Initializing AMReX (24.10-18-g92679babfc2c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-18-g92679babfc2c) initialized Starting run at 05:27:59 UTC on 2024-10-25. Successfully read inputs file ... Castro git describe: 24.10-9-gdb92cbae3 AMReX git describe: 24.10-18-g92679babf Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.060803119 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355771365 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347510942 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321825379 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320622567 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.375186876 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311213431 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305637186 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305573082 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307223569 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305446268 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00772632 seconds Ending run at 05:28:02 UTC on 2024-10-25. Run time = 3.511996949 Run time without initialization = 3.269643815 Average number of zones advanced per microsecond: 0.802 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.5108 ... 3.5113 ... 3.5121 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2670 2.2947 2.3301 66.34% Gravity::make_radial_gravity() 21 0.2917 0.2991 0.3122 8.89% check_for_negative_density() 10 0.06342 0.1043 0.135 3.84% Castro::initData() 1 0.0475 0.08649 0.1333 3.80% Castro::estTimeStep() 21 0.03228 0.07687 0.1173 3.34% FabArray::ParallelCopy_finish() 41 0.04156 0.05698 0.1029 2.93% amrex::Copy() 193 0.06707 0.08045 0.09495 2.70% FabArray::setVal() 143 0.04995 0.0646 0.07212 2.05% VisMF::Write(FabArray) 2 0.05547 0.05612 0.05848 1.66% Castro::reset_internal_energy(Fab) 1008 0.04406 0.04596 0.04814 1.37% Castro::normalize_species() 62 0.04136 0.0418 0.04274 1.22% FabArray::ParallelCopy_nowait() 41 0.0359 0.04056 0.04214 1.20% StateData::FillBoundary(geom) 41 0.03028 0.03282 0.03545 1.01% FillPatchIterator::Initialize 41 0.02735 0.03214 0.03484 0.99% Gravity::interpolate_monopole_grav() 21 0.0273 0.02938 0.03127 0.89% Castro::construct_new_gravity_source() 10 0.0232 0.02443 0.02666 0.76% Castro::computeTemp() 63 0.0193 0.02043 0.02149 0.61% Castro::initialize_do_advance() 10 0.01175 0.01604 0.01731 0.49% Castro::initialize_advance() 10 0.005286 0.01068 0.01351 0.38% FabArray::Saxpy() 20 0.01037 0.01196 0.01318 0.38% FabArray::setDomainBndry() 41 0.007086 0.009517 0.01184 0.34% MultiFab::contains_nan() 20 0.009308 0.01012 0.01117 0.32% Amr::writePlotFile() 2 0.007623 0.01017 0.01109 0.32% Castro::construct_old_gravity_source() 10 0.006603 0.008912 0.009647 0.27% Castro::initMFs() 1 0.006393 0.006879 0.008291 0.24% Castro::construct_new_source() 50 0.005837 0.006104 0.006397 0.18% main() 1 0.003758 0.004306 0.005104 0.15% Gravity::get_new_grav_vector() 11 0.002834 0.003386 0.003688 0.10% Amr::coarseTimeStep() 10 0.001213 0.002275 0.00302 0.09% Gravity::get_old_grav_vector() 10 0.001659 0.002039 0.002533 0.07% Castro::finalize_do_advance() 10 0.000517 0.0009577 0.001116 0.03% AmrLevel::FillPatch() 41 0.0008006 0.0009776 0.001085 0.03% Amr::timeStep() 10 0.0001728 0.0002161 0.0003875 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002791 0.0002915 0.0003185 0.01% Castro::clean_state() 62 0.0001292 0.0001554 0.0001819 0.01% Castro::do_advance_ctu() 10 0.0001425 0.0001515 0.0001704 0.00% FillPatchIterator::FillFromLevel0() 41 8.821e-05 0.0001076 0.0001388 0.00% StateDataPhysBCFunct::() 41 0.0001059 0.0001163 0.0001299 0.00% Castro::do_old_sources() 10 7.459e-05 8.91e-05 0.0001107 0.00% Castro::Castro() 1 5.134e-05 8.208e-05 0.0001055 0.00% Amr::FinalizeInit() 1 3.69e-06 1.726e-05 0.0001026 0.00% FabArray::ParallelCopy() 41 8.146e-05 9.16e-05 9.942e-05 0.00% FillPatchSingleLevel 41 7.375e-05 8.026e-05 8.667e-05 0.00% Castro::construct_old_source() 50 5.692e-05 6.952e-05 8.156e-05 0.00% Castro::do_new_sources() 10 4.492e-05 5.963e-05 7.408e-05 0.00% Castro::subcycle_advance_ctu() 10 4.713e-05 5.259e-05 6.947e-05 0.00% Amr::defBaseLevel() 1 4.234e-05 5.49e-05 6.458e-05 0.00% Castro::construct_old_gravity() 10 3.188e-05 3.824e-05 5.278e-05 0.00% Castro::apply_source_to_state() 20 3.585e-05 4.462e-05 5.2e-05 0.00% Castro::advance() 10 3.935e-05 4.342e-05 4.673e-05 0.00% Castro::construct_new_gravity() 10 2.972e-05 3.501e-05 4.306e-05 0.00% Castro::expand_state() 10 2.3e-05 2.773e-05 4.217e-05 0.00% Castro::check_for_nan() 20 2.485e-05 2.613e-05 2.75e-05 0.00% Castro::post_timestep() 10 1.697e-05 1.812e-05 2.093e-05 0.00% Amr::init() 1 2.09e-06 5.036e-06 1.815e-05 0.00% Castro::post_init() 1 8.724e-06 9.917e-06 1.15e-05 0.00% Castro::computeNewDt() 9 7.707e-06 8.557e-06 9.48e-06 0.00% Amr::InitializeInit() 1 2.471e-06 3.663e-06 6.462e-06 0.00% Castro::computeInitialDt() 2 3.519e-06 4.139e-06 4.862e-06 0.00% Amr::initialInit() 1 1.458e-06 1.785e-06 2.41e-06 0.00% Other 261 0.01572 0.01792 0.01985 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.511 3.511 3.512 100.00% Amr::coarseTimeStep() 10 3.257 3.257 3.257 92.73% Amr::timeStep() 10 3.244 3.245 3.246 92.41% Castro::advance() 10 3.228 3.229 3.229 91.94% Castro::subcycle_advance_ctu() 10 3.154 3.158 3.173 90.36% Castro::do_advance_ctu() 10 3.154 3.158 3.173 90.35% Castro::construct_ctu_hydro_source() 10 2.412 2.419 2.423 69.00% Gravity::make_radial_gravity() 21 0.3084 0.3153 0.325 9.25% Amr::init() 1 0.2418 0.242 0.242 6.89% AmrLevel::FillPatch() 41 0.1855 0.2045 0.235 6.69% Gravity::get_new_grav_vector() 11 0.2065 0.2081 0.2094 5.96% FillPatchIterator::Initialize 41 0.1545 0.1725 0.2059 5.86% Castro::construct_old_gravity() 10 0.1895 0.194 0.2033 5.79% Gravity::get_old_grav_vector() 10 0.1889 0.1933 0.2026 5.77% Castro::construct_new_gravity() 10 0.1849 0.1858 0.1874 5.34% Amr::initialInit() 1 0.1805 0.1809 0.1811 5.16% FillPatchIterator::FillFromLevel0() 41 0.1152 0.1308 0.1715 4.88% FillPatchSingleLevel 41 0.1151 0.1307 0.1714 4.88% Castro::initialize_do_advance() 10 0.1535 0.1603 0.1666 4.74% Amr::InitializeInit() 1 0.06797 0.107 0.1549 4.41% Amr::defBaseLevel() 1 0.06797 0.107 0.1549 4.41% FabArray::ParallelCopy() 41 0.08356 0.09772 0.139 3.96% Castro::initData() 1 0.05141 0.09026 0.1367 3.89% check_for_negative_density() 10 0.06342 0.1043 0.135 3.84% Castro::expand_state() 10 0.09972 0.1082 0.1191 3.39% Castro::clean_state() 62 0.1105 0.1138 0.1184 3.37% Castro::estTimeStep() 21 0.03228 0.07687 0.1173 3.34% Amr::FinalizeInit() 1 0.02555 0.07389 0.1131 3.22% Castro::do_old_sources() 10 0.09217 0.09965 0.1113 3.17% FabArray::ParallelCopy_finish() 41 0.04156 0.05698 0.1029 2.93% amrex::Copy() 193 0.06707 0.08045 0.09495 2.70% Castro::computeInitialDt() 2 0.002141 0.05001 0.08908 2.54% FabArray::setVal() 143 0.04995 0.0646 0.07212 2.05% Castro::initialize_advance() 10 0.05145 0.06688 0.07175 2.04% Castro::computeTemp() 63 0.06364 0.06668 0.06993 1.99% Amr::writePlotFile() 2 0.06877 0.06888 0.06935 1.97% Castro::do_new_sources() 10 0.05879 0.06254 0.0683 1.94% VisMF::Write(FabArray) 2 0.05547 0.05612 0.05848 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04434 0.04625 0.04844 1.38% Castro::reset_internal_energy(Fab) 1008 0.04406 0.04596 0.04814 1.37% Castro::normalize_species() 62 0.04136 0.0418 0.04274 1.22% FabArray::ParallelCopy_nowait() 41 0.03599 0.04065 0.04222 1.20% StateDataPhysBCFunct::() 41 0.0304 0.03294 0.03556 1.01% StateData::FillBoundary(geom) 41 0.03028 0.03282 0.03545 1.01% Castro::construct_new_source() 50 0.02915 0.03054 0.03298 0.94% Gravity::interpolate_monopole_grav() 21 0.0273 0.02938 0.03127 0.89% Castro::construct_new_gravity_source() 10 0.0232 0.02443 0.02666 0.76% Castro::post_init() 1 0.02318 0.02345 0.02359 0.67% Castro::finalize_do_advance() 10 0.01372 0.01884 0.02217 0.63% Castro::post_timestep() 10 0.01505 0.01574 0.01651 0.47% Castro::apply_source_to_state() 20 0.01041 0.01201 0.01323 0.38% FabArray::Saxpy() 20 0.01037 0.01196 0.01318 0.38% FabArray::setDomainBndry() 41 0.007086 0.009517 0.01184 0.34% Castro::Castro() 1 0.009986 0.01095 0.01173 0.33% Castro::check_for_nan() 20 0.009336 0.01015 0.0112 0.32% MultiFab::contains_nan() 20 0.009308 0.01012 0.01117 0.32% Castro::construct_old_source() 50 0.00666 0.008982 0.009721 0.28% Castro::construct_old_gravity_source() 10 0.006603 0.008912 0.009647 0.27% Castro::computeNewDt() 9 0.008987 0.008998 0.009007 0.26% Castro::initMFs() 1 0.006393 0.006879 0.008291 0.24% Other 261 0.02545 0.02849 0.03143 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6636 KiB 6642 KiB 6645 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4486 KiB 4493 KiB 4515 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 196 KiB 215 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 62 KiB 63 KiB 66 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2754 KiB 2757 KiB 2758 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 228 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-18-g92679babfc2c) finalized