Initializing AMReX (24.11-4-g13e61eb5f33b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-4-g13e61eb5f33b) initialized Starting run at 06:22:07 UTC on 2024-11-04. Successfully read inputs file ... Castro git describe: 24.11 AMReX git describe: 24.11-4-g13e61eb5f Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014416966 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354833325 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.362273248 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.359175046 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.356278244 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.344112466 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308558011 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307908115 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307620203 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309984089 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311117077 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009098302 seconds Ending run at 06:22:10 UTC on 2024-11-04. Run time = 3.538652652 Run time without initialization = 3.335420038 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5381 ... 3.5385 ... 3.5387 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2142 2.3036 2.3873 67.46% Gravity::make_radial_gravity() 21 0.2962 0.3059 0.3205 9.06% check_for_negative_density() 10 0.04343 0.1284 0.2216 6.26% Castro::initData() 1 0.04748 0.08812 0.1379 3.90% Castro::estTimeStep() 21 0.03168 0.08691 0.1316 3.72% amrex::Copy() 193 0.07232 0.07908 0.08582 2.43% FabArray::setVal() 143 0.06395 0.0738 0.08291 2.34% FabArray::ParallelCopy_finish() 41 0.03832 0.05192 0.06392 1.81% Castro::normalize_species() 62 0.04233 0.04737 0.0577 1.63% Castro::reset_internal_energy(Fab) 1008 0.04259 0.04652 0.05044 1.43% FabArray::ParallelCopy_nowait() 41 0.04037 0.04156 0.04267 1.21% FillPatchIterator::Initialize 41 0.02978 0.03261 0.03502 0.99% StateData::FillBoundary(geom) 41 0.02948 0.03315 0.03461 0.98% Gravity::interpolate_monopole_grav() 21 0.02794 0.02897 0.02938 0.83% Castro::construct_new_gravity_source() 10 0.0232 0.02601 0.02826 0.80% Castro::computeTemp() 63 0.01947 0.02103 0.02197 0.62% Castro::initialize_do_advance() 10 0.01508 0.01823 0.021 0.59% FabArray::Saxpy() 20 0.01211 0.01285 0.01482 0.42% Castro::initialize_advance() 10 0.009495 0.01146 0.01341 0.38% FabArray::setDomainBndry() 41 0.007593 0.01044 0.01278 0.36% VisMF::Write(FabArray) 2 0.009209 0.00964 0.012 0.34% Amr::writePlotFile() 2 0.008818 0.01121 0.01167 0.33% MultiFab::contains_nan() 20 0.009225 0.01039 0.01105 0.31% Castro::construct_old_gravity_source() 10 0.008604 0.009641 0.01004 0.28% Amr::coarseTimeStep() 10 0.002228 0.004074 0.007891 0.22% Castro::initMFs() 1 0.006328 0.006827 0.007537 0.21% Castro::construct_new_source() 50 0.005892 0.006162 0.006326 0.18% Gravity::get_new_grav_vector() 11 0.002866 0.003901 0.005456 0.15% main() 1 0.003461 0.003807 0.004092 0.12% Gravity::get_old_grav_vector() 10 0.001571 0.002162 0.002491 0.07% AmrLevel::FillPatch() 41 0.0008671 0.001038 0.00122 0.03% Castro::finalize_do_advance() 10 0.0004461 0.0009411 0.001053 0.03% Amr::timeStep() 10 0.0001596 0.000211 0.0004051 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002805 0.0002923 0.000318 0.01% Castro::clean_state() 62 0.0001449 0.0001653 0.0002121 0.01% Castro::do_advance_ctu() 10 0.0001377 0.0001592 0.0001907 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001003 0.0001192 0.0001655 0.00% StateDataPhysBCFunct::() 41 0.0001033 0.0001117 0.0001153 0.00% Castro::do_old_sources() 10 7.996e-05 9.286e-05 0.0001083 0.00% FabArray::ParallelCopy() 41 8.481e-05 9.24e-05 0.0001038 0.00% Amr::FinalizeInit() 1 3.638e-06 1.69e-05 0.0001035 0.00% Castro::Castro() 1 5.552e-05 7.925e-05 9.823e-05 0.00% FillPatchSingleLevel 41 7.464e-05 8.025e-05 9.282e-05 0.00% Castro::construct_old_source() 50 6.398e-05 7.882e-05 9.198e-05 0.00% Amr::defBaseLevel() 1 4.623e-05 5.637e-05 7.786e-05 0.00% Castro::do_new_sources() 10 5.491e-05 5.893e-05 6.857e-05 0.00% Castro::subcycle_advance_ctu() 10 4.718e-05 5.352e-05 6.096e-05 0.00% Castro::advance() 10 3.975e-05 4.613e-05 5.899e-05 0.00% Castro::apply_source_to_state() 20 4.273e-05 4.674e-05 5.211e-05 0.00% Castro::construct_old_gravity() 10 3.106e-05 3.638e-05 4.19e-05 0.00% Castro::construct_new_gravity() 10 3.092e-05 3.395e-05 3.803e-05 0.00% Castro::expand_state() 10 1.873e-05 2.486e-05 3.4e-05 0.00% Castro::check_for_nan() 20 2.211e-05 2.754e-05 3.354e-05 0.00% Castro::computeNewDt() 9 7.756e-06 1.104e-05 2.625e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.783e-05 2.138e-05 0.00% Castro::post_init() 1 8.591e-06 1.191e-05 2.077e-05 0.00% Amr::InitializeInit() 1 2.552e-06 3.302e-06 6.592e-06 0.00% Castro::computeInitialDt() 2 3.179e-06 3.824e-06 4.279e-06 0.00% Amr::init() 1 1.747e-06 2.296e-06 3.656e-06 0.00% Amr::initialInit() 1 1.661e-06 1.909e-06 2.385e-06 0.00% Other 261 0.0162 0.01873 0.01996 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.538 3.538 3.539 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 93.89% Amr::timeStep() 10 3.303 3.305 3.306 93.43% Castro::advance() 10 3.287 3.288 3.289 92.94% Castro::subcycle_advance_ctu() 10 3.202 3.209 3.218 90.94% Castro::do_advance_ctu() 10 3.202 3.209 3.218 90.94% Castro::construct_ctu_hydro_source() 10 2.451 2.455 2.458 69.47% Gravity::make_radial_gravity() 21 0.3116 0.3214 0.3357 9.49% Gravity::get_new_grav_vector() 11 0.2162 0.219 0.2223 6.28% check_for_negative_density() 10 0.04343 0.1284 0.2216 6.26% AmrLevel::FillPatch() 41 0.1906 0.2027 0.2135 6.03% Amr::init() 1 0.2027 0.2029 0.2029 5.73% Castro::construct_old_gravity() 10 0.1828 0.1884 0.1983 5.60% Castro::construct_new_gravity() 10 0.1918 0.1947 0.1973 5.58% Gravity::get_old_grav_vector() 10 0.1821 0.1876 0.1971 5.57% Amr::initialInit() 1 0.1881 0.1882 0.1883 5.32% FillPatchIterator::Initialize 41 0.1611 0.1702 0.182 5.14% Castro::initialize_do_advance() 10 0.1556 0.1692 0.1758 4.97% Amr::InitializeInit() 1 0.06837 0.1093 0.1599 4.52% Amr::defBaseLevel() 1 0.06837 0.1093 0.1599 4.52% Castro::initData() 1 0.05155 0.09207 0.1418 4.01% FillPatchIterator::FillFromLevel0() 41 0.1147 0.1271 0.1378 3.89% FillPatchSingleLevel 41 0.1146 0.127 0.1377 3.89% Castro::estTimeStep() 21 0.03168 0.08691 0.1316 3.72% Castro::clean_state() 62 0.1109 0.1206 0.1309 3.70% Castro::expand_state() 10 0.1043 0.1148 0.1222 3.45% Amr::FinalizeInit() 1 0.0283 0.07895 0.1198 3.39% FabArray::ParallelCopy() 41 0.08118 0.09367 0.1045 2.95% Castro::do_old_sources() 10 0.09139 0.09454 0.09751 2.76% Castro::computeInitialDt() 2 0.002251 0.05291 0.09383 2.65% amrex::Copy() 193 0.07232 0.07908 0.08582 2.43% FabArray::setVal() 143 0.06395 0.0738 0.08291 2.34% Castro::initialize_advance() 10 0.0662 0.07535 0.08193 2.32% Castro::do_new_sources() 10 0.06032 0.06889 0.07549 2.13% Castro::computeTemp() 63 0.06255 0.06784 0.0727 2.05% FabArray::ParallelCopy_finish() 41 0.03832 0.05192 0.06392 1.81% Castro::normalize_species() 62 0.04233 0.04737 0.0577 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04287 0.04681 0.05073 1.43% Castro::reset_internal_energy(Fab) 1008 0.04259 0.04652 0.05044 1.43% FabArray::ParallelCopy_nowait() 41 0.04048 0.04166 0.04277 1.21% StateDataPhysBCFunct::() 41 0.02958 0.03326 0.03472 0.98% StateData::FillBoundary(geom) 41 0.02948 0.03315 0.03461 0.98% Castro::construct_new_source() 50 0.02921 0.03218 0.03454 0.98% Castro::finalize_do_advance() 10 0.01545 0.02254 0.03126 0.88% Gravity::interpolate_monopole_grav() 21 0.02794 0.02897 0.02938 0.83% Castro::construct_new_gravity_source() 10 0.0232 0.02601 0.02826 0.80% Castro::post_init() 1 0.02485 0.02541 0.02564 0.72% Amr::writePlotFile() 2 0.02376 0.02383 0.02393 0.68% Castro::post_timestep() 10 0.01477 0.01648 0.01846 0.52% Castro::apply_source_to_state() 20 0.01215 0.0129 0.01487 0.42% FabArray::Saxpy() 20 0.01211 0.01285 0.01482 0.42% FabArray::setDomainBndry() 41 0.007593 0.01044 0.01278 0.36% Castro::computeNewDt() 9 0.009982 0.01242 0.01278 0.36% VisMF::Write(FabArray) 2 0.009209 0.00964 0.012 0.34% Castro::Castro() 1 0.009259 0.01098 0.01192 0.34% Castro::check_for_nan() 20 0.009253 0.01041 0.01108 0.31% MultiFab::contains_nan() 20 0.009225 0.01039 0.01105 0.31% Castro::construct_old_source() 50 0.008668 0.00972 0.01013 0.29% Castro::construct_old_gravity_source() 10 0.008604 0.009641 0.01004 0.28% Castro::initMFs() 1 0.006328 0.006827 0.007537 0.21% Other 261 0.02598 0.03037 0.033 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8673 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6720 KiB 6726 KiB 6727 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7142 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4521 KiB 4530 KiB 4544 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 200 KiB 216 KiB 229 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2784 KiB 2787 KiB 2787 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 224 KiB 231 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 40 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-4-g13e61eb5f33b) finalized