Initializing AMReX (24.10-11-g62c2a81eac78)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-11-g62c2a81eac78) initialized Starting run at 05:25:36 UTC on 2024-10-18. Successfully read inputs file ... Castro git describe: 24.10-5-g71b5b56cc AMReX git describe: 24.10-11-g62c2a81ea Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019091159 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.437316991 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.408373393 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.393232222 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.401843981 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.383744562 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.380575874 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.383665644 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.38628988 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.385440755 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.38540237 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012435169 seconds Ending run at 05:25:40 UTC on 2024-10-18. Run time = 4.164185408 Run time without initialization = 3.965349173 Average number of zones advanced per microsecond: 0.661 Average number of zones advanced per microsecond per rank: 0.083 TinyProfiler total time across processes [min...avg...max]: 4.1629 ... 4.1639 ... 4.1642 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3795 2.6563 2.8377 68.14% check_for_negative_density() 10 0.01337 0.2004 0.4851 11.65% Gravity::make_radial_gravity() 21 0.2931 0.31 0.333 8.00% amrex::Copy() 193 0.09661 0.122 0.134 3.22% Castro::initData() 1 0.04966 0.08739 0.1195 2.87% FabArray::setVal() 143 0.09486 0.1049 0.1093 2.63% Castro::estTimeStep() 21 0.02192 0.05891 0.1011 2.43% FabArray::ParallelCopy_finish() 41 0.05735 0.06438 0.08458 2.03% FabArray::ParallelCopy_nowait() 41 0.06284 0.06899 0.07265 1.74% FillPatchIterator::Initialize 41 0.0465 0.05729 0.06527 1.57% Castro::reset_internal_energy(Fab) 1008 0.05148 0.0529 0.05463 1.31% Castro::normalize_species() 62 0.04402 0.04861 0.05136 1.23% StateData::FillBoundary(geom) 41 0.03781 0.04237 0.04657 1.12% Castro::construct_new_gravity_source() 10 0.03047 0.03313 0.03653 0.88% Castro::initialize_do_advance() 10 0.02338 0.02703 0.03105 0.75% Gravity::interpolate_monopole_grav() 21 0.02758 0.0288 0.0296 0.71% Castro::computeTemp() 63 0.02226 0.02373 0.02488 0.60% FabArray::Saxpy() 20 0.01938 0.02059 0.0224 0.54% FabArray::setDomainBndry() 41 0.01514 0.01854 0.01992 0.48% Castro::initialize_advance() 10 0.0157 0.01663 0.0183 0.44% Castro::construct_old_gravity_source() 10 0.01578 0.01661 0.01732 0.42% VisMF::Write(FabArray) 2 0.01143 0.01294 0.01671 0.40% MultiFab::contains_nan() 20 0.01288 0.01484 0.01658 0.40% Amr::writePlotFile() 2 0.01073 0.01287 0.0141 0.34% Castro::initMFs() 1 0.008507 0.009415 0.01146 0.28% Castro::construct_new_source() 50 0.007456 0.008993 0.0101 0.24% Castro::enforce_min_density() 62 0.007873 0.008652 0.009167 0.22% main() 1 0.005248 0.006233 0.006564 0.16% Gravity::get_new_grav_vector() 11 0.004186 0.00519 0.006007 0.14% Gravity::get_old_grav_vector() 10 0.003102 0.003365 0.003633 0.09% Amr::coarseTimeStep() 10 0.0007874 0.001668 0.002955 0.07% Castro::finalize_do_advance() 10 0.001082 0.00115 0.001187 0.03% AmrLevel::FillPatch() 41 0.0009323 0.001072 0.001172 0.03% Amr::timeStep() 10 0.0001479 0.0002623 0.0006548 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0003333 0.0003434 0.0003599 0.01% Castro::do_advance_ctu() 10 0.0001822 0.0002092 0.0002437 0.01% Castro::clean_state() 62 0.0001818 0.0002013 0.0002274 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001426 0.0001584 0.0001783 0.00% StateDataPhysBCFunct::() 41 0.0001327 0.000151 0.0001655 0.00% Castro::do_old_sources() 10 0.0001053 0.0001288 0.0001628 0.00% Castro::Castro() 1 6.499e-05 0.0001126 0.0001594 0.00% FabArray::ParallelCopy() 41 0.0001272 0.0001409 0.0001588 0.00% Castro::construct_old_source() 50 8.837e-05 0.0001112 0.0001382 0.00% FillPatchSingleLevel 41 9.854e-05 0.0001116 0.0001334 0.00% Castro::do_new_sources() 10 6.769e-05 7.971e-05 9.409e-05 0.00% Castro::apply_source_to_state() 20 6.629e-05 7.535e-05 9.19e-05 0.00% Amr::FinalizeInit() 1 4.238e-06 1.581e-05 8.635e-05 0.00% Castro::subcycle_advance_ctu() 10 6.273e-05 6.825e-05 7.96e-05 0.00% Amr::defBaseLevel() 1 4.462e-05 5.873e-05 6.656e-05 0.00% Castro::advance() 10 4.795e-05 5.646e-05 6.433e-05 0.00% Castro::construct_old_gravity() 10 3.988e-05 4.879e-05 6.359e-05 0.00% Castro::expand_state() 10 3.829e-05 5.114e-05 6.35e-05 0.00% Castro::construct_new_gravity() 10 3.13e-05 3.885e-05 5.115e-05 0.00% Castro::check_for_nan() 20 2.913e-05 3.469e-05 3.998e-05 0.00% Castro::post_timestep() 10 1.597e-05 2.052e-05 2.391e-05 0.00% Castro::post_init() 1 9.181e-06 1.251e-05 1.536e-05 0.00% Castro::computeNewDt() 9 8.554e-06 9.463e-06 1.111e-05 0.00% Amr::initialInit() 1 1.783e-06 3.199e-06 1.105e-05 0.00% Amr::InitializeInit() 1 2.626e-06 4.182e-06 1.043e-05 0.00% Castro::computeInitialDt() 2 4.412e-06 4.861e-06 5.395e-06 0.00% Amr::init() 1 2.116e-06 2.764e-06 3.97e-06 0.00% Other 199 0.01233 0.01551 0.01708 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.163 4.164 4.164 100.00% Amr::coarseTimeStep() 10 3.946 3.946 3.946 94.77% Amr::timeStep() 10 3.933 3.934 3.935 94.50% Castro::advance() 10 3.916 3.917 3.917 94.07% Castro::subcycle_advance_ctu() 10 3.803 3.807 3.812 91.53% Castro::do_advance_ctu() 10 3.803 3.807 3.812 91.53% Castro::construct_ctu_hydro_source() 10 2.876 2.88 2.887 69.34% check_for_negative_density() 10 0.01337 0.2004 0.4851 11.65% Gravity::make_radial_gravity() 21 0.318 0.3356 0.3558 8.55% AmrLevel::FillPatch() 41 0.2782 0.3035 0.3228 7.75% FillPatchIterator::Initialize 41 0.2351 0.2523 0.2633 6.32% Castro::initialize_do_advance() 10 0.2287 0.2436 0.2574 6.18% Gravity::get_new_grav_vector() 11 0.2317 0.2342 0.2357 5.66% Castro::construct_old_gravity() 10 0.1976 0.2102 0.2261 5.43% Gravity::get_old_grav_vector() 10 0.1964 0.2092 0.225 5.40% Castro::construct_new_gravity() 10 0.2046 0.206 0.2075 4.98% Amr::init() 1 0.1983 0.1985 0.1985 4.77% Castro::expand_state() 10 0.1522 0.1706 0.1874 4.50% FillPatchIterator::FillFromLevel0() 41 0.1669 0.1764 0.186 4.47% FillPatchSingleLevel 41 0.1667 0.1763 0.1859 4.46% Amr::initialInit() 1 0.179 0.1798 0.1799 4.32% Castro::do_old_sources() 10 0.1414 0.1454 0.1479 3.55% FabArray::ParallelCopy() 41 0.1262 0.1336 0.1478 3.55% Amr::InitializeInit() 1 0.07846 0.1158 0.1473 3.54% Amr::defBaseLevel() 1 0.07846 0.1158 0.1473 3.54% Castro::clean_state() 62 0.1296 0.1335 0.1368 3.29% amrex::Copy() 193 0.09661 0.122 0.134 3.22% Castro::initData() 1 0.05406 0.09248 0.1252 3.01% FabArray::setVal() 143 0.09486 0.1049 0.1093 2.63% Castro::initialize_advance() 10 0.1 0.1048 0.1088 2.61% Amr::FinalizeInit() 1 0.03257 0.06399 0.1014 2.44% Castro::estTimeStep() 21 0.02192 0.05891 0.1011 2.43% Castro::do_new_sources() 10 0.07675 0.08293 0.08819 2.12% FabArray::ParallelCopy_finish() 41 0.05735 0.06438 0.08458 2.03% Castro::computeTemp() 63 0.07468 0.07697 0.07986 1.92% FabArray::ParallelCopy_nowait() 41 0.06304 0.06912 0.07277 1.75% Castro::computeInitialDt() 2 0.002582 0.03407 0.07138 1.71% Castro::reset_internal_energy(MultiFab) 63 0.05183 0.05325 0.05498 1.32% Castro::reset_internal_energy(Fab) 1008 0.05148 0.0529 0.05463 1.31% Castro::normalize_species() 62 0.04402 0.04861 0.05136 1.23% StateDataPhysBCFunct::() 41 0.03795 0.04252 0.04673 1.12% Castro::construct_new_source() 50 0.03883 0.04212 0.04663 1.12% StateData::FillBoundary(geom) 41 0.03781 0.04237 0.04657 1.12% Castro::construct_new_gravity_source() 10 0.03047 0.03313 0.03653 0.88% Amr::writePlotFile() 2 0.03105 0.03121 0.03178 0.76% Castro::post_init() 1 0.0279 0.02938 0.02991 0.72% Gravity::interpolate_monopole_grav() 21 0.02758 0.0288 0.0296 0.71% Castro::finalize_do_advance() 10 0.01141 0.017 0.02541 0.61% Castro::apply_source_to_state() 20 0.01944 0.02067 0.02249 0.54% FabArray::Saxpy() 20 0.01938 0.02059 0.0224 0.54% FabArray::setDomainBndry() 41 0.01514 0.01854 0.01992 0.48% Castro::post_timestep() 10 0.01615 0.01734 0.01822 0.44% Castro::construct_old_source() 50 0.0159 0.01672 0.01743 0.42% Castro::Castro() 1 0.01501 0.01594 0.01738 0.42% Castro::construct_old_gravity_source() 10 0.01578 0.01661 0.01732 0.42% VisMF::Write(FabArray) 2 0.01143 0.01294 0.01671 0.40% Castro::check_for_nan() 20 0.01291 0.01488 0.01662 0.40% MultiFab::contains_nan() 20 0.01288 0.01484 0.01658 0.40% Castro::initMFs() 1 0.008507 0.009415 0.01146 0.28% Castro::enforce_min_density() 62 0.007873 0.008652 0.009167 0.22% Castro::computeNewDt() 9 0.008976 0.008997 0.009009 0.22% Other 199 0.02473 0.02959 0.03325 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 31 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6787 KiB 6791 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4568 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 251 KiB 277 KiB 298 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 18 KiB 20 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2818 KiB 2821 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 194 KiB 205 KiB 217 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 49 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 71 KiB 72 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 60 KiB 64 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-11-g62c2a81eac78) finalized