Initializing AMReX (24.11-5-g45365582ba2c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-5-g45365582ba2c) initialized Starting run at 06:40:07 UTC on 2024-11-06. Successfully read inputs file ... Castro git describe: 24.11 AMReX git describe: 24.11-5-g45365582b Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015370798 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343959368 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330612476 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327293456 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.327453309 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363070123 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.320226836 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.318174118 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.318220285 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.319209172 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.320142407 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008246643 seconds Ending run at 06:40:10 UTC on 2024-11-06. Run time = 3.526104002 Run time without initialization = 3.301646758 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5258 ... 3.5260 ... 3.5261 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2548 2.3350 2.3897 67.77% Gravity::make_radial_gravity() 21 0.299 0.3133 0.3384 9.60% Castro::initData() 1 0.04926 0.09386 0.1531 4.34% check_for_negative_density() 10 0.01247 0.06971 0.1521 4.31% Castro::estTimeStep() 21 0.02847 0.09214 0.1382 3.92% FabArray::ParallelCopy_finish() 41 0.0476 0.06654 0.1106 3.14% amrex::Copy() 193 0.06063 0.08089 0.0877 2.49% FabArray::setVal() 143 0.05089 0.06503 0.07372 2.09% Castro::reset_internal_energy(Fab) 1008 0.04408 0.04701 0.04895 1.39% FabArray::ParallelCopy_nowait() 41 0.0318 0.0412 0.04541 1.29% Castro::normalize_species() 62 0.04196 0.04245 0.04348 1.23% StateData::FillBoundary(geom) 41 0.02982 0.0341 0.04123 1.17% FillPatchIterator::Initialize 41 0.0262 0.03281 0.03688 1.05% Gravity::interpolate_monopole_grav() 21 0.02719 0.02943 0.0305 0.86% Castro::construct_new_gravity_source() 10 0.02118 0.024 0.02472 0.70% Castro::computeTemp() 63 0.01976 0.02093 0.02145 0.61% Castro::initialize_do_advance() 10 0.01051 0.01554 0.01761 0.50% FabArray::Saxpy() 20 0.008864 0.01234 0.01399 0.40% VisMF::Write(FabArray) 2 0.009076 0.009966 0.01365 0.39% Amr::writePlotFile() 2 0.007678 0.01139 0.01362 0.39% MultiFab::contains_nan() 20 0.009318 0.01102 0.01327 0.38% FabArray::setDomainBndry() 41 0.006078 0.01001 0.0125 0.35% Castro::initialize_advance() 10 0.00484 0.01006 0.01239 0.35% Castro::initMFs() 1 0.006384 0.007736 0.01008 0.29% Castro::construct_old_gravity_source() 10 0.005344 0.008768 0.009928 0.28% Castro::construct_new_source() 50 0.005192 0.006309 0.006838 0.19% main() 1 0.004165 0.00439 0.004521 0.13% Gravity::get_new_grav_vector() 11 0.002667 0.003441 0.004108 0.12% Gravity::get_old_grav_vector() 10 0.001578 0.002016 0.002496 0.07% Amr::coarseTimeStep() 10 0.001189 0.001646 0.002304 0.07% Castro::finalize_do_advance() 10 0.0004583 0.00102 0.001378 0.04% AmrLevel::FillPatch() 41 0.0006814 0.0009388 0.001194 0.03% Amr::timeStep() 10 0.0001697 0.0002362 0.0005225 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002836 0.0002929 0.0003025 0.01% Castro::clean_state() 62 0.000145 0.0001631 0.0001901 0.01% Castro::do_advance_ctu() 10 0.0001089 0.0001484 0.0001771 0.01% StateDataPhysBCFunct::() 41 8.359e-05 0.0001199 0.0001619 0.00% FillPatchIterator::FillFromLevel0() 41 9.339e-05 0.0001094 0.000145 0.00% FabArray::ParallelCopy() 41 7.581e-05 9.546e-05 0.0001062 0.00% Castro::do_old_sources() 10 7.357e-05 8.871e-05 0.0001045 0.00% Castro::construct_old_source() 50 4.149e-05 7.857e-05 0.0001013 0.00% FillPatchSingleLevel 41 6.49e-05 7.734e-05 8.916e-05 0.00% Castro::subcycle_advance_ctu() 10 4.572e-05 5.867e-05 7.892e-05 0.00% Castro::Castro() 1 5.565e-05 6.508e-05 7.504e-05 0.00% Amr::FinalizeInit() 1 3.958e-06 1.255e-05 6.934e-05 0.00% Castro::do_new_sources() 10 4.501e-05 6.056e-05 6.779e-05 0.00% Amr::defBaseLevel() 1 4.588e-05 5.331e-05 6.395e-05 0.00% Castro::apply_source_to_state() 20 2.688e-05 4.314e-05 5.876e-05 0.00% Castro::advance() 10 3.724e-05 4.832e-05 5.689e-05 0.00% Castro::construct_old_gravity() 10 3.121e-05 3.902e-05 5.04e-05 0.00% Castro::construct_new_gravity() 10 2.746e-05 3.455e-05 4.151e-05 0.00% Castro::check_for_nan() 20 2.3e-05 3.12e-05 4.025e-05 0.00% Castro::expand_state() 10 1.89e-05 2.57e-05 3.111e-05 0.00% Castro::post_timestep() 10 1.605e-05 1.858e-05 2.112e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.412e-06 1.249e-05 1.901e-05 0.00% Castro::post_init() 1 8.161e-06 9.521e-06 1.2e-05 0.00% Castro::computeNewDt() 9 8.277e-06 9.247e-06 1.142e-05 0.00% Amr::init() 1 1.606e-06 2.769e-06 8.068e-06 0.00% Amr::InitializeInit() 1 2.916e-06 4.082e-06 7.826e-06 0.00% Castro::computeInitialDt() 2 3.226e-06 3.977e-06 4.717e-06 0.00% Amr::initialInit() 1 1.404e-06 1.772e-06 2.373e-06 0.00% Other 260 0.0158 0.01903 0.02279 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.526 3.526 3.526 100.00% Amr::coarseTimeStep() 10 3.289 3.289 3.289 93.27% Amr::timeStep() 10 3.276 3.277 3.277 92.94% Castro::advance() 10 3.26 3.261 3.261 92.48% Castro::subcycle_advance_ctu() 10 3.18 3.19 3.208 90.96% Castro::do_advance_ctu() 10 3.18 3.19 3.207 90.96% Castro::construct_ctu_hydro_source() 10 2.422 2.425 2.43 68.92% Gravity::make_radial_gravity() 21 0.3166 0.3292 0.3495 9.91% AmrLevel::FillPatch() 41 0.2087 0.2197 0.2284 6.48% Amr::init() 1 0.2239 0.2241 0.2241 6.36% Castro::construct_old_gravity() 10 0.1936 0.2042 0.222 6.30% Gravity::get_old_grav_vector() 10 0.1927 0.2034 0.2214 6.28% Gravity::get_new_grav_vector() 11 0.2102 0.2121 0.2134 6.05% Amr::initialInit() 1 0.2078 0.2083 0.2087 5.92% FillPatchIterator::Initialize 41 0.175 0.1852 0.2049 5.81% Castro::construct_new_gravity() 10 0.1848 0.1865 0.1875 5.32% Castro::initialize_do_advance() 10 0.1675 0.1796 0.1871 5.31% Amr::InitializeInit() 1 0.07019 0.1155 0.1788 5.07% Amr::defBaseLevel() 1 0.07019 0.1155 0.1788 5.07% FillPatchIterator::FillFromLevel0() 41 0.1266 0.1423 0.1726 4.90% FillPatchSingleLevel 41 0.1265 0.1422 0.1725 4.89% Castro::initData() 1 0.05284 0.09764 0.1574 4.46% check_for_negative_density() 10 0.01247 0.06971 0.1521 4.31% FabArray::ParallelCopy() 41 0.0928 0.1079 0.1425 4.04% Castro::estTimeStep() 21 0.02847 0.09214 0.1382 3.92% Amr::FinalizeInit() 1 0.02994 0.09278 0.1381 3.92% Castro::expand_state() 10 0.1144 0.1265 0.1326 3.76% Castro::clean_state() 62 0.1123 0.116 0.1179 3.34% Castro::computeInitialDt() 2 0.002586 0.06588 0.1113 3.16% FabArray::ParallelCopy_finish() 41 0.0476 0.06654 0.1106 3.14% Castro::do_old_sources() 10 0.09421 0.09768 0.1018 2.89% amrex::Copy() 193 0.06063 0.08089 0.0877 2.49% Castro::initialize_advance() 10 0.04948 0.06723 0.07762 2.20% FabArray::setVal() 143 0.05089 0.06503 0.07372 2.09% Castro::computeTemp() 63 0.06415 0.06824 0.07046 2.00% Castro::do_new_sources() 10 0.05424 0.0629 0.06493 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04438 0.04731 0.04924 1.40% Castro::reset_internal_energy(Fab) 1008 0.04408 0.04701 0.04895 1.39% FabArray::ParallelCopy_nowait() 41 0.03188 0.0413 0.0455 1.29% Castro::normalize_species() 62 0.04196 0.04245 0.04348 1.23% StateDataPhysBCFunct::() 41 0.02991 0.03422 0.04135 1.17% StateData::FillBoundary(geom) 41 0.02982 0.0341 0.04123 1.17% Castro::construct_new_source() 50 0.02637 0.03031 0.03156 0.89% Gravity::interpolate_monopole_grav() 21 0.02719 0.02943 0.0305 0.86% Castro::finalize_do_advance() 10 0.01537 0.01816 0.02706 0.77% Castro::post_init() 1 0.02601 0.02653 0.02701 0.77% Castro::construct_new_gravity_source() 10 0.02118 0.024 0.02472 0.70% Amr::writePlotFile() 2 0.02358 0.02405 0.02466 0.70% Castro::post_timestep() 10 0.0152 0.01575 0.01605 0.46% Castro::Castro() 1 0.009294 0.01131 0.01413 0.40% Castro::apply_source_to_state() 20 0.008891 0.01238 0.01403 0.40% FabArray::Saxpy() 20 0.008864 0.01234 0.01399 0.40% VisMF::Write(FabArray) 2 0.009076 0.009966 0.01365 0.39% Castro::check_for_nan() 20 0.009357 0.01105 0.0133 0.38% MultiFab::contains_nan() 20 0.009318 0.01102 0.01327 0.38% FabArray::setDomainBndry() 41 0.006078 0.01001 0.0125 0.35% Castro::initMFs() 1 0.006384 0.007736 0.01008 0.29% Castro::construct_old_source() 50 0.005385 0.008847 0.01002 0.28% Castro::construct_old_gravity_source() 10 0.005344 0.008768 0.009928 0.28% Castro::computeNewDt() 9 0.009107 0.00913 0.009154 0.26% AmrLevel::AmrLevel(dm) 1 0.005364 0.006393 0.008118 0.23% Other 260 0.02032 0.02411 0.02846 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 44 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6675 KiB 6681 KiB 6684 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4506 KiB 4520 KiB 4546 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 221 KiB 238 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2770 KiB 2773 KiB 2774 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 238 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 48 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 74 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-5-g45365582ba2c) finalized