.27% check_for_negative_density() 10 0.03938 0.08512 0.1505 4.17% Castro::initData() 1 0.0531 0.09501 0.1497 4.15% Castro::estTimeStep() 21 0.02326 0.08792 0.1342 3.72% Castro::expand_state() 10 0.1103 0.1197 0.1283 3.56% Amr::FinalizeInit() 1 0.02994 0.08621 0.1278 3.54% Amr::writePlotFile() 2 0.126 0.1262 0.1266 3.51% Castro::clean_state() 62 0.1153 0.1205 0.1262 3.50% FabArray::ParallelCopy() 41 0.08108 0.09987 0.1209 3.35% Castro::computeInitialDt() 2 0.002659 0.05918 0.1007 2.79% Castro::do_old_sources() 10 0.08938 0.09355 0.09618 2.66% FabArray::ParallelCopy_finish() 41 0.04027 0.05903 0.08547 2.37% amrex::Copy() 193 0.0652 0.0775 0.08491 2.35% FabArray::setVal() 143 0.0626 0.06826 0.07832 2.17% Castro::initialize_advance() 10 0.06345 0.07006 0.07732 2.14% Castro::do_new_sources() 10 0.06166 0.06797 0.07595 2.10% Castro::computeTemp() 63 0.06618 0.06947 0.07238 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04554 0.04808 0.05011 1.39% Castro::reset_internal_energy(Fab) 1008 0.04526 0.04778 0.0498 1.38% Castro::normalize_species() 62 0.04141 0.04451 0.0474 1.31% FabArray::ParallelCopy_nowait() 41 0.03532 0.04074 0.04266 1.18% StateDataPhysBCFunct::() 41 0.03222 0.03382 0.03518 0.97% StateData::FillBoundary(geom) 41 0.03211 0.03372 0.03508 0.97% Castro::construct_new_source() 50 0.02888 0.03186 0.03477 0.96% Gravity::interpolate_monopole_grav() 21 0.02793 0.02992 0.03206 0.89% Castro::construct_new_gravity_source() 10 0.02272 0.02583 0.02858 0.79% Castro::finalize_do_advance() 10 0.01271 0.02076 0.0271 0.75% Castro::post_init() 1 0.02583 0.02648 0.02689 0.75% Castro::post_timestep() 10 0.01587 0.01648 0.01724 0.48% Castro::apply_source_to_state() 20 0.0115 0.01263 0.0141 0.39% FabArray::Saxpy() 20 0.01147 0.01259 0.01405 0.39% FabArray::setDomainBndry() 41 0.007524 0.01043 0.01273 0.35% VisMF::Write(FabArray) 2 0.008883 0.00959 0.01273 0.35% Castro::Castro() 1 0.009552 0.01064 0.01172 0.32% Castro::check_for_nan() 20 0.00932 0.01012 0.01076 0.30% MultiFab::contains_nan() 20 0.009293 0.01009 0.01074 0.30% Castro::construct_old_source() 50 0.006598 0.009042 0.009604 0.27% Castro::construct_old_gravity_source() 10 0.006555 0.008973 0.00952 0.26% Castro::computeNewDt() 9 0.008943 0.008953 0.008963 0.25% Castro::initMFs() 1 0.006333 0.007059 0.008179 0.23% Other 261 0.02696 0.03101 0.03549 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 42 B 69 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8673 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6708 KiB 6714 KiB 6719 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4388 KiB 4398 KiB 4408 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 220 KiB 234 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2698 KiB 2701 KiB 2702 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 226 KiB 234 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 43 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 67 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-11-g62c2a81eac78) finalized