Initializing AMReX (24.10-14-g0c7df10b24b8)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-14-g0c7df10b24b8) initialized Starting run at 05:39:11 UTC on 2024-10-22. Successfully read inputs file ... Castro git describe: 24.10-5-g71b5b56cc AMReX git describe: 24.10-14-g0c7df10b2 Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014756704 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346466053 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343561425 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346784841 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.362333005 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363282657 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305977739 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305657905 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30497219 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.304971742 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305882306 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007798859 seconds Ending run at 05:39:14 UTC on 2024-10-22. Run time = 3.512712201 Run time without initialization = 3.302479657 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5119 ... 3.5125 ... 3.5128 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2456 2.3020 2.3406 66.63% Gravity::make_radial_gravity() 21 0.3065 0.3115 0.3241 9.23% check_for_negative_density() 10 0.05069 0.09049 0.1506 4.29% Castro::initData() 1 0.05615 0.09331 0.1422 4.05% Castro::estTimeStep() 21 0.04136 0.08925 0.1275 3.63% FabArray::ParallelCopy_finish() 41 0.05079 0.06886 0.1027 2.92% amrex::Copy() 193 0.06443 0.07917 0.08697 2.48% FabArray::setVal() 143 0.06043 0.06625 0.07703 2.19% FabArray::ParallelCopy_nowait() 41 0.03481 0.04201 0.05091 1.45% Castro::reset_internal_energy(Fab) 1008 0.04425 0.04634 0.04799 1.37% Castro::normalize_species() 62 0.0411 0.04228 0.04413 1.26% FillPatchIterator::Initialize 41 0.02834 0.03326 0.03611 1.03% StateData::FillBoundary(geom) 41 0.03242 0.03375 0.0348 0.99% Gravity::interpolate_monopole_grav() 21 0.02867 0.02948 0.03045 0.87% Castro::construct_new_gravity_source() 10 0.02273 0.02533 0.02903 0.83% Castro::computeTemp() 63 0.01931 0.02052 0.02172 0.62% Castro::initialize_do_advance() 10 0.01292 0.01743 0.02131 0.61% FabArray::Saxpy() 20 0.01111 0.01204 0.01291 0.37% VisMF::Write(FabArray) 2 0.008887 0.009897 0.0124 0.35% Castro::initialize_advance() 10 0.005409 0.009759 0.01237 0.35% Amr::writePlotFile() 2 0.007622 0.0102 0.01216 0.35% MultiFab::contains_nan() 20 0.009452 0.01001 0.01104 0.31% FabArray::setDomainBndry() 41 0.006849 0.009331 0.01054 0.30% Castro::initMFs() 1 0.006481 0.008617 0.01045 0.30% Castro::construct_old_gravity_source() 10 0.006416 0.008599 0.009203 0.26% Castro::construct_new_source() 50 0.005229 0.005801 0.006016 0.17% main() 1 0.003431 0.00404 0.004285 0.12% Gravity::get_new_grav_vector() 11 0.002923 0.003475 0.004151 0.12% Amr::coarseTimeStep() 10 0.00138 0.002404 0.003342 0.10% Gravity::get_old_grav_vector() 10 0.001617 0.002027 0.002476 0.07% AmrLevel::FillPatch() 41 0.000727 0.001059 0.001168 0.03% Castro::finalize_do_advance() 10 0.000748 0.001004 0.001098 0.03% Amr::timeStep() 10 0.0001653 0.0002174 0.0004378 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002774 0.000289 0.0002951 0.01% Castro::do_advance_ctu() 10 0.000125 0.000152 0.000183 0.01% StateDataPhysBCFunct::() 41 0.0001109 0.0001368 0.0001755 0.00% Castro::clean_state() 62 0.0001288 0.000144 0.0001633 0.00% FillPatchIterator::FillFromLevel0() 41 9.883e-05 0.0001137 0.0001262 0.00% FabArray::ParallelCopy() 41 8.149e-05 9.277e-05 0.0001048 0.00% Castro::do_old_sources() 10 6.108e-05 8.443e-05 0.000103 0.00% Castro::construct_old_source() 50 4.57e-05 7.047e-05 9.25e-05 0.00% Amr::FinalizeInit() 1 3.842e-06 1.52e-05 9.017e-05 0.00% FillPatchSingleLevel 41 6.927e-05 7.648e-05 8.198e-05 0.00% Castro::Castro() 1 5.729e-05 6.803e-05 8.056e-05 0.00% Amr::defBaseLevel() 1 4.689e-05 5.422e-05 6.702e-05 0.00% Castro::do_new_sources() 10 4.549e-05 5.743e-05 6.661e-05 0.00% Castro::subcycle_advance_ctu() 10 3.828e-05 4.922e-05 6.298e-05 0.00% Castro::advance() 10 3.717e-05 4.466e-05 5.217e-05 0.00% Castro::apply_source_to_state() 20 3.419e-05 4.288e-05 5.04e-05 0.00% Castro::construct_old_gravity() 10 3.004e-05 3.653e-05 4.503e-05 0.00% Castro::construct_new_gravity() 10 2.736e-05 3.347e-05 4.323e-05 0.00% Castro::check_for_nan() 20 2.353e-05 2.6e-05 2.921e-05 0.00% Castro::expand_state() 10 2.024e-05 2.426e-05 2.837e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.308e-06 1.475e-05 2.222e-05 0.00% Castro::post_timestep() 10 1.756e-05 1.958e-05 2.193e-05 0.00% Amr::InitializeInit() 1 2.85e-06 5.808e-06 2.187e-05 0.00% Castro::post_init() 1 8.848e-06 1.009e-05 1.362e-05 0.00% Castro::computeNewDt() 9 8.553e-06 9.422e-06 1.074e-05 0.00% Amr::init() 1 1.835e-06 3.892e-06 9.356e-06 0.00% Castro::computeInitialDt() 2 3.48e-06 3.961e-06 4.547e-06 0.00% Amr::initialInit() 1 1.629e-06 1.945e-06 2.34e-06 0.00% Other 260 0.01743 0.02112 0.02391 0.68% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.512 3.513 3.513 100.00% Amr::coarseTimeStep() 10 3.29 3.29 3.29 93.67% Amr::timeStep() 10 3.277 3.278 3.279 93.34% Castro::advance() 10 3.261 3.262 3.262 92.87% Castro::subcycle_advance_ctu() 10 3.181 3.19 3.196 90.98% Castro::do_advance_ctu() 10 3.181 3.19 3.196 90.98% Castro::construct_ctu_hydro_source() 10 2.411 2.413 2.417 68.80% Gravity::make_radial_gravity() 21 0.3232 0.3278 0.3372 9.60% AmrLevel::FillPatch() 41 0.2029 0.221 0.2317 6.60% Gravity::get_new_grav_vector() 11 0.2214 0.2243 0.229 6.52% Amr::init() 1 0.2095 0.2098 0.2099 5.97% FillPatchIterator::Initialize 41 0.1711 0.1877 0.2056 5.85% Castro::construct_new_gravity() 10 0.1979 0.2005 0.2054 5.85% Castro::construct_old_gravity() 10 0.1921 0.1965 0.2045 5.82% Gravity::get_old_grav_vector() 10 0.1909 0.1956 0.2034 5.79% Amr::initialInit() 1 0.1946 0.1949 0.1951 5.55% Castro::initialize_do_advance() 10 0.1685 0.1767 0.1842 5.24% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1451 0.1704 4.85% FillPatchSingleLevel 41 0.1252 0.145 0.1703 4.85% Amr::InitializeInit() 1 0.08286 0.1168 0.1674 4.77% Amr::defBaseLevel() 1 0.08286 0.1167 0.1674 4.76% check_for_negative_density() 10 0.05069 0.09049 0.1506 4.29% Castro::initData() 1 0.05978 0.09697 0.1459 4.15% FabArray::ParallelCopy() 41 0.09121 0.1111 0.1376 3.92% Castro::expand_state() 10 0.1087 0.1231 0.1332 3.79% Castro::estTimeStep() 21 0.04136 0.08925 0.1275 3.63% Castro::clean_state() 62 0.1118 0.1159 0.1209 3.44% Amr::FinalizeInit() 1 0.02756 0.07813 0.1119 3.19% FabArray::ParallelCopy_finish() 41 0.05079 0.06886 0.1027 2.92% Castro::do_old_sources() 10 0.08854 0.09421 0.09722 2.77% amrex::Copy() 193 0.06443 0.07917 0.08697 2.48% Castro::computeInitialDt() 2 0.002232 0.05288 0.08676 2.47% Castro::initialize_advance() 10 0.06183 0.06784 0.07752 2.21% FabArray::setVal() 143 0.06043 0.06625 0.07703 2.19% Castro::do_new_sources() 10 0.05805 0.06579 0.07637 2.17% Castro::computeTemp() 63 0.06397 0.06715 0.07 1.99% FabArray::ParallelCopy_nowait() 41 0.03489 0.0421 0.051 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04454 0.04663 0.04829 1.37% Castro::reset_internal_energy(Fab) 1008 0.04425 0.04634 0.04799 1.37% Castro::normalize_species() 62 0.0411 0.04228 0.04413 1.26% Castro::finalize_do_advance() 10 0.013 0.02825 0.03867 1.10% Castro::construct_new_source() 50 0.02843 0.03113 0.03499 1.00% StateDataPhysBCFunct::() 41 0.03258 0.03389 0.03492 0.99% StateData::FillBoundary(geom) 41 0.03242 0.03375 0.0348 0.99% Gravity::interpolate_monopole_grav() 21 0.02867 0.02948 0.03045 0.87% Castro::construct_new_gravity_source() 10 0.02273 0.02533 0.02903 0.83% Castro::post_init() 1 0.02441 0.02475 0.02495 0.71% Amr::writePlotFile() 2 0.02268 0.02277 0.0231 0.66% Castro::post_timestep() 10 0.0154 0.01598 0.01635 0.47% Castro::Castro() 1 0.009284 0.01232 0.01471 0.42% Castro::apply_source_to_state() 20 0.01114 0.01209 0.01295 0.37% FabArray::Saxpy() 20 0.01111 0.01204 0.01291 0.37% VisMF::Write(FabArray) 2 0.008887 0.009897 0.0124 0.35% Castro::check_for_nan() 20 0.009481 0.01004 0.01107 0.31% MultiFab::contains_nan() 20 0.009452 0.01001 0.01104 0.31% FabArray::setDomainBndry() 41 0.006849 0.009331 0.01054 0.30% Castro::initMFs() 1 0.006481 0.008617 0.01045 0.30% Castro::construct_old_source() 50 0.006461 0.008669 0.009271 0.26% Castro::construct_old_gravity_source() 10 0.006416 0.008599 0.009203 0.26% Castro::computeNewDt() 9 0.009103 0.009136 0.009165 0.26% AmrLevel::AmrLevel(dm) 1 0.00551 0.007068 0.008342 0.24% Other 260 0.0221 0.02668 0.03029 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 40 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8652 KiB 8666 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6703 KiB 6709 KiB 6713 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4522 KiB 4537 KiB 4547 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 235 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2782 KiB 2785 KiB 2786 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 237 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 48 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-14-g0c7df10b24b8) finalized