Initializing AMReX (24.10-16-gc0602940a47c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-16-gc0602940a47c) initialized Starting run at 05:45:00 UTC on 2024-10-23. Successfully read inputs file ... Castro git describe: 24.10-6-gb6503500c AMReX git describe: 24.10-16-gc0602940a Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019585939 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.556761246 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.413729297 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.385301299 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.36492308 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.346936555 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.340877259 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.329069363 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.324323223 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.319752616 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.330569643 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008411528 seconds Ending run at 05:45:04 UTC on 2024-10-23. Run time = 4.000967309 Run time without initialization = 3.727011894 Average number of zones advanced per microsecond: 0.703 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.9986 ... 4.0006 ... 4.0010 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3974 2.4852 2.7048 67.60% Gravity::make_radial_gravity() 21 0.3323 0.3464 0.3608 9.02% check_for_negative_density() 10 0.04037 0.2641 0.3572 8.93% Castro::initData() 1 0.07673 0.1187 0.1792 4.48% Castro::estTimeStep() 21 0.04582 0.1017 0.1588 3.97% FabArray::ParallelCopy_finish() 41 0.04263 0.08085 0.1124 2.81% amrex::Copy() 193 0.06674 0.08236 0.09874 2.47% FabArray::setVal() 143 0.05675 0.07327 0.08516 2.13% Castro::reset_internal_energy(Fab) 1008 0.04806 0.05107 0.05335 1.33% Castro::normalize_species() 62 0.04308 0.04564 0.04923 1.23% FabArray::ParallelCopy_nowait() 41 0.03666 0.04173 0.04539 1.13% FillPatchIterator::Initialize 41 0.03192 0.03461 0.04182 1.05% StateData::FillBoundary(geom) 41 0.03372 0.03661 0.03907 0.98% Gravity::interpolate_monopole_grav() 21 0.02853 0.0306 0.03233 0.81% Castro::construct_new_gravity_source() 10 0.02279 0.02641 0.02987 0.75% Castro::initialize_do_advance() 10 0.01554 0.01914 0.02578 0.64% Castro::computeTemp() 63 0.02129 0.02264 0.02385 0.60% Amr::writePlotFile() 2 0.009655 0.01374 0.01646 0.41% VisMF::Write(FabArray) 2 0.009572 0.01117 0.01597 0.40% FabArray::Saxpy() 20 0.01031 0.01286 0.01542 0.39% Castro::initialize_advance() 10 0.008174 0.01162 0.01452 0.36% FabArray::setDomainBndry() 41 0.009008 0.01054 0.0124 0.31% MultiFab::contains_nan() 20 0.009666 0.01057 0.01149 0.29% Castro::initMFs() 1 0.006529 0.008855 0.01139 0.28% Castro::construct_old_gravity_source() 10 0.007549 0.00882 0.01014 0.25% Amr::coarseTimeStep() 10 0.001667 0.006116 0.008184 0.20% Castro::construct_new_source() 50 0.005415 0.006135 0.006641 0.17% Gravity::get_new_grav_vector() 11 0.003472 0.004329 0.006193 0.15% main() 1 0.003284 0.005339 0.005764 0.14% Gravity::get_old_grav_vector() 10 0.001898 0.002125 0.002684 0.07% AmrLevel::FillPatch() 41 0.000856 0.0009957 0.001392 0.03% Castro::finalize_do_advance() 10 0.0007549 0.001057 0.001164 0.03% Castro::do_advance_ctu() 10 0.0001652 0.0002856 0.00104 0.03% Amr::timeStep() 10 0.0002052 0.0002403 0.0004074 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003038 0.0003253 0.0003506 0.01% Castro::clean_state() 62 0.0001517 0.000195 0.0002342 0.01% StateDataPhysBCFunct::() 41 0.0001156 0.0001255 0.0001435 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001038 0.000119 0.000134 0.00% Castro::do_old_sources() 10 7.518e-05 8.795e-05 0.0001171 0.00% FabArray::ParallelCopy() 41 9.953e-05 0.000106 0.000112 0.00% FillPatchSingleLevel 41 8.175e-05 8.752e-05 0.0001045 0.00% Castro::Castro() 1 5.975e-05 7.822e-05 0.0001043 0.00% Amr::FinalizeInit() 1 5.437e-06 1.707e-05 8.381e-05 0.00% Amr::defBaseLevel() 1 5.396e-05 6.46e-05 8.352e-05 0.00% Castro::construct_old_source() 50 5.66e-05 6.859e-05 7.954e-05 0.00% Castro::do_new_sources() 10 4.753e-05 5.963e-05 6.876e-05 0.00% Castro::apply_source_to_state() 20 4.291e-05 4.711e-05 6.348e-05 0.00% Castro::subcycle_advance_ctu() 10 4.665e-05 5.46e-05 6.263e-05 0.00% Castro::advance() 10 4.368e-05 4.953e-05 5.691e-05 0.00% Castro::construct_old_gravity() 10 3.566e-05 3.859e-05 4.424e-05 0.00% Castro::construct_new_gravity() 10 3.144e-05 3.555e-05 4.402e-05 0.00% Castro::expand_state() 10 2.304e-05 2.898e-05 3.354e-05 0.00% Castro::check_for_nan() 20 2.652e-05 2.947e-05 3.301e-05 0.00% Castro::post_init() 1 1.129e-05 1.705e-05 2.822e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.164e-05 1.672e-05 2.576e-05 0.00% Castro::post_timestep() 10 1.822e-05 1.981e-05 2.335e-05 0.00% Amr::init() 1 2.275e-06 4.107e-06 1.407e-05 0.00% Castro::computeNewDt() 9 9.767e-06 1.061e-05 1.156e-05 0.00% Amr::InitializeInit() 1 3.4e-06 4.714e-06 8.085e-06 0.00% Castro::computeInitialDt() 2 4.626e-06 5.383e-06 7.544e-06 0.00% Amr::initialInit() 1 1.949e-06 2.367e-06 3.355e-06 0.00% Other 260 0.01828 0.02294 0.02802 0.70% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.999 4.001 4.001 100.00% Amr::coarseTimeStep() 10 3.713 3.713 3.713 92.80% Amr::timeStep() 10 3.693 3.695 3.7 92.47% Castro::advance() 10 3.677 3.678 3.68 91.97% Castro::subcycle_advance_ctu() 10 3.587 3.598 3.611 90.26% Castro::do_advance_ctu() 10 3.587 3.598 3.611 90.26% Castro::construct_ctu_hydro_source() 10 2.768 2.773 2.776 69.37% Gravity::make_radial_gravity() 21 0.3504 0.3635 0.3757 9.39% check_for_negative_density() 10 0.04037 0.2641 0.3572 8.93% Amr::init() 1 0.2734 0.2735 0.2736 6.84% AmrLevel::FillPatch() 41 0.2198 0.2385 0.2558 6.39% Amr::initialInit() 1 0.2536 0.2543 0.2548 6.37% Gravity::get_new_grav_vector() 11 0.2407 0.2428 0.2455 6.14% FillPatchIterator::Initialize 41 0.1798 0.2049 0.2261 5.65% Castro::construct_old_gravity() 10 0.2071 0.2163 0.2238 5.59% Gravity::get_old_grav_vector() 10 0.2058 0.2156 0.2232 5.58% Amr::InitializeInit() 1 0.09605 0.1442 0.2103 5.26% Amr::defBaseLevel() 1 0.09605 0.1442 0.2103 5.26% Castro::construct_new_gravity() 10 0.2029 0.2047 0.2064 5.16% Castro::initialize_do_advance() 10 0.1836 0.1906 0.1986 4.96% Castro::initData() 1 0.08062 0.1238 0.1849 4.62% FillPatchIterator::FillFromLevel0() 41 0.1256 0.1597 0.1843 4.61% FillPatchSingleLevel 41 0.1255 0.1596 0.1842 4.60% Castro::estTimeStep() 21 0.04582 0.1017 0.1588 3.97% Amr::FinalizeInit() 1 0.04425 0.1101 0.1582 3.95% FabArray::ParallelCopy() 41 0.08622 0.1228 0.1493 3.73% Castro::expand_state() 10 0.1238 0.133 0.1456 3.64% Castro::clean_state() 62 0.1198 0.1265 0.1337 3.34% Castro::computeInitialDt() 2 0.003911 0.07014 0.1183 2.96% FabArray::ParallelCopy_finish() 41 0.04263 0.08085 0.1124 2.81% Castro::do_old_sources() 10 0.1021 0.1038 0.1059 2.65% amrex::Copy() 193 0.06674 0.08236 0.09874 2.47% Castro::initialize_advance() 10 0.06274 0.07615 0.08733 2.18% FabArray::setVal() 143 0.05675 0.07327 0.08516 2.13% Castro::do_new_sources() 10 0.05979 0.06969 0.079 1.97% Castro::computeTemp() 63 0.06966 0.07404 0.07731 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04837 0.0514 0.05368 1.34% Castro::reset_internal_energy(Fab) 1008 0.04806 0.05107 0.05335 1.33% Castro::normalize_species() 62 0.04308 0.04564 0.04923 1.23% FabArray::ParallelCopy_nowait() 41 0.03677 0.04183 0.04548 1.14% Castro::post_init() 1 0.03862 0.03933 0.03993 1.00% StateDataPhysBCFunct::() 41 0.03384 0.03674 0.0392 0.98% StateData::FillBoundary(geom) 41 0.03372 0.03661 0.03907 0.98% Castro::construct_new_source() 50 0.02821 0.03255 0.03638 0.91% Castro::finalize_do_advance() 10 0.01306 0.02315 0.03382 0.85% Gravity::interpolate_monopole_grav() 21 0.02853 0.0306 0.03233 0.81% Castro::construct_new_gravity_source() 10 0.02279 0.02641 0.02987 0.75% Amr::writePlotFile() 2 0.02715 0.02771 0.02826 0.71% Castro::post_timestep() 10 0.01615 0.01709 0.02002 0.50% Castro::Castro() 1 0.009292 0.01268 0.01604 0.40% VisMF::Write(FabArray) 2 0.009572 0.01117 0.01597 0.40% Castro::apply_source_to_state() 20 0.01036 0.01291 0.01548 0.39% FabArray::Saxpy() 20 0.01031 0.01286 0.01542 0.39% FabArray::setDomainBndry() 41 0.009008 0.01054 0.0124 0.31% Castro::check_for_nan() 20 0.009697 0.0106 0.01153 0.29% MultiFab::contains_nan() 20 0.009666 0.01057 0.01149 0.29% Castro::initMFs() 1 0.006529 0.008855 0.01139 0.28% Castro::construct_old_source() 50 0.007611 0.008889 0.01022 0.26% Castro::construct_old_gravity_source() 10 0.007549 0.00882 0.01014 0.25% Castro::computeNewDt() 9 0.009521 0.009535 0.00955 0.24% AmrLevel::AmrLevel(dm) 1 0.005828 0.007491 0.00938 0.23% Other 260 0.02297 0.0297 0.03705 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 43 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8667 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6640 KiB 6644 KiB 6647 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4479 KiB 4493 KiB 4510 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 224 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2755 KiB 2757 KiB 2759 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 231 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 32 KiB 47 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 69 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-16-gc0602940a47c) finalized