Initializing AMReX (24.10-18-g92679babfc2c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.10-18-g92679babfc2c) initialized Starting run at 05:27:11 UTC on 2024-10-28. Successfully read inputs file ... Castro git describe: 24.10-9-gdb92cbae3 AMReX git describe: 24.10-18-g92679babf Microphysics git describe: 24.10 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017704616 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.386997649 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.43459554 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.376358226 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.416040443 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.388736945 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.401165746 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.383201003 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.351513849 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.385335814 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.399024332 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012893914 seconds Ending run at 05:27:15 UTC on 2024-10-28. Run time = 4.160772353 Run time without initialization = 3.942569679 Average number of zones advanced per microsecond: 0.665 Average number of zones advanced per microsecond per rank: 0.083 TinyProfiler total time across processes [min...avg...max]: 4.1602 ... 4.1605 ... 4.1608 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5436 2.6944 2.8724 69.03% check_for_negative_density() 10 0.06118 0.2395 0.3874 9.31% Gravity::make_radial_gravity() 21 0.3016 0.317 0.3484 8.37% Castro::initData() 1 0.04918 0.09549 0.1446 3.48% Castro::estTimeStep() 21 0.03952 0.08396 0.1314 3.16% FabArray::ParallelCopy_finish() 41 0.04964 0.06249 0.1116 2.68% amrex::Copy() 193 0.06941 0.09772 0.1095 2.63% FabArray::setVal() 143 0.05983 0.0856 0.09651 2.32% FabArray::ParallelCopy_nowait() 41 0.04938 0.05197 0.05477 1.32% Castro::normalize_species() 62 0.04326 0.04657 0.05469 1.31% Castro::reset_internal_energy(Fab) 1008 0.04936 0.05084 0.05162 1.24% FillPatchIterator::Initialize 41 0.03494 0.04412 0.05065 1.22% StateData::FillBoundary(geom) 41 0.03376 0.03749 0.0432 1.04% Castro::construct_new_gravity_source() 10 0.02799 0.03045 0.03446 0.83% Gravity::interpolate_monopole_grav() 21 0.02883 0.02998 0.03102 0.75% Castro::initialize_do_advance() 10 0.01302 0.02138 0.02599 0.62% Castro::computeTemp() 63 0.02243 0.02336 0.02431 0.58% FabArray::Saxpy() 20 0.0143 0.01566 0.01706 0.41% Amr::writePlotFile() 2 0.01013 0.01449 0.01666 0.40% VisMF::Write(FabArray) 2 0.009805 0.01122 0.01602 0.39% FabArray::setDomainBndry() 41 0.01049 0.01343 0.01519 0.37% Castro::initialize_advance() 10 0.005289 0.01249 0.0139 0.33% MultiFab::contains_nan() 20 0.01102 0.01242 0.01358 0.33% Castro::construct_old_gravity_source() 10 0.009264 0.01232 0.0135 0.32% Castro::initMFs() 1 0.006583 0.00791 0.01096 0.26% Castro::construct_new_source() 50 0.006997 0.007854 0.008318 0.20% main() 1 0.005466 0.005818 0.006139 0.15% Gravity::get_new_grav_vector() 11 0.003452 0.004011 0.004955 0.12% Amr::coarseTimeStep() 10 0.001548 0.003127 0.004382 0.11% Gravity::get_old_grav_vector() 10 0.0017 0.00258 0.003185 0.08% Castro::finalize_do_advance() 10 0.0006232 0.001013 0.00115 0.03% AmrLevel::FillPatch() 41 0.0009351 0.0009926 0.001044 0.03% Amr::timeStep() 10 0.0002076 0.0002682 0.0004272 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003048 0.0003347 0.0003757 0.01% Castro::do_advance_ctu() 10 0.0001907 0.0002222 0.0002637 0.01% Castro::clean_state() 62 0.0001732 0.0002008 0.0002401 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001366 0.0001632 0.0002303 0.01% StateDataPhysBCFunct::() 41 0.0001126 0.0001332 0.0001594 0.00% Castro::do_old_sources() 10 0.0001205 0.0001359 0.0001533 0.00% FabArray::ParallelCopy() 41 0.0001138 0.0001253 0.0001374 0.00% Castro::construct_old_source() 50 8.202e-05 0.0001064 0.0001335 0.00% FillPatchSingleLevel 41 9.4e-05 0.0001079 0.0001316 0.00% Castro::Castro() 1 5.674e-05 8.078e-05 9.715e-05 0.00% Castro::do_new_sources() 10 6.753e-05 7.538e-05 8.858e-05 0.00% Castro::subcycle_advance_ctu() 10 6.157e-05 7.314e-05 8.749e-05 0.00% Amr::FinalizeInit() 1 3.645e-06 1.455e-05 8.438e-05 0.00% Castro::apply_source_to_state() 20 5.223e-05 6.211e-05 7.088e-05 0.00% Castro::advance() 10 4.955e-05 5.667e-05 6.964e-05 0.00% Amr::defBaseLevel() 1 4.402e-05 5.348e-05 6.37e-05 0.00% Castro::construct_old_gravity() 10 4.144e-05 4.809e-05 6.146e-05 0.00% Castro::construct_new_gravity() 10 3.18e-05 4.102e-05 5.463e-05 0.00% Castro::expand_state() 10 3.319e-05 4.07e-05 4.999e-05 0.00% Castro::check_for_nan() 20 2.563e-05 3.2e-05 3.986e-05 0.00% Castro::post_timestep() 10 2.068e-05 2.363e-05 2.807e-05 0.00% Castro::computeNewDt() 9 8.792e-06 1.095e-05 1.466e-05 0.00% Castro::post_init() 1 7.59e-06 8.729e-06 9.639e-06 0.00% Amr::init() 1 2.124e-06 4.361e-06 8.676e-06 0.00% Amr::InitializeInit() 1 2.629e-06 3.984e-06 7.863e-06 0.00% Castro::computeInitialDt() 2 3.487e-06 4.383e-06 5.331e-06 0.00% Amr::initialInit() 1 1.549e-06 1.883e-06 2.26e-06 0.00% Other 261 0.0172 0.02034 0.02523 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.16 4.161 4.161 100.00% Amr::coarseTimeStep() 10 3.924 3.924 3.924 94.30% Amr::timeStep() 10 3.908 3.909 3.91 93.98% Castro::advance() 10 3.891 3.892 3.892 93.54% Castro::subcycle_advance_ctu() 10 3.79 3.799 3.825 91.93% Castro::do_advance_ctu() 10 3.79 3.799 3.825 91.92% Castro::construct_ctu_hydro_source() 10 2.95 2.956 2.965 71.25% check_for_negative_density() 10 0.06118 0.2395 0.3874 9.31% Gravity::make_radial_gravity() 21 0.3209 0.3366 0.3623 8.71% AmrLevel::FillPatch() 41 0.2397 0.2501 0.2681 6.44% FillPatchIterator::Initialize 41 0.1984 0.2102 0.2424 5.83% Gravity::get_new_grav_vector() 11 0.2219 0.2259 0.2291 5.51% Castro::construct_old_gravity() 10 0.1945 0.2066 0.2272 5.46% Gravity::get_old_grav_vector() 10 0.1937 0.2058 0.2264 5.44% Amr::init() 1 0.2177 0.2178 0.2179 5.24% Castro::initialize_do_advance() 10 0.1947 0.2012 0.2127 5.11% Castro::construct_new_gravity() 10 0.1992 0.2018 0.204 4.90% Amr::initialInit() 1 0.1998 0.2006 0.2015 4.84% FillPatchIterator::FillFromLevel0() 41 0.1393 0.1526 0.1956 4.70% FillPatchSingleLevel 41 0.1392 0.1524 0.1954 4.70% Amr::InitializeInit() 1 0.07012 0.1183 0.1723 4.14% Amr::defBaseLevel() 1 0.07011 0.1183 0.1723 4.14% FabArray::ParallelCopy() 41 0.1013 0.1147 0.1613 3.88% Castro::expand_state() 10 0.1291 0.1389 0.1535 3.69% Castro::initData() 1 0.05329 0.09967 0.1487 3.57% Castro::clean_state() 62 0.1215 0.1272 0.1365 3.28% Castro::estTimeStep() 21 0.03952 0.08396 0.1314 3.16% Amr::FinalizeInit() 1 0.02766 0.08226 0.131 3.15% Castro::do_old_sources() 10 0.1175 0.1198 0.1235 2.97% FabArray::ParallelCopy_finish() 41 0.04964 0.06249 0.1116 2.68% amrex::Copy() 193 0.06941 0.09772 0.1095 2.63% Castro::computeInitialDt() 2 0.00302 0.05707 0.1053 2.53% FabArray::setVal() 143 0.05983 0.0856 0.09651 2.32% Castro::initialize_advance() 10 0.0612 0.08723 0.09603 2.31% Castro::do_new_sources() 10 0.06817 0.07634 0.0813 1.95% Castro::computeTemp() 63 0.07227 0.07454 0.07616 1.83% FabArray::ParallelCopy_nowait() 41 0.04953 0.05209 0.05489 1.32% Castro::normalize_species() 62 0.04326 0.04657 0.05469 1.31% Castro::reset_internal_energy(MultiFab) 63 0.04966 0.05118 0.05194 1.25% Castro::reset_internal_energy(Fab) 1008 0.04936 0.05084 0.05162 1.24% StateDataPhysBCFunct::() 41 0.03392 0.03763 0.04335 1.04% StateData::FillBoundary(geom) 41 0.03376 0.03749 0.0432 1.04% Castro::construct_new_source() 50 0.03499 0.03831 0.0426 1.02% Castro::construct_new_gravity_source() 10 0.02799 0.03045 0.03446 0.83% Gravity::interpolate_monopole_grav() 21 0.02883 0.02998 0.03102 0.75% Amr::writePlotFile() 2 0.02923 0.03022 0.03084 0.74% Castro::finalize_do_advance() 10 0.01296 0.01809 0.02728 0.66% Castro::post_init() 1 0.02441 0.02527 0.02638 0.63% Castro::post_timestep() 10 0.01619 0.01696 0.01854 0.45% Castro::apply_source_to_state() 20 0.01437 0.01572 0.01713 0.41% FabArray::Saxpy() 20 0.0143 0.01566 0.01706 0.41% VisMF::Write(FabArray) 2 0.009805 0.01122 0.01602 0.39% Castro::Castro() 1 0.01046 0.012 0.0155 0.37% FabArray::setDomainBndry() 41 0.01049 0.01343 0.01519 0.37% Castro::construct_old_source() 50 0.009346 0.01242 0.01363 0.33% Castro::check_for_nan() 20 0.01105 0.01246 0.01362 0.33% MultiFab::contains_nan() 20 0.01102 0.01242 0.01358 0.33% Castro::construct_old_gravity_source() 10 0.009264 0.01232 0.0135 0.32% Castro::initMFs() 1 0.006583 0.00791 0.01096 0.26% Castro::computeNewDt() 9 0.009799 0.009831 0.009855 0.24% Other 261 0.029 0.03372 0.04144 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 35 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8673 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6756 KiB 6761 KiB 6764 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7136 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4562 KiB 4593 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 227 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 196 KiB 206 KiB 222 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 68 KiB 69 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 59 KiB 63 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.10-18-g92679babfc2c) finalized