Initializing AMReX (24.11-9-g4b703fec6c2f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-9-g4b703fec6c2f) initialized Starting run at 00:44:15 UTC on 2024-11-08. Successfully read inputs file ... Castro git describe: 24.11-11-g00c76bd0e AMReX git describe: 24.11-9-g4b703fec6 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014493416 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.356135715 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346991594 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326332551 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.358097496 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361425842 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311033043 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308903952 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309856748 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309804986 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311709874 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00759299 seconds Ending run at 00:44:19 UTC on 2024-11-08. Run time = 3.538622502 Run time without initialization = 3.312935038 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5377 ... 3.5382 ... 3.5387 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2781 2.3197 2.3522 66.47% Gravity::make_radial_gravity() 21 0.3035 0.3092 0.324 9.15% Castro::estTimeStep() 21 0.04067 0.08543 0.1369 3.87% Castro::initData() 1 0.04901 0.09207 0.1344 3.80% check_for_negative_density() 10 0.04599 0.08311 0.1278 3.61% FabArray::ParallelCopy_finish() 41 0.05653 0.06934 0.09473 2.68% amrex::Copy() 193 0.06186 0.07849 0.08697 2.46% FabArray::setVal() 143 0.06019 0.06726 0.0786 2.22% Castro::reset_internal_energy(Fab) 1008 0.04515 0.04697 0.04858 1.37% FabArray::ParallelCopy_nowait() 41 0.03412 0.04076 0.04734 1.34% Castro::normalize_species() 62 0.04215 0.04339 0.04607 1.30% FillPatchIterator::Initialize 41 0.02919 0.03306 0.0361 1.02% StateData::FillBoundary(geom) 41 0.03036 0.03267 0.03589 1.01% Gravity::interpolate_monopole_grav() 21 0.02859 0.03042 0.03516 0.99% Castro::construct_new_gravity_source() 10 0.02296 0.02568 0.02961 0.84% Castro::computeTemp() 63 0.02 0.02095 0.02145 0.61% Amr::InitAmr() 1 0.000205 0.002855 0.02106 0.60% DistributionMapping::LeastUsedCPUs() 1 2.544e-05 0.01824 0.0209 0.59% Castro::initialize_do_advance() 10 0.01335 0.01661 0.02037 0.58% Castro::initialize_advance() 10 0.005405 0.01013 0.01305 0.37% FabArray::Saxpy() 20 0.01113 0.01222 0.01281 0.36% Amr::writePlotFile() 2 0.007476 0.01019 0.01211 0.34% VisMF::Write(FabArray) 2 0.00895 0.009697 0.0121 0.34% FabArray::setDomainBndry() 41 0.008308 0.009985 0.01185 0.33% Castro::initMFs() 1 0.006606 0.008147 0.0118 0.33% MultiFab::contains_nan() 20 0.01024 0.01098 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.006541 0.008873 0.009573 0.27% StateData::define() 4 0.005446 0.0066 0.009379 0.27% Castro::construct_new_source() 50 0.005274 0.005853 0.006043 0.17% main() 1 0.003604 0.004097 0.004552 0.13% Gravity::get_new_grav_vector() 11 0.002893 0.003526 0.003945 0.11% Amr::coarseTimeStep() 10 0.0007217 0.002074 0.002941 0.08% Gravity::get_old_grav_vector() 10 0.001597 0.001923 0.002467 0.07% Castro::finalize_do_advance() 10 0.0004892 0.001022 0.001548 0.04% AmrLevel::FillPatch() 41 0.0007593 0.001028 0.001171 0.03% Amr::timeStep() 10 0.0001607 0.0002239 0.0004493 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002745 0.0002887 0.0003143 0.01% Castro::do_advance_ctu() 10 0.0001373 0.00016 0.0001858 0.01% StateDataPhysBCFunct::() 41 9.855e-05 0.0001218 0.0001707 0.00% Castro::clean_state() 62 0.0001382 0.000147 0.0001662 0.00% FillPatchIterator::FillFromLevel0() 41 9.999e-05 0.0001096 0.0001211 0.00% Castro::do_old_sources() 10 7.803e-05 8.99e-05 0.0001052 0.00% FabArray::ParallelCopy() 41 7.948e-05 9.366e-05 0.0001024 0.00% Castro::Castro() 1 5.184e-05 6.881e-05 9.177e-05 0.00% FillPatchSingleLevel 41 6.653e-05 7.794e-05 8.717e-05 0.00% Amr::defBaseLevel() 1 4.855e-05 6.462e-05 8.278e-05 0.00% Castro::construct_old_source() 50 4.574e-05 6.904e-05 7.948e-05 0.00% Amr::FinalizeInit() 1 3.663e-06 1.273e-05 6.966e-05 0.00% Castro::apply_source_to_state() 20 4.3e-05 5.437e-05 6.5e-05 0.00% Castro::do_new_sources() 10 4.727e-05 5.536e-05 6e-05 0.00% Castro::advance() 10 3.581e-05 4.635e-05 5.877e-05 0.00% Castro::subcycle_advance_ctu() 10 4.374e-05 4.946e-05 5.371e-05 0.00% Castro::construct_old_gravity() 10 3.204e-05 3.846e-05 4.494e-05 0.00% Castro::construct_new_gravity() 10 2.974e-05 3.663e-05 4.403e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.343e-05 1.83e-05 3.117e-05 0.00% Castro::expand_state() 10 2.132e-05 2.55e-05 3.097e-05 0.00% Castro::check_for_nan() 20 2.34e-05 2.549e-05 2.99e-05 0.00% Castro::post_timestep() 10 1.548e-05 1.982e-05 2.459e-05 0.00% Castro::post_init() 1 8.81e-06 9.867e-06 1.182e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.695e-06 5.037e-06 8.086e-06 0.00% Castro::computeInitialDt() 2 3.327e-06 4.084e-06 6.375e-06 0.00% Amr::InitializeInit() 1 2.647e-06 3.702e-06 5.792e-06 0.00% Amr::init() 1 1.975e-06 2.328e-06 3.032e-06 0.00% Amr::initialInit() 1 1.314e-06 1.683e-06 2.363e-06 0.00% Other 262 0.01189 0.01375 0.01578 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.538 3.538 3.539 100.00% Amr::coarseTimeStep() 10 3.301 3.301 3.301 93.28% Amr::timeStep() 10 3.287 3.288 3.29 92.96% Castro::advance() 10 3.271 3.272 3.273 92.49% Castro::subcycle_advance_ctu() 10 3.19 3.199 3.206 90.60% Castro::do_advance_ctu() 10 3.19 3.199 3.206 90.60% Castro::construct_ctu_hydro_source() 10 2.42 2.424 2.428 68.63% Gravity::make_radial_gravity() 21 0.3203 0.3259 0.3368 9.52% Gravity::get_new_grav_vector() 11 0.2244 0.2269 0.2312 6.53% AmrLevel::FillPatch() 41 0.1954 0.2186 0.2264 6.40% Amr::init() 1 0.2045 0.2227 0.2253 6.37% Amr::initialInit() 1 0.1898 0.2079 0.2107 5.95% Castro::construct_new_gravity() 10 0.2014 0.2034 0.2078 5.87% Castro::construct_old_gravity() 10 0.1878 0.1916 0.2006 5.67% Gravity::get_old_grav_vector() 10 0.1869 0.1907 0.1995 5.64% FillPatchIterator::Initialize 41 0.1667 0.1863 0.1992 5.63% Amr::InitializeInit() 1 0.0717 0.1329 0.1832 5.18% Amr::defBaseLevel() 1 0.07169 0.1329 0.1832 5.18% Castro::initialize_do_advance() 10 0.1633 0.176 0.1819 5.14% FillPatchIterator::FillFromLevel0() 41 0.129 0.1433 0.161 4.55% FillPatchSingleLevel 41 0.1288 0.1432 0.1609 4.55% Castro::initData() 1 0.05314 0.09587 0.1378 3.89% Castro::estTimeStep() 21 0.04067 0.08543 0.1369 3.87% FabArray::ParallelCopy() 41 0.09699 0.1103 0.129 3.65% Castro::expand_state() 10 0.1068 0.1224 0.1284 3.63% check_for_negative_density() 10 0.04599 0.08311 0.1278 3.61% Castro::clean_state() 62 0.1142 0.1183 0.123 3.48% Amr::FinalizeInit() 1 0.02726 0.07499 0.1209 3.42% Castro::do_old_sources() 10 0.09075 0.09502 0.09756 2.76% Castro::computeInitialDt() 2 0.002814 0.05061 0.09647 2.73% FabArray::ParallelCopy_finish() 41 0.05653 0.06934 0.09473 2.68% amrex::Copy() 193 0.06186 0.07849 0.08697 2.46% FabArray::setVal() 143 0.06019 0.06726 0.0786 2.22% Castro::initialize_advance() 10 0.06172 0.06923 0.07826 2.21% Castro::do_new_sources() 10 0.05951 0.06644 0.07603 2.15% Castro::computeTemp() 63 0.06542 0.06821 0.07027 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04543 0.04726 0.04888 1.38% Castro::reset_internal_energy(Fab) 1008 0.04515 0.04697 0.04858 1.37% FabArray::ParallelCopy_nowait() 41 0.0342 0.04086 0.04744 1.34% Castro::normalize_species() 62 0.04215 0.04339 0.04607 1.30% StateDataPhysBCFunct::() 41 0.03047 0.03279 0.03606 1.02% StateData::FillBoundary(geom) 41 0.03036 0.03267 0.03589 1.01% Castro::construct_new_source() 50 0.02884 0.03153 0.03553 1.00% Castro::finalize_do_advance() 10 0.01286 0.02701 0.03551 1.00% Gravity::interpolate_monopole_grav() 21 0.02859 0.03042 0.03516 0.99% Castro::construct_new_gravity_source() 10 0.02296 0.02568 0.02961 0.84% Castro::post_init() 1 0.02413 0.02437 0.02456 0.69% Amr::writePlotFile() 2 0.02231 0.02248 0.02289 0.65% Amr::InitAmr() 1 0.0002085 0.002858 0.02107 0.60% DistributionMapping::SFCProcessorMapDoIt() 1 3.02e-05 0.01825 0.02091 0.59% DistributionMapping::LeastUsedCPUs() 1 2.544e-05 0.01824 0.0209 0.59% Castro::Castro() 1 0.01011 0.01209 0.01655 0.47% Castro::post_timestep() 10 0.01544 0.01607 0.01639 0.46% Castro::apply_source_to_state() 20 0.01118 0.01228 0.01287 0.36% FabArray::Saxpy() 20 0.01113 0.01222 0.01281 0.36% VisMF::Write(FabArray) 2 0.00895 0.009697 0.0121 0.34% FabArray::setDomainBndry() 41 0.008308 0.009985 0.01185 0.33% Castro::initMFs() 1 0.006606 0.008147 0.0118 0.33% Castro::check_for_nan() 20 0.01027 0.011 0.01175 0.33% MultiFab::contains_nan() 20 0.01024 0.01098 0.01173 0.33% Castro::construct_old_source() 50 0.006587 0.008942 0.009651 0.27% Castro::construct_old_gravity_source() 10 0.006541 0.008873 0.009573 0.27% AmrLevel::AmrLevel(dm) 1 0.00546 0.006618 0.009404 0.27% StateData::define() 4 0.005446 0.0066 0.009379 0.27% Other 262 0.0252 0.02784 0.03085 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 41 B 58 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8605 KiB 8618 KiB 8625 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6674 KiB 6680 KiB 6684 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7092 KiB 7099 KiB 7102 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4505 KiB 4517 KiB 4528 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 231 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2770 KiB 2773 KiB 2774 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 234 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 47 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2016 KiB 2017 KiB 2018 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-9-g4b703fec6c2f) finalized