Initializing AMReX (24.10-18-g92679babfc2c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-18-g92679babfc2c) initialized Starting run at 05:28:17 UTC on 2024-10-24. Successfully read inputs file ... Castro git describe: 24.10-7-g1686df30a AMReX git describe: 24.10-18-g92679babf Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014886435 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.373943888 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346658958 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.344379235 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.373744505 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.339147136 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309358567 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.306988795 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307928367 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30697831 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307354593 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008025982 seconds Ending run at 05:28:21 UTC on 2024-10-24. Run time = 3.53627744 Run time without initialization = 3.32918654 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5361 ... 3.5362 ... 3.5363 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2680 2.3361 2.3696 67.01% Gravity::make_radial_gravity() 21 0.2928 0.3088 0.3288 9.30% check_for_negative_density() 10 0.05482 0.08966 0.1627 4.60% Castro::initData() 1 0.05109 0.09143 0.1418 4.01% Castro::estTimeStep() 21 0.03486 0.08253 0.1286 3.64% FabArray::ParallelCopy_finish() 41 0.03982 0.05805 0.09211 2.60% amrex::Copy() 193 0.061 0.07967 0.08869 2.51% FabArray::setVal() 143 0.06247 0.06954 0.0804 2.27% Castro::reset_internal_energy(Fab) 1008 0.04682 0.04903 0.0559 1.58% Castro::normalize_species() 62 0.04266 0.04331 0.04417 1.25% FabArray::ParallelCopy_nowait() 41 0.03365 0.04131 0.04316 1.22% FillPatchIterator::Initialize 41 0.02888 0.03459 0.03689 1.04% StateData::FillBoundary(geom) 41 0.03156 0.03452 0.0365 1.03% Gravity::interpolate_monopole_grav() 21 0.02862 0.03014 0.03224 0.91% Castro::construct_new_gravity_source() 10 0.02425 0.02641 0.02902 0.82% Castro::computeTemp() 63 0.02067 0.02137 0.0227 0.64% Castro::initialize_do_advance() 10 0.01345 0.01778 0.021 0.59% FabArray::Saxpy() 20 0.01147 0.01275 0.01352 0.38% FabArray::setDomainBndry() 41 0.007245 0.01069 0.01317 0.37% Amr::writePlotFile() 2 0.008052 0.01068 0.01269 0.36% VisMF::Write(FabArray) 2 0.008961 0.009755 0.01238 0.35% Castro::initialize_advance() 10 0.005607 0.009777 0.01223 0.35% MultiFab::contains_nan() 20 0.009496 0.01032 0.01154 0.33% Castro::construct_old_gravity_source() 10 0.006454 0.008864 0.009499 0.27% Castro::enforce_min_density() 62 0.007157 0.007381 0.007827 0.22% Castro::construct_new_source() 50 0.005297 0.005994 0.006182 0.17% Gravity::get_new_grav_vector() 11 0.003084 0.003881 0.005917 0.17% main() 1 0.003824 0.004012 0.004095 0.12% Gravity::get_old_grav_vector() 10 0.001431 0.002146 0.002459 0.07% Amr::coarseTimeStep() 10 0.001353 0.001907 0.002231 0.06% Castro::finalize_do_advance() 10 0.0005003 0.0009985 0.001101 0.03% AmrLevel::FillPatch() 41 0.0009255 0.0009903 0.001066 0.03% Amr::timeStep() 10 0.0001732 0.0002307 0.000474 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002824 0.0003074 0.0003931 0.01% Castro::do_advance_ctu() 10 0.0001306 0.0001603 0.0002152 0.01% Castro::clean_state() 62 0.0001401 0.0001534 0.0001706 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001007 0.0001133 0.0001305 0.00% Castro::Castro() 1 6.659e-05 8.665e-05 0.0001261 0.00% StateDataPhysBCFunct::() 41 9.344e-05 0.0001149 0.0001255 0.00% FabArray::ParallelCopy() 41 8.442e-05 9.859e-05 0.000114 0.00% Amr::FinalizeInit() 1 3.497e-06 1.593e-05 9.745e-05 0.00% Castro::do_old_sources() 10 6.532e-05 8.499e-05 9.734e-05 0.00% FillPatchSingleLevel 41 7.484e-05 8.036e-05 9.071e-05 0.00% Castro::construct_old_source() 50 5.353e-05 7.302e-05 8.17e-05 0.00% Castro::do_new_sources() 10 5.216e-05 6.047e-05 7.113e-05 0.00% Amr::defBaseLevel() 1 4.504e-05 5.583e-05 6.542e-05 0.00% Castro::advance() 10 4.176e-05 4.859e-05 5.973e-05 0.00% Castro::subcycle_advance_ctu() 10 4.109e-05 4.984e-05 5.906e-05 0.00% Castro::apply_source_to_state() 20 3.481e-05 4.52e-05 5.209e-05 0.00% Castro::construct_new_gravity() 10 3.026e-05 3.889e-05 5.051e-05 0.00% Castro::construct_old_gravity() 10 3.222e-05 3.871e-05 4.7e-05 0.00% Castro::check_for_nan() 20 2.322e-05 2.888e-05 3.665e-05 0.00% Castro::expand_state() 10 2.162e-05 2.409e-05 2.565e-05 0.00% Castro::post_timestep() 10 1.758e-05 2.095e-05 2.339e-05 0.00% Castro::post_init() 1 8.174e-06 1.007e-05 1.45e-05 0.00% Castro::computeNewDt() 9 8.442e-06 9.052e-06 9.815e-06 0.00% Amr::init() 1 1.74e-06 2.972e-06 8.482e-06 0.00% Amr::InitializeInit() 1 2.802e-06 4.027e-06 6.001e-06 0.00% Castro::computeInitialDt() 2 3.356e-06 4.049e-06 5.062e-06 0.00% Amr::initialInit() 1 1.345e-06 1.948e-06 2.715e-06 0.00% Other 200 0.01704 0.01983 0.0215 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.536 3.536 3.536 100.00% Amr::coarseTimeStep() 10 3.317 3.317 3.317 93.80% Amr::timeStep() 10 3.305 3.305 3.306 93.48% Castro::advance() 10 3.288 3.288 3.289 93.02% Castro::subcycle_advance_ctu() 10 3.206 3.214 3.221 91.09% Castro::do_advance_ctu() 10 3.206 3.214 3.221 91.09% Castro::construct_ctu_hydro_source() 10 2.444 2.448 2.454 69.41% Gravity::make_radial_gravity() 21 0.3101 0.3259 0.342 9.67% Gravity::get_new_grav_vector() 11 0.2232 0.2316 0.2341 6.62% AmrLevel::FillPatch() 41 0.2004 0.2126 0.2246 6.35% Castro::construct_new_gravity() 10 0.2 0.2079 0.2106 5.95% Amr::init() 1 0.2065 0.2067 0.2068 5.85% Castro::construct_old_gravity() 10 0.1822 0.1863 0.1976 5.59% Gravity::get_old_grav_vector() 10 0.1814 0.1854 0.1966 5.56% FillPatchIterator::Initialize 41 0.1659 0.1797 0.1939 5.48% Amr::initialInit() 1 0.1913 0.1917 0.1919 5.43% Castro::initialize_do_advance() 10 0.1656 0.1738 0.1813 5.13% Amr::InitializeInit() 1 0.07263 0.1134 0.1644 4.65% Amr::defBaseLevel() 1 0.07263 0.1134 0.1644 4.65% check_for_negative_density() 10 0.05482 0.08966 0.1627 4.60% FillPatchIterator::FillFromLevel0() 41 0.1181 0.1344 0.1578 4.46% FillPatchSingleLevel 41 0.118 0.1343 0.1577 4.46% Castro::initData() 1 0.05543 0.09549 0.1459 4.13% Castro::estTimeStep() 21 0.03486 0.08253 0.1286 3.64% Castro::clean_state() 62 0.1173 0.1206 0.1283 3.63% Castro::expand_state() 10 0.109 0.1185 0.1271 3.59% FabArray::ParallelCopy() 41 0.08175 0.09955 0.1259 3.56% Amr::FinalizeInit() 1 0.02688 0.07831 0.1189 3.36% Castro::do_old_sources() 10 0.0891 0.09283 0.09585 2.71% Castro::computeInitialDt() 2 0.002212 0.05317 0.09383 2.65% FabArray::ParallelCopy_finish() 41 0.03982 0.05805 0.09211 2.60% amrex::Copy() 193 0.061 0.07967 0.08869 2.51% FabArray::setVal() 143 0.06247 0.06954 0.0804 2.27% Castro::computeTemp() 63 0.06777 0.07071 0.07899 2.23% Castro::initialize_advance() 10 0.06273 0.07023 0.07834 2.22% Castro::do_new_sources() 10 0.06389 0.0688 0.07679 2.17% Castro::reset_internal_energy(MultiFab) 63 0.0471 0.04934 0.05629 1.59% Castro::reset_internal_energy(Fab) 1008 0.04682 0.04903 0.0559 1.58% Castro::normalize_species() 62 0.04266 0.04331 0.04417 1.25% FabArray::ParallelCopy_nowait() 41 0.03373 0.04141 0.04326 1.22% StateDataPhysBCFunct::() 41 0.03166 0.03464 0.03661 1.04% StateData::FillBoundary(geom) 41 0.03156 0.03452 0.0365 1.03% Castro::construct_new_source() 50 0.03031 0.0324 0.0352 1.00% Gravity::interpolate_monopole_grav() 21 0.02862 0.03014 0.03224 0.91% Castro::construct_new_gravity_source() 10 0.02425 0.02641 0.02902 0.82% Castro::finalize_do_advance() 10 0.01247 0.02131 0.02678 0.76% Castro::post_init() 1 0.02433 0.02459 0.0248 0.70% Amr::writePlotFile() 2 0.02293 0.02307 0.02353 0.67% Castro::post_timestep() 10 0.0161 0.01638 0.01661 0.47% Castro::apply_source_to_state() 20 0.0115 0.0128 0.01356 0.38% FabArray::Saxpy() 20 0.01147 0.01275 0.01352 0.38% FabArray::setDomainBndry() 41 0.007245 0.01069 0.01317 0.37% VisMF::Write(FabArray) 2 0.008961 0.009755 0.01238 0.35% Castro::Castro() 1 0.009752 0.01155 0.01234 0.35% Castro::check_for_nan() 20 0.009522 0.01035 0.01158 0.33% MultiFab::contains_nan() 20 0.009496 0.01032 0.01154 0.33% Castro::construct_old_source() 50 0.006508 0.008937 0.00958 0.27% Castro::construct_old_gravity_source() 10 0.006454 0.008864 0.009499 0.27% Castro::computeNewDt() 9 0.009049 0.009063 0.009073 0.26% Castro::enforce_min_density() 62 0.007157 0.007381 0.007827 0.22% Other 200 0.02739 0.03172 0.03471 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6714 KiB 6720 KiB 6723 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4531 KiB 4541 KiB 4552 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 224 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2786 KiB 2789 KiB 2790 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 235 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 42 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 84 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 67 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-18-g92679babfc2c) finalized