Initializing AMReX (24.10-11-g62c2a81eac78)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-11-g62c2a81eac78) initialized Starting run at 05:21:31 UTC on 2024-10-17. Successfully read inputs file ... Castro git describe: 24.10-2-g7b80efd06 AMReX git describe: 24.10-11-g62c2a81ea Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01443384 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346217774 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337088254 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.332009064 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.331302265 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367053798 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.323910728 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.333725745 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.353779714 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.319661375 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.321391359 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.339703072 seconds Ending run at 05:21:35 UTC on 2024-10-17. Run time = 3.898491485 Run time without initialization = 3.711888933 Average number of zones advanced per microsecond: 0.706 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.8963 ... 3.8974 ... 3.8986 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2798 2.3259 2.4471 62.77% Amr::writePlotFile() 2 0.3364 0.3409 0.344 8.82% Gravity::make_radial_gravity() 21 0.3014 0.3177 0.3345 8.58% check_for_negative_density() 10 0.01696 0.1446 0.1915 4.91% Castro::initData() 1 0.04735 0.08735 0.1236 3.17% FabArray::ParallelCopy_finish() 41 0.04757 0.06525 0.1193 3.06% Castro::estTimeStep() 21 0.03726 0.07147 0.1144 2.93% amrex::Copy() 193 0.05788 0.07865 0.08997 2.31% FabArray::setVal() 143 0.04893 0.06418 0.07189 1.84% Castro::reset_internal_energy(Fab) 1008 0.04316 0.04769 0.05756 1.48% Castro::normalize_species() 62 0.04135 0.04333 0.04775 1.22% FabArray::ParallelCopy_nowait() 41 0.03142 0.04077 0.04448 1.14% StateData::FillBoundary(geom) 41 0.03217 0.0347 0.04061 1.04% FillPatchIterator::Initialize 41 0.02531 0.03264 0.03681 0.94% Gravity::interpolate_monopole_grav() 21 0.0279 0.02962 0.03129 0.80% Castro::construct_new_gravity_source() 10 0.02303 0.02515 0.02766 0.71% Castro::computeTemp() 63 0.01968 0.02097 0.02266 0.58% Castro::initialize_do_advance() 10 0.0105 0.01567 0.01746 0.45% VisMF::Write(FabArray) 2 0.008544 0.01011 0.01544 0.40% FabArray::Saxpy() 20 0.008809 0.01159 0.01345 0.34% FabArray::setDomainBndry() 41 0.006012 0.009783 0.01291 0.33% MultiFab::contains_nan() 20 0.009752 0.01083 0.01253 0.32% Castro::initialize_advance() 10 0.004908 0.01034 0.01245 0.32% Castro::construct_old_gravity_source() 10 0.005536 0.008545 0.009561 0.25% Castro::initMFs() 1 0.006402 0.007114 0.008001 0.21% Castro::construct_new_source() 50 0.005382 0.006205 0.006533 0.17% main() 1 0.003441 0.004539 0.005657 0.15% Gravity::get_new_grav_vector() 11 0.002675 0.003286 0.004037 0.10% Amr::coarseTimeStep() 10 0.001524 0.002807 0.003523 0.09% Gravity::get_old_grav_vector() 10 0.001473 0.00201 0.002578 0.07% Castro::finalize_do_advance() 10 0.0004376 0.001001 0.001368 0.04% AmrLevel::FillPatch() 41 0.0007986 0.001026 0.001291 0.03% Amr::timeStep() 10 0.0001937 0.000241 0.0004813 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000271 0.0003073 0.0004035 0.01% Castro::do_advance_ctu() 10 0.0001419 0.0001582 0.0001882 0.00% Castro::clean_state() 62 0.0001394 0.0001567 0.0001669 0.00% FillPatchIterator::FillFromLevel0() 41 9.2e-05 0.000116 0.0001472 0.00% StateDataPhysBCFunct::() 41 9.773e-05 0.0001213 0.0001456 0.00% Castro::construct_old_source() 50 4.54e-05 7.432e-05 0.0001092 0.00% Castro::do_old_sources() 10 7.051e-05 9.097e-05 0.0001086 0.00% FabArray::ParallelCopy() 41 8.685e-05 9.579e-05 0.0001072 0.00% FillPatchSingleLevel 41 7.583e-05 8.348e-05 9.157e-05 0.00% Castro::do_new_sources() 10 4.958e-05 6.49e-05 8.378e-05 0.00% Amr::FinalizeInit() 1 3.668e-06 1.311e-05 7.582e-05 0.00% Castro::Castro() 1 6.366e-05 6.855e-05 7.53e-05 0.00% Castro::subcycle_advance_ctu() 10 4.064e-05 5.086e-05 6.83e-05 0.00% Amr::defBaseLevel() 1 4.454e-05 5.285e-05 5.887e-05 0.00% Castro::apply_source_to_state() 20 3.827e-05 4.606e-05 5.844e-05 0.00% Castro::advance() 10 3.99e-05 4.759e-05 5.197e-05 0.00% Castro::construct_new_gravity() 10 2.766e-05 3.488e-05 4.208e-05 0.00% Castro::construct_old_gravity() 10 3.189e-05 3.623e-05 4.191e-05 0.00% Castro::expand_state() 10 2.446e-05 2.908e-05 3.501e-05 0.00% Castro::check_for_nan() 20 2.29e-05 2.658e-05 2.966e-05 0.00% Castro::post_timestep() 10 1.664e-05 1.787e-05 1.972e-05 0.00% Castro::post_init() 1 8.874e-06 1.042e-05 1.461e-05 0.00% Castro::computeNewDt() 9 8.712e-06 9.41e-06 1.054e-05 0.00% Amr::init() 1 1.989e-06 3.009e-06 7.257e-06 0.00% Amr::InitializeInit() 1 2.772e-06 3.522e-06 5.78e-06 0.00% Castro::computeInitialDt() 2 3.249e-06 3.773e-06 4.392e-06 0.00% Amr::initialInit() 1 1.69e-06 2.082e-06 2.482e-06 0.00% Other 261 0.01704 0.01961 0.02115 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.896 3.897 3.899 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 86.36% Amr::timeStep() 10 3.352 3.353 3.354 86.04% Castro::advance() 10 3.336 3.336 3.337 85.59% Castro::subcycle_advance_ctu() 10 3.258 3.266 3.282 84.18% Castro::do_advance_ctu() 10 3.258 3.266 3.282 84.18% Castro::construct_ctu_hydro_source() 10 2.486 2.491 2.496 64.02% Amr::writePlotFile() 2 0.3544 0.3545 0.355 9.11% Gravity::make_radial_gravity() 21 0.3177 0.3334 0.3461 8.88% AmrLevel::FillPatch() 41 0.1986 0.2154 0.2376 6.09% Gravity::get_new_grav_vector() 11 0.2147 0.2166 0.2183 5.60% Castro::construct_old_gravity() 10 0.1964 0.2071 0.2168 5.56% Gravity::get_old_grav_vector() 10 0.1956 0.2064 0.2161 5.54% FillPatchIterator::Initialize 41 0.1705 0.1837 0.2149 5.51% Castro::construct_new_gravity() 10 0.193 0.1943 0.1958 5.02% check_for_negative_density() 10 0.01696 0.1446 0.1915 4.91% Amr::init() 1 0.1861 0.1862 0.1862 4.78% FillPatchIterator::FillFromLevel0() 41 0.1306 0.1412 0.1836 4.71% FillPatchSingleLevel 41 0.1305 0.1411 0.1835 4.71% Castro::initialize_do_advance() 10 0.1595 0.1671 0.1722 4.42% Amr::initialInit() 1 0.171 0.1715 0.1716 4.40% FabArray::ParallelCopy() 41 0.09222 0.1062 0.1509 3.87% Amr::InitializeInit() 1 0.06689 0.1081 0.1455 3.73% Amr::defBaseLevel() 1 0.06689 0.1081 0.1455 3.73% Castro::clean_state() 62 0.1121 0.119 0.1288 3.30% Castro::initData() 1 0.05126 0.09108 0.1276 3.27% Castro::expand_state() 10 0.1057 0.1139 0.1246 3.20% FabArray::ParallelCopy_finish() 41 0.04757 0.06525 0.1193 3.06% Castro::estTimeStep() 21 0.03726 0.07147 0.1144 2.93% Castro::do_old_sources() 10 0.09272 0.1022 0.1082 2.77% Amr::FinalizeInit() 1 0.02558 0.06343 0.1047 2.69% amrex::Copy() 193 0.05788 0.07865 0.08997 2.31% Castro::computeInitialDt() 2 0.002186 0.03955 0.08076 2.07% Castro::computeTemp() 63 0.06311 0.06897 0.08057 2.07% Castro::initialize_advance() 10 0.05056 0.06732 0.07499 1.92% FabArray::setVal() 143 0.04893 0.06418 0.07189 1.84% Castro::do_new_sources() 10 0.0592 0.06357 0.06754 1.73% Castro::reset_internal_energy(MultiFab) 63 0.04343 0.048 0.05796 1.49% Castro::reset_internal_energy(Fab) 1008 0.04316 0.04769 0.05756 1.48% Castro::normalize_species() 62 0.04135 0.04333 0.04775 1.22% FabArray::ParallelCopy_nowait() 41 0.03151 0.04087 0.04456 1.14% StateDataPhysBCFunct::() 41 0.03228 0.03482 0.04073 1.04% StateData::FillBoundary(geom) 41 0.03217 0.0347 0.04061 1.04% Castro::construct_new_source() 50 0.02841 0.03136 0.03416 0.88% Gravity::interpolate_monopole_grav() 21 0.0279 0.02962 0.03129 0.80% Castro::construct_new_gravity_source() 10 0.02303 0.02515 0.02766 0.71% Castro::finalize_do_advance() 10 0.01792 0.02321 0.02667 0.68% Castro::post_init() 1 0.0231 0.02345 0.02359 0.61% Castro::post_timestep() 10 0.01546 0.01631 0.01755 0.45% VisMF::Write(FabArray) 2 0.008544 0.01011 0.01544 0.40% Castro::apply_source_to_state() 20 0.008847 0.01163 0.0135 0.35% FabArray::Saxpy() 20 0.008809 0.01159 0.01345 0.34% FabArray::setDomainBndry() 41 0.006012 0.009783 0.01291 0.33% Castro::check_for_nan() 20 0.00978 0.01086 0.01256 0.32% MultiFab::contains_nan() 20 0.009752 0.01083 0.01253 0.32% Castro::Castro() 1 0.009436 0.01084 0.0119 0.31% Castro::computeNewDt() 9 0.009714 0.009719 0.009726 0.25% Castro::construct_old_source() 50 0.005582 0.008619 0.009667 0.25% Castro::construct_old_gravity_source() 10 0.005536 0.008545 0.009561 0.25% Castro::initMFs() 1 0.006402 0.007114 0.008001 0.21% Other 261 0.02676 0.03055 0.03302 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 13 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8668 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6789 KiB 6795 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4176 KiB 4185 KiB 4207 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 188 KiB 203 KiB 226 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 12 KiB 15 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2564 KiB 2567 KiB 2567 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 207 KiB 218 KiB 226 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 39 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 70 KiB 71 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-11-g62c2a81eac78) finalized