Initializing AMReX (24.11-7-gad5071134335)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-7-gad5071134335) initialized Starting run at 06:39:26 UTC on 2024-11-07. Successfully read inputs file ... Castro git describe: 24.11 AMReX git describe: 24.11-7-gad5071134 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015087748 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.367849529 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.345003622 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.359234705 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.360556536 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.346204913 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305727041 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304355812 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304628422 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306194665 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305460613 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007856674 seconds Ending run at 06:39:29 UTC on 2024-11-07. Run time = 3.535038664 Run time without initialization = 3.318263388 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5346 ... 3.5349 ... 3.5351 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2706 2.3065 2.3405 66.21% Gravity::make_radial_gravity() 21 0.2916 0.3005 0.3067 8.68% check_for_negative_density() 10 0.07394 0.1092 0.1457 4.12% Castro::initData() 1 0.04737 0.08493 0.1214 3.43% Castro::estTimeStep() 21 0.02603 0.06727 0.1087 3.07% amrex::Copy() 193 0.07668 0.08051 0.08616 2.44% FabArray::setVal() 143 0.06411 0.07265 0.0818 2.31% FabArray::ParallelCopy_finish() 41 0.05191 0.06544 0.0773 2.19% Castro::reset_internal_energy(Fab) 1008 0.04521 0.04828 0.05668 1.60% Castro::normalize_species() 62 0.04164 0.04244 0.04336 1.23% FabArray::ParallelCopy_nowait() 41 0.03846 0.04096 0.04225 1.20% FillPatchIterator::Initialize 41 0.02989 0.03355 0.03579 1.01% StateData::FillBoundary(geom) 41 0.03174 0.03352 0.03565 1.01% Amr::InitAmr() 1 0.0002148 0.004117 0.03137 0.89% DistributionMapping::LeastUsedCPUs() 1 4.1e-05 0.02732 0.03124 0.88% Gravity::interpolate_monopole_grav() 21 0.02741 0.02903 0.02986 0.84% Castro::construct_new_gravity_source() 10 0.02366 0.02558 0.02832 0.80% Castro::computeTemp() 63 0.01979 0.02088 0.02138 0.60% Castro::initialize_do_advance() 10 0.01673 0.01827 0.02106 0.60% Castro::initialize_advance() 10 0.009894 0.0116 0.01366 0.39% FabArray::Saxpy() 20 0.01165 0.01238 0.01303 0.37% VisMF::Write(FabArray) 2 0.009556 0.01014 0.01267 0.36% FabArray::setDomainBndry() 41 0.008367 0.01048 0.01243 0.35% MultiFab::contains_nan() 20 0.01036 0.01106 0.01196 0.34% Amr::writePlotFile() 2 0.007623 0.01025 0.01084 0.31% Castro::construct_old_gravity_source() 10 0.008758 0.009573 0.01019 0.29% Castro::initMFs() 1 0.006604 0.00694 0.007614 0.22% Castro::construct_new_source() 50 0.005925 0.00606 0.006202 0.18% Gravity::get_new_grav_vector() 11 0.003293 0.00431 0.005696 0.16% main() 1 0.003684 0.003949 0.004208 0.12% Amr::coarseTimeStep() 10 0.002124 0.002547 0.00286 0.08% Gravity::get_old_grav_vector() 10 0.00176 0.002082 0.002487 0.07% Castro::finalize_do_advance() 10 0.001084 0.001166 0.001456 0.04% AmrLevel::FillPatch() 41 0.000854 0.001053 0.00119 0.03% Amr::timeStep() 10 0.0001925 0.0002514 0.0005377 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002918 0.0003228 0.000451 0.01% Castro::do_advance_ctu() 10 0.0001604 0.0001753 0.000191 0.01% Castro::clean_state() 62 0.0001571 0.0001691 0.0001903 0.01% StateDataPhysBCFunct::() 41 0.0001064 0.0001167 0.0001339 0.00% FillPatchIterator::FillFromLevel0() 41 9.702e-05 0.0001052 0.0001307 0.00% Amr::FinalizeInit() 1 4.279e-06 1.794e-05 0.0001111 0.00% Castro::Castro() 1 6.687e-05 8.793e-05 0.00011 0.00% FabArray::ParallelCopy() 41 8.889e-05 9.627e-05 0.0001074 0.00% Castro::do_old_sources() 10 8.459e-05 9.321e-05 0.0001015 0.00% Castro::construct_old_source() 50 6.517e-05 7.246e-05 9.017e-05 0.00% FillPatchSingleLevel 41 7.155e-05 7.96e-05 8.804e-05 0.00% Castro::do_new_sources() 10 5.523e-05 6.018e-05 7.209e-05 0.00% Amr::defBaseLevel() 1 4.658e-05 5.406e-05 7.008e-05 0.00% Castro::subcycle_advance_ctu() 10 4.989e-05 5.569e-05 6.905e-05 0.00% Castro::advance() 10 3.915e-05 4.961e-05 5.977e-05 0.00% Castro::apply_source_to_state() 20 4.034e-05 4.549e-05 5.463e-05 0.00% Castro::construct_old_gravity() 10 3.535e-05 4.097e-05 4.976e-05 0.00% Castro::construct_new_gravity() 10 2.806e-05 3.633e-05 4.293e-05 0.00% Castro::expand_state() 10 2.255e-05 2.598e-05 3.13e-05 0.00% Castro::check_for_nan() 20 2.313e-05 2.636e-05 2.808e-05 0.00% Castro::post_timestep() 10 1.667e-05 1.8e-05 2.007e-05 0.00% Castro::computeNewDt() 9 8.441e-06 9.752e-06 1.211e-05 0.00% Castro::post_init() 1 8.194e-06 9.483e-06 1.201e-05 0.00% Amr::InitializeInit() 1 2.816e-06 4.096e-06 1.044e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.778e-06 4.469e-06 6.012e-06 0.00% Castro::computeInitialDt() 2 3.532e-06 4.206e-06 4.831e-06 0.00% Amr::init() 1 1.83e-06 2.271e-06 2.899e-06 0.00% Amr::initialInit() 1 1.464e-06 1.801e-06 2.13e-06 0.00% Other 258 0.0161 0.01829 0.01973 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.535 3.535 100.00% Amr::coarseTimeStep() 10 3.306 3.306 3.306 93.53% Amr::timeStep() 10 3.293 3.294 3.294 93.18% Castro::advance() 10 3.277 3.277 3.278 92.73% Castro::subcycle_advance_ctu() 10 3.184 3.199 3.208 90.74% Castro::do_advance_ctu() 10 3.184 3.199 3.208 90.74% Castro::construct_ctu_hydro_source() 10 2.435 2.438 2.441 69.05% Gravity::make_radial_gravity() 21 0.3077 0.3171 0.3218 9.10% AmrLevel::FillPatch() 41 0.1918 0.2176 0.2342 6.63% Gravity::get_new_grav_vector() 11 0.2155 0.2176 0.2193 6.20% Amr::init() 1 0.1853 0.2125 0.2164 6.12% Amr::initialInit() 1 0.17 0.1972 0.2012 5.69% FillPatchIterator::Initialize 41 0.1615 0.1844 0.1988 5.62% Castro::construct_new_gravity() 10 0.1925 0.1942 0.1955 5.53% Castro::construct_old_gravity() 10 0.1825 0.1872 0.191 5.40% Gravity::get_old_grav_vector() 10 0.1818 0.1865 0.1903 5.38% Castro::initialize_do_advance() 10 0.1632 0.18 0.1897 5.37% Amr::InitializeInit() 1 0.07086 0.1333 0.1738 4.92% Amr::defBaseLevel() 1 0.07085 0.1333 0.1738 4.92% FillPatchIterator::FillFromLevel0() 41 0.123 0.1404 0.1524 4.31% FillPatchSingleLevel 41 0.1229 0.1403 0.1522 4.31% check_for_negative_density() 10 0.07394 0.1092 0.1457 4.12% Castro::expand_state() 10 0.1073 0.1249 0.1372 3.88% Castro::clean_state() 62 0.1133 0.1174 0.1262 3.57% Castro::initData() 1 0.05127 0.08882 0.1255 3.55% FabArray::ParallelCopy() 41 0.09056 0.1066 0.1195 3.38% Castro::estTimeStep() 21 0.02603 0.06727 0.1087 3.07% Amr::FinalizeInit() 1 0.02717 0.06388 0.1019 2.88% Castro::do_old_sources() 10 0.09378 0.09689 0.09953 2.82% Castro::initialize_advance() 10 0.06582 0.07464 0.08982 2.54% amrex::Copy() 193 0.07668 0.08051 0.08616 2.44% FabArray::setVal() 143 0.06411 0.07265 0.0818 2.31% Castro::computeTemp() 63 0.0653 0.06948 0.07828 2.21% FabArray::ParallelCopy_finish() 41 0.05191 0.06544 0.0773 2.19% Castro::computeInitialDt() 2 0.002252 0.03888 0.07682 2.17% Castro::do_new_sources() 10 0.06161 0.06639 0.07272 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04551 0.0486 0.05713 1.62% Castro::reset_internal_energy(Fab) 1008 0.04521 0.04828 0.05668 1.60% Castro::normalize_species() 62 0.04164 0.04244 0.04336 1.23% FabArray::ParallelCopy_nowait() 41 0.03855 0.04105 0.04235 1.20% StateDataPhysBCFunct::() 41 0.03186 0.03363 0.03576 1.01% StateData::FillBoundary(geom) 41 0.03174 0.03352 0.03565 1.01% Castro::construct_new_source() 50 0.02967 0.03164 0.03424 0.97% Amr::InitAmr() 1 0.0002183 0.00412 0.03137 0.89% DistributionMapping::SFCProcessorMapDoIt() 1 4.582e-05 0.02733 0.03124 0.88% DistributionMapping::LeastUsedCPUs() 1 4.1e-05 0.02732 0.03124 0.88% Gravity::interpolate_monopole_grav() 21 0.02741 0.02903 0.02986 0.84% Castro::construct_new_gravity_source() 10 0.02366 0.02558 0.02832 0.80% Castro::finalize_do_advance() 10 0.01333 0.0205 0.02502 0.71% Castro::post_init() 1 0.02439 0.02452 0.02466 0.70% Amr::writePlotFile() 2 0.02321 0.02327 0.0234 0.66% Castro::post_timestep() 10 0.01514 0.01586 0.01626 0.46% Castro::apply_source_to_state() 20 0.0117 0.01242 0.01308 0.37% FabArray::Saxpy() 20 0.01165 0.01238 0.01303 0.37% VisMF::Write(FabArray) 2 0.009556 0.01014 0.01267 0.36% FabArray::setDomainBndry() 41 0.008367 0.01048 0.01243 0.35% Castro::check_for_nan() 20 0.01039 0.01109 0.01198 0.34% MultiFab::contains_nan() 20 0.01036 0.01106 0.01196 0.34% Castro::Castro() 1 0.01001 0.01126 0.01188 0.34% Castro::construct_old_source() 50 0.008824 0.009645 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.008758 0.009573 0.01019 0.29% Castro::computeNewDt() 9 0.009054 0.009072 0.009084 0.26% Castro::initMFs() 1 0.006604 0.00694 0.007614 0.22% Other 258 0.02615 0.02925 0.03197 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 38 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8583 KiB 8596 KiB 8600 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6689 KiB 6698 KiB 6700 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7068 KiB 7079 KiB 7081 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4500 KiB 4521 KiB 4530 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 203 KiB 234 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2776 KiB 2780 KiB 2782 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 221 KiB 228 KiB 232 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 47 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2009 KiB 2012 KiB 2013 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 67 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-7-gad5071134335) finalized